AT1G51090

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000455
Physical Location & Seq
Forward (+)
18932766 .. 18934049
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51090.1

Sequence Viewer

Length: 516 bp
ATGGCGGAGAAGGTAGTGATGATGAAATTGAAAGTGGATCTAAACTGTTCCAAATGCTACAAAAAGGTCAAGAAAGCTATCCGCAAATTCCCTCAAATAACAGACGAATTGTTTGATGAGAAGTCCAACACGATCATCATCAAAGTAGTTTGTTACGATCCTGAGAGGCTAATGAACAAACTTTGCTACAAAGGAGACGGTTCTATCAAGTCCATCGTGATCCTTGAGCCACCCAAACCGCCTCAACCCCAGCCTCAACCACCTCAGAAGCCTACTGCCCCAGCCCCAGCCCCAGCCCAAGCCCAAGCCCCAGCTCTTGTTCGGCCGGCTCCGGTTCCTGTTCTTGTTTCGTCTTCCGCTCCTCAACCGATGCCGATGTGGCAGCCGTATCATTGTGGGCCGTATTACGAGGCCCAACAGTACCAATGTTATGGAAGGCCCGTTTACGAGAGCTGGGGAGGTGGACGACAATGTTGCCACGAAGATATGAACTCTCAAGGATGCTCCATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

8.92

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 359
AciI CCGC 4 cut(s) 5, 82, 239, 357
AclWI GGATC 3 cut(s) 45, 152, 214
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 422
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 3 cut(s) 77, 314, 453
AluI AGCT 3 cut(s) 77, 314, 453
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 3 cut(s) 45, 152, 214
AoxI GGCC 4 cut(s) 323, 398, 411, 437
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 3 cut(s) 398, 412, 438
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 221, 515
BceAI ACGGC 2 cut(s) 370, 385
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BcoDI GTCTC 1 cut(s) 189
BglI GCCNNNNNGGC 1 cut(s) 379
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
BmgT120I GGNCC 3 cut(s) 398, 412, 438
BmiI GGNNCC 2 cut(s) 330, 336
BmsI GCATC 2 cut(s) 360, 491
BpiI GAAGAC 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 245, 480
BsaBI GATNNNNATC 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 331
Bse118I RCCGGY 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 137
BseGI GGATG 1 cut(s) 506
BseJI GATNNNNATC 1 cut(s) 137
BseMII CTCAG 2 cut(s) 153, 278
BseRI GAGGAG 1 cut(s) 351
BseX3I CGGCCG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 394
BseYI CCCAGC 6 cut(s) 249, 280, 286, 292, 310, 453
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 4 cut(s) 325, 400, 413, 439
BsiEI CGRYCG 1 cut(s) 326
BsiSI CCGG 2 cut(s) 326, 332
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsnI GGCC 4 cut(s) 325, 400, 413, 439
Bsp143I GATC 4 cut(s) 37, 132, 157, 219
BspACI CCGC 4 cut(s) 5, 82, 239, 357
BspANI GGCC 4 cut(s) 325, 400, 413, 439
BspCNI CTCAG 2 cut(s) 154, 277
BspLI GGNNCC 2 cut(s) 330, 336
BspPI GGATC 3 cut(s) 45, 152, 214
BsrBI CCGCTC 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 325
BssMI GATC 4 cut(s) 37, 132, 157, 219
Bst4CI ACNGT 3 cut(s) 47, 200, 420
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 162, 264
BstF5I GGATG 1 cut(s) 506
BstKTI GATC 4 cut(s) 40, 135, 160, 222
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 37, 132, 157, 219
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 431
BstYI RGATCY 1 cut(s) 37
BstZI CGGCCG 1 cut(s) 323
BsuRI GGCC 4 cut(s) 325, 400, 413, 439
BtsCI GGATG 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 398, 412, 438
Csp6I GTAC 1 cut(s) 421
CviAII CATG 1 cut(s) 511
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 162, 264
DpnI GATC 4 cut(s) 39, 134, 159, 221
DpnII GATC 4 cut(s) 37, 132, 157, 219
EaeI YGGCCR 1 cut(s) 323
EagI CGGCCG 1 cut(s) 323
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 323
Eco52I CGGCCG 1 cut(s) 323
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 1 cut(s) 514
FaiI YATR 3 cut(s) 432, 488, 512
FatI CATG 1 cut(s) 510
Fnu4HI GCNGC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 383
GluI GCNGC 1 cut(s) 383
GsaI CCCAGC 6 cut(s) 253, 284, 290, 296, 314, 457
HaeIII GGCC 4 cut(s) 325, 400, 413, 439
HapII CCGG 2 cut(s) 326, 332
Hin1II CATG 1 cut(s) 514
HpaII CCGG 2 cut(s) 326, 332
Hpy166II GTNNAC 2 cut(s) 445, 464
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 70, 161, 217
Hpy8I GTNNAC 2 cut(s) 445, 464
HpyAV CCTTC 2 cut(s) 4, 429
HpyCH4III ACNGT 3 cut(s) 47, 200, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 2 cut(s) 162, 264
Hsp92II CATG 1 cut(s) 514
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Kzo9I GATC 4 cut(s) 37, 132, 157, 219
LmnI GCTCC 3 cut(s) 334, 364, 509
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 360, 491
MaeIII GTNAC 1 cut(s) 152
MalI GATC 4 cut(s) 39, 134, 159, 221
MbiI CCGCTC 1 cut(s) 359
MboI GATC 4 cut(s) 37, 132, 157, 219
MboII GAAGA 2 cut(s) 345, 494
MflI RGATCY 1 cut(s) 37
MluCI AATT 3 cut(s) 26, 86, 107
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 102, 159, 252, 264, 273, 372, 403, 452
MroNI GCCGGC 1 cut(s) 325
MspI CCGG 2 cut(s) 326, 332
MwoI GCNNNNNNNGC 1 cut(s) 379
NaeI GCCGGC 1 cut(s) 327
NdeII GATC 4 cut(s) 37, 132, 157, 219
NgoMIV GCCGGC 1 cut(s) 325
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 2 cut(s) 330, 336
PdiI GCCGGC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 384
PspFI CCCAGC 6 cut(s) 249, 280, 286, 292, 310, 453
PspN4I GGNNCC 2 cut(s) 330, 336
PspPI GGNCC 3 cut(s) 398, 412, 438
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 4 cut(s) 37, 132, 157, 219
Sau96I GGNCC 3 cut(s) 398, 412, 438
SetI ASST 7 cut(s) 15, 69, 79, 265, 316, 455, 463
SfaNI GCATC 2 cut(s) 360, 491
SmlI CTYRAG 2 cut(s) 224, 495
SmoI CTYRAG 2 cut(s) 224, 495
Sse9I AATT 3 cut(s) 26, 86, 107
SsiI CCGC 4 cut(s) 5, 82, 239, 357
TaaI ACNGT 3 cut(s) 47, 200, 420
TasI AATT 3 cut(s) 26, 86, 107
TseI GCWGC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 38, 188, 503
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.