AT4G16380

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000455
Physical Location & Seq
Forward (+)
9254203 .. 9256234
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16380.1

Sequence Viewer

Length: 765 bp
ATGGCCGAGAAGGGCAAAGAAAAGGTAACTATGATGAAGTTGAAGGTGGATCTTGATTGTGCCAAATGTTACAAGAAAGTGAAGAAGGTTCTTTGCAAGTTCCCTCAAATAAGAGACCAATTGTTCGATGAAAAGTCCAACATTGTTATCATCAAGGTGGTTTGCTGTAGTCCTGAGAGGATCATGGACAAACTCTGTTCCAAAGGCGGCGGCTCGATAAAGACCATTGAGATCGTCGAGCCACCCAAGCCTCCTCAGCCACAACCCCAACAACCACCTCAGAAACCTAAAGATGCTCAGCCTAAAGCTCCTGAGAAGCCTAAGGAACCTGAAAAGCCAAAACAGCCTGAAAAGCTTAAAGAGCCAGAGAAGCCCAAACAGCCAGAAAAGCCCAAAGAACCCGAAAAGACGAAGCAACCCGCACCCGCTCCAGCTCCCGCACCAGCACCCGCAGCCAAACCCGCACCCGCTCCCGCTCCAGCTCCCGCACCTGCCCCGAAGCAGCCGGGACCGCCACCGCAAGCGATCCCGATGATGCCGCAAGGGCAGCCAGCAATGTGTTGCGGGCCCTACTACGATGGATACGGAGGGCCAGCATTCAATGGATATGGAATGCCGCCGCAGCCTTACGAGTGCTATGGACGACCAGTCTACGAGAGCTGGGGTGGGGGCTGCCCACCACCACCACCTGCTTATAGACAATGCCACGTCACTAGATGTGATTACTTCAGCGAAGAGAATCCACAGAGCTGTTCCATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

254

Amino Acids

27.8

Weight (kDa)

9.03

Isoelectric Point (pI)

77.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 499, 697
Acc36I ACCTGC 2 cut(s) 499, 697
AccBSI CCGCTC 3 cut(s) 428, 470, 476
AccI GTMKAC 1 cut(s) 651
AclWI GGATC 3 cut(s) 57, 188, 520
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 712
AgsI TTSAA 2 cut(s) 43, 601
AhdI GACNNNNNGTC 1 cut(s) 647
AjiI CACGTC 1 cut(s) 709
AluBI AGCT 6 cut(s) 308, 355, 434, 482, 660, 750
AluI AGCT 6 cut(s) 308, 355, 434, 482, 660, 750
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 57, 188, 520
AoxI GGCC 3 cut(s) 3, 566, 590
ApaI GGGCCC 1 cut(s) 570
ApeKI GCWGC 5 cut(s) 452, 502, 547, 622, 672
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 4 cut(s) 509, 566, 567, 590
AsuC2I CCSGG 1 cut(s) 507
AvaII GGWCC 1 cut(s) 509
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 5 cut(s) 464, 514, 559, 634, 659
BccI CCATC 2 cut(s) 572, 764
BciVI GTATCC 1 cut(s) 575
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 1 cut(s) 166
BfuAI ACCTGC 2 cut(s) 499, 697
BfuI GTATCC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 544
BlpI GCTNAGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 507
Bme18I GGWCC 1 cut(s) 509
BmeRI GACNNNNNGTC 1 cut(s) 647
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 4 cut(s) 509, 566, 567, 590
BmiI GGNNCC 3 cut(s) 327, 510, 568
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 2 cut(s) 283, 525
BpmI CTGGAG 2 cut(s) 414, 462
Bpu10I CCTNAGC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 647
Bse21I CCTNAGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 561
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 5 cut(s) 165, 269, 293, 303, 311
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 5 cut(s) 464, 514, 559, 634, 659
BseYI CCCAGC 1 cut(s) 660
BshFI GGCC 3 cut(s) 5, 568, 592
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 522
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 522
BsmI GAATGC 2 cut(s) 596, 618
BsnI GGCC 3 cut(s) 5, 568, 592
Bso31I GGTCTC 1 cut(s) 108
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 49, 180, 231, 525
Bsp1720I GCTNAGC 1 cut(s) 297
BspANI GGCC 3 cut(s) 5, 568, 592
BspCNI CTCAG 5 cut(s) 166, 268, 292, 304, 310
BspLI GGNNCC 3 cut(s) 327, 510, 568
BspMI ACCTGC 2 cut(s) 499, 697
BspPI GGATC 3 cut(s) 57, 188, 520
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 3 cut(s) 428, 470, 476
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 1 cut(s) 647
BssMI GATC 4 cut(s) 49, 180, 231, 525
Bst6I CTCTTC 1 cut(s) 729
BstC8I GCNNGC 4 cut(s) 522, 552, 566, 594
BstDEI CTNAG 6 cut(s) 174, 255, 279, 297, 312, 321
BstKTI GATC 4 cut(s) 52, 183, 234, 528
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 4 cut(s) 49, 180, 231, 525
BstSCI CCNGG 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 570
BstV1I GCAGC 5 cut(s) 464, 514, 559, 634, 659
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 321
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 3 cut(s) 5, 568, 592
BtrI CACGTC 1 cut(s) 709
BveI ACCTGC 2 cut(s) 499, 697
Cac8I GCNNGC 4 cut(s) 522, 552, 566, 594
Cfr13I GGNCC 4 cut(s) 509, 566, 567, 590
CviAII CATG 2 cut(s) 184, 760
DdeI CTNAG 6 cut(s) 174, 255, 279, 297, 312, 321
DpnI GATC 4 cut(s) 51, 182, 233, 527
DpnII GATC 4 cut(s) 49, 180, 231, 525
DriI GACNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 729
Eam1105I GACNNNNNGTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 570
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 712
Eco81I CCTNAGG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 570
FaeI CATG 2 cut(s) 187, 763
FaiI YATR 6 cut(s) 32, 185, 609, 639, 696, 761
FaqI GGGAC 1 cut(s) 522
FatI CATG 2 cut(s) 183, 759
FauI CCCGC 9 cut(s) 427, 433, 445, 457, 469, 475, 481, 493, 557
FblI GTMKAC 1 cut(s) 651
FriOI GRGCYC 1 cut(s) 570
FspBI CTAG 1 cut(s) 714
GsaI CCCAGC 1 cut(s) 664
GsuI CTGGAG 2 cut(s) 414, 462
HaeIII GGCC 3 cut(s) 5, 568, 592
HapII CCGG 1 cut(s) 506
Hin1II CATG 2 cut(s) 187, 763
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 1 cut(s) 739
HpaII CCGG 1 cut(s) 506
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 4 cut(s) 53, 173, 311, 529
Hpy8I GTNNAC 1 cut(s) 652
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 4, 37, 79
HpyCH4IV ACGT 1 cut(s) 708
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 6 cut(s) 174, 255, 279, 297, 312, 321
HpySE526I ACGT 1 cut(s) 708
Hsp92II CATG 2 cut(s) 187, 763
Kzo9I GATC 4 cut(s) 49, 180, 231, 525
LmnI GCTCC 6 cut(s) 313, 433, 439, 475, 481, 487
Lsp1109I GCAGC 5 cut(s) 464, 514, 559, 634, 659
LweI GCATC 2 cut(s) 283, 525
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 708
MaeIII GTNAC 3 cut(s) 25, 68, 709
MalI GATC 4 cut(s) 51, 182, 233, 527
MbiI CCGCTC 3 cut(s) 428, 470, 476
MboI GATC 4 cut(s) 49, 180, 231, 525
MboII GAAGA 2 cut(s) 94, 746
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 114, 171, 261, 264, 288, 581
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 507
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 2 cut(s) 596, 618
NciI CCSGG 1 cut(s) 507
NdeII GATC 4 cut(s) 49, 180, 231, 525
NlaIII CATG 2 cut(s) 187, 763
NlaIV GGNNCC 3 cut(s) 327, 510, 568
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 709
PaqCI CACCTGC 2 cut(s) 499, 697
PctI GAATGC 2 cut(s) 596, 618
PfeI GAWTC 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 660
PspN4I GGNNCC 3 cut(s) 327, 510, 568
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 4 cut(s) 509, 566, 567, 590
PsuI RGATCY 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 357
Sau3AI GATC 4 cut(s) 49, 180, 231, 525
Sau96I GGNCC 4 cut(s) 509, 566, 567, 590
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 2 cut(s) 283, 525
SfcI CTRYAG 1 cut(s) 166
SinI GGWCC 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 119
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 1 cut(s) 505
TaiI ACGT 1 cut(s) 711
TaqI TCGA 3 cut(s) 126, 215, 237
TasI AATT 1 cut(s) 119
TauI GCSGC 5 cut(s) 210, 213, 541, 619, 622
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 5 cut(s) 452, 502, 547, 622, 672
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 2 cut(s) 50, 144
TspGWI ACGGA 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.