Rmu_co8114210.1_g000001

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8114210.1
OG0000455
Physical Location & Seq
Forward (+)
1 .. 613
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8114210.1_g000001.1.cds

Sequence Viewer

Length: 284 bp
gtagaccttcagtgtgaaaaatgctacaggaaggtcaaaaaagttctctgtaaattccctcaaatacgagaccaggcgtacgacgagaagaacaaccaggtgatcatcaaagtggtctgctgcagtcctgaaaagatcagggaccagctatgctgcaaaggaggtggatgcattaagagcatcgagatcaaagagcccgagaagcccaagcctcctcctcctcctccggcgccgaaacccgctccggctccacctccggcgccgaaacctgctccggctccacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

95

Amino Acids

10.42

Weight (kDa)

9.18

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccB1I GGYRCC 2 cut(s) 229, 259
AccBSI CCGCTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 3
AciI CCGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 53
AcyI GRCGYC 2 cut(s) 230, 260
AfaI GTAC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 72, 96
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 120, 153
ApoI RAATTY 1 cut(s) 53
AspLEI GCGC 2 cut(s) 232, 262
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 142
BanI GGYRCC 2 cut(s) 229, 259
BanII GRGCYC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 107, 140
BciT130I CCWGG 2 cut(s) 74, 98
BclI TGATCA 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 2 cut(s) 25, 121
BfoI RGCGCY 2 cut(s) 233, 263
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 2 cut(s) 121, 154
BlsI GCNGC 2 cut(s) 122, 155
Bme1390I CCNGG 2 cut(s) 74, 98
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 5 cut(s) 143, 231, 249, 261, 279
BmrFI CCNGG 2 cut(s) 74, 98
BmsI GCATC 2 cut(s) 158, 189
BsaHI GRCGYC 2 cut(s) 230, 260
BsaI GGTCTC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 74, 98
BseGI GGATG 1 cut(s) 173
BseRI GAGGAG 4 cut(s) 204, 207, 210, 213
BseXI GCAGC 2 cut(s) 107, 140
BshNI GGYRCC 2 cut(s) 229, 259
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 4 cut(s) 227, 245, 257, 275
BsiWI CGTACG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 102, 135, 186
BspACI CCGC 1 cut(s) 240
BspLI GGNNCC 5 cut(s) 143, 231, 249, 261, 279
BspMAI CTGCAG 1 cut(s) 125
BspMI ACCTGC 1 cut(s) 277
BspT107I GGYRCC 2 cut(s) 229, 259
BspTNI GGTCTC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 242
BssMI GATC 3 cut(s) 102, 135, 186
BssNI GRCGYC 2 cut(s) 230, 260
Bst2UI CCWGG 2 cut(s) 74, 98
BstACI GRCGYC 2 cut(s) 230, 260
BstF5I GGATG 1 cut(s) 173
BstH2I RGCGCY 2 cut(s) 233, 263
BstHHI GCGC 2 cut(s) 232, 262
BstKTI GATC 3 cut(s) 105, 138, 189
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 102, 135, 186
BstMWI GCNNNNNNNGC 2 cut(s) 177, 202
BstNI CCWGG 2 cut(s) 74, 98
BstSCI CCNGG 2 cut(s) 72, 96
BstSFI CTRYAG 2 cut(s) 25, 121
BstV1I GCAGC 2 cut(s) 107, 140
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 17
BveI ACCTGC 1 cut(s) 277
CfoI GCGC 2 cut(s) 232, 262
Cfr13I GGNCC 1 cut(s) 142
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 79
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviJI RGCY 6 cut(s) 148, 196, 205, 211, 248, 278
CviKI_1 RGCY 6 cut(s) 148, 196, 205, 211, 248, 278
CviQI GTAC 1 cut(s) 79
DinI GGCGCC 2 cut(s) 231, 261
DpnI GATC 3 cut(s) 104, 137, 188
DpnII GATC 3 cut(s) 102, 135, 186
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 72, 96
EcoT22I ATGCAT 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 198
EgeI GGCGCC 2 cut(s) 231, 261
EheI GGCGCC 2 cut(s) 231, 261
FaiI YATR 1 cut(s) 151
FaqI GGGAC 1 cut(s) 155
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 121, 154
FokI GGATG 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 121, 154
GlaI GCGC 2 cut(s) 231, 261
GluI GCNGC 2 cut(s) 121, 154
HaeII RGCGCY 2 cut(s) 233, 263
HapII CCGG 4 cut(s) 227, 245, 257, 275
HhaI GCGC 2 cut(s) 232, 262
Hin1I GRCGYC 2 cut(s) 230, 260
Hin6I GCGC 2 cut(s) 230, 260
HinP1I GCGC 2 cut(s) 230, 260
HpaII CCGG 4 cut(s) 227, 245, 257, 275
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 4
Hpy188III TCNNGA 2 cut(s) 128, 184
Hpy8I GTNNAC 1 cut(s) 4
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 17, 25
HpyCH4V TGCA 3 cut(s) 123, 156, 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 202
Hsp92I GRCGYC 2 cut(s) 230, 260
HspAI GCGC 2 cut(s) 230, 260
KasI GGCGCC 2 cut(s) 229, 259
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 3 cut(s) 102, 135, 186
LmnI GCTCC 4 cut(s) 247, 253, 277, 283
Lsp1109I GCAGC 2 cut(s) 107, 140
LweI GCATC 2 cut(s) 158, 189
MabI ACCWGGT 1 cut(s) 96
MalI GATC 3 cut(s) 104, 137, 188
MbiI CCGCTC 1 cut(s) 242
MboI GATC 3 cut(s) 102, 135, 186
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 53
Mly113I GGCGCC 2 cut(s) 230, 260
MnlI CCTC 8 cut(s) 69, 155, 222, 225, 228, 231, 234, 264
Mph1103I ATGCAT 1 cut(s) 173
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 4 cut(s) 227, 245, 257, 275
MspR9I CCNGG 2 cut(s) 74, 98
MvaI CCWGG 2 cut(s) 74, 98
MwoI GCNNNNNNNGC 2 cut(s) 177, 202
NarI GGCGCC 2 cut(s) 230, 260
NdeII GATC 3 cut(s) 102, 135, 186
NlaIV GGNNCC 5 cut(s) 143, 231, 249, 261, 279
NsiI ATGCAT 1 cut(s) 173
Pfl23II CGTACG 1 cut(s) 78
PkrI GCNGC 2 cut(s) 122, 155
PluTI GGCGCC 2 cut(s) 233, 263
Psp6I CCWGG 2 cut(s) 72, 96
PspGI CCWGG 2 cut(s) 72, 96
PspLI CGTACG 1 cut(s) 78
PspN4I GGNNCC 5 cut(s) 143, 231, 249, 261, 279
PspPI GGNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 125
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 121, 154
Sau3AI GATC 3 cut(s) 102, 135, 186
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 74, 98
SduI GDGCHC 1 cut(s) 198
SetI ASST 7 cut(s) 9, 36, 102, 150, 166, 256, 271
SexAI ACCWGGT 1 cut(s) 96
SfaNI GCATC 2 cut(s) 158, 189
SfcI CTRYAG 2 cut(s) 25, 121
SfoI GGCGCC 2 cut(s) 231, 261
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 53
SsiI CCGC 1 cut(s) 240
SspDI GGCGCC 2 cut(s) 229, 259
StyD4I CCNGG 2 cut(s) 72, 96
TaqI TCGA 1 cut(s) 183
TasI AATT 1 cut(s) 53
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 17
TseI GCWGC 2 cut(s) 120, 153
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 3
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.