pycom10g28710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
29218072 .. 29218567
496 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28710.2

Sequence Viewer

Length: 408 bp
ATGTGCCATAAAAAGCATCGATCGATCAAAGAGCCAGAGAAGCCCAAGCCACCACCGAGCCTGAAAAACCTAAACCGGCTGAGAAACCCAAAGAGCCTGAAAAACCTAAGCCTTGTCCTCCTCCTATGCATCCGGTTCCTTGTGTGCCAGGGTACCCACCGCCTGTCCGAACGTGTTGTACGGATTGTTACCATGGGCATGCAGGTGGGCCGTGTTACAGTGGTTATGGCCGGGGGCCACCCCCGTGCATCCAGTATGATGGTTACTATGGGAGGCCTGTGTATGACAGTTACAGCGGTTGCAGCAGGGGGTATTGTGAAGAAAATCCCTCAGTTTGCACAGTCATGTAAATCATCGATCATCTTATTGGATCGTGAAACCTTCTTCAATCTCGGGATAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.91

Weight (kDa)

10.8

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 2 cut(s) 160, 296
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 228
AfaI GTAC 2 cut(s) 154, 180
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 243
AlwI GGATC 1 cut(s) 378
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 4 cut(s) 208, 228, 235, 274
ApeKI GCWGC 1 cut(s) 302
Asp718I GGTACC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 208, 235
AsuC2I CCSGG 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 392
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 314
BccI CCATC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 149
BcnI CCSGG 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 149, 232
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 208, 235
BmiI GGNNCC 3 cut(s) 137, 154, 236
BmrFI CCNGG 2 cut(s) 149, 232
BmsI GCATC 3 cut(s) 25, 138, 257
Bpu10I CCTNAGC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 232
Bsa29I ATCGAT 3 cut(s) 19, 23, 356
BsaJI CCNNGG 3 cut(s) 148, 192, 231
BsaWI WCCGGW 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 149
BseCI ATCGAT 3 cut(s) 19, 23, 356
BseDI CCNNGG 3 cut(s) 148, 192, 231
BseGI GGATG 2 cut(s) 129, 248
BseMII CTCAG 2 cut(s) 71, 344
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 4 cut(s) 210, 230, 237, 276
BshNI GGYRCC 1 cut(s) 152
BshVI ATCGAT 3 cut(s) 19, 23, 356
BsiEI CGRYCG 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 3 cut(s) 76, 133, 231
BsnI GGCC 4 cut(s) 210, 230, 237, 276
BsoBI CYCGRG 1 cut(s) 392
Bsp143I GATC 4 cut(s) 20, 24, 357, 370
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 2 cut(s) 160, 296
BspANI GGCC 4 cut(s) 210, 230, 237, 276
BspCNI CTCAG 2 cut(s) 72, 343
BspDI ATCGAT 3 cut(s) 19, 23, 356
BspLI GGNNCC 3 cut(s) 137, 154, 236
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 148, 192, 231
BssMI GATC 4 cut(s) 20, 24, 357, 370
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 3 cut(s) 220, 289, 342
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 80, 107, 330
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 129, 248
BstKTI GATC 4 cut(s) 23, 27, 360, 373
BstMBI GATC 4 cut(s) 20, 24, 357, 370
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 40, 302
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 147, 230
BstV1I GCAGC 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 259
Bsu15I ATCGAT 3 cut(s) 19, 23, 356
BsuRI GGCC 4 cut(s) 210, 230, 237, 276
BsuTUI ATCGAT 3 cut(s) 19, 23, 356
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 129, 248
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 208, 235
ClaI ATCGAT 3 cut(s) 19, 23, 356
Csp6I GTAC 2 cut(s) 153, 179
CviAII CATG 3 cut(s) 193, 199, 345
CviQI GTAC 2 cut(s) 153, 179
DdeI CTNAG 3 cut(s) 80, 107, 330
DpnI GATC 4 cut(s) 22, 26, 359, 372
DpnII GATC 4 cut(s) 20, 24, 357, 370
EaeI YGGCCR 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 3 cut(s) 196, 202, 348
FaiI YATR 9 cut(s) 9, 127, 194, 200, 227, 257, 269, 284, 346
FatI CATG 3 cut(s) 192, 198, 344
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 2 cut(s) 116, 235
Fsp4HI GCNGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 4 cut(s) 210, 230, 237, 276
HapII CCGG 3 cut(s) 76, 133, 231
Hin1II CATG 3 cut(s) 196, 202, 348
HpaII CCGG 3 cut(s) 76, 133, 231
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 374, 394
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 3 cut(s) 220, 289, 342
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 5 cut(s) 129, 202, 248, 302, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 302
HpyF3I CTNAG 3 cut(s) 80, 107, 330
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 3 cut(s) 196, 202, 348
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 4 cut(s) 20, 24, 357, 370
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 3 cut(s) 25, 138, 257
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 4 cut(s) 187, 214, 262, 289
MalI GATC 4 cut(s) 22, 26, 359, 372
MboI GATC 4 cut(s) 20, 24, 357, 370
MboII GAAGA 2 cut(s) 331, 376
MnlI CCTC 4 cut(s) 128, 131, 266, 339
Mph1103I ATGCAT 1 cut(s) 131
MslI CAYNNNNRTG 4 cut(s) 197, 203, 243, 343
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 76, 133, 231
MspR9I CCNGG 2 cut(s) 149, 232
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 40, 302
NciI CCSGG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 192
NdeII GATC 4 cut(s) 20, 24, 357, 370
NlaIII CATG 3 cut(s) 196, 202, 348
NlaIV GGNNCC 3 cut(s) 137, 154, 236
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 243
PaeI GCATGC 1 cut(s) 202
PaqCI CACCTGC 1 cut(s) 193
PceI AGGCCT 1 cut(s) 276
PkrI GCNGC 1 cut(s) 304
Ple19I CGATCG 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 137, 154, 236
PspPI GGNCC 2 cut(s) 208, 235
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PvuI CGATCG 1 cut(s) 23
RsaI GTAC 2 cut(s) 154, 180
RsaNI GTAC 2 cut(s) 153, 179
RseI CAYNNNNRTG 4 cut(s) 197, 203, 243, 343
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 4 cut(s) 20, 24, 357, 370
Sau96I GGNCC 2 cut(s) 208, 235
ScrFI CCNGG 2 cut(s) 149, 232
SetI ASST 5 cut(s) 72, 108, 175, 207, 383
SfaNI GCATC 3 cut(s) 25, 138, 257
SmiMI CAYNNNNRTG 4 cut(s) 197, 203, 243, 343
SphI GCATGC 1 cut(s) 202
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 2 cut(s) 160, 296
SspI AATATT 1 cut(s) 402
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 147, 230
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 3 cut(s) 220, 289, 342
TaiI ACGT 1 cut(s) 175
TaqI TCGA 3 cut(s) 19, 23, 356
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 225
XceI RCATGY 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.