Rh1AG203900

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000455
Physical Location & Seq
Reverse (-)
38676253 .. 38711835
35583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG203900.1

Sequence Viewer

Length: 885 bp
ATGGTCGTTCCGCCCCCGTATTCAATCATTTCGCCCAGACTCTGTCCAAAACATCAGATCTCATCTGATCGAGCTCTCACTGCAACAACAATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAAAAAGTTCTCTGTAAATTCCCTGAAATACGAGACCAGGCGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGATGCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAGGCCTCCTCCTCCGGCGCCGAAACCCGCTCCGGCTCCACCTCCGGAGCCGAAACCTGCTCCGGCTCCACCTCCGGCTCCGAAACCTGCTCCGGCTCCACCTCCGGCGCCTAAACCAGCTCCAGCTCCGGAGCCAAAACCTGCTCCGGTTCCTCCTTGCTGTCCGCGGCCTGTGAAGCCGTGTTGTATGGATTGTTACGAAGGGCGTCGTGGTGGACCTTGTGAGACTGGGTATGGTTGCGGTGGGCGTGCCCCGGCTCCGGTTCCTGCTTGCCCTCCGTGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGAGAAGAAAATCCCCAAGCGTGCGCCATCATAGCTGTGACAAGAGAGGAAGAGGAGAGAGATGGCGGACGAGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

294

Amino Acids

31.89

Weight (kDa)

8.65

Isoelectric Point (pI)

67.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 397, 427, 481
AccB1I GGYRCC 2 cut(s) 349, 439
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 499
AccIII TCCGGA 2 cut(s) 376, 460
AciI CCGC 8 cut(s) 11, 360, 497, 499, 573, 753, 790, 870
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 2 cut(s) 119, 143
AcyI GRCGYC 4 cut(s) 350, 440, 538, 652
AfaI GTAC 2 cut(s) 206, 713
AfiI CCNNNNNNNGG 1 cut(s) 592
AgsI TTSAA 1 cut(s) 24
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 4 cut(s) 198, 222, 332, 655
AluBI AGCT 6 cut(s) 74, 274, 452, 458, 765, 839
AluI AGCT 6 cut(s) 74, 274, 452, 458, 765, 839
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 189, 551
AlwNI CAGNNNCTG 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 323
Aor13HI TCCGGA 2 cut(s) 376, 460
AoxI GGCC 5 cut(s) 335, 500, 614, 692, 731
ApeKI GCWGC 2 cut(s) 246, 279
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 3 cut(s) 352, 442, 830
AspS9I GGNCC 2 cut(s) 548, 662
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 3 cut(s) 118, 238, 631
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 2 cut(s) 548, 662
BaeGI GKGCMC 1 cut(s) 586
BanI GGYRCC 2 cut(s) 349, 439
BanII GRGCYC 2 cut(s) 76, 324
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 233, 266
BccI CCATC 3 cut(s) 710, 839, 860
BceAI ACGGC 2 cut(s) 496, 766
BciT130I CCWGG 4 cut(s) 200, 224, 334, 657
BclI TGATCA 1 cut(s) 228
BcnI CCSGG 1 cut(s) 587
BcoDI GTCTC 2 cut(s) 189, 551
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 2 cut(s) 151, 247
BfoI RGCGCY 2 cut(s) 353, 443
BfuAI ACCTGC 3 cut(s) 397, 427, 481
BglII AGATCT 1 cut(s) 57
BisI GCNGC 3 cut(s) 247, 280, 500
BlsI GCNGC 3 cut(s) 248, 281, 501
Bme1390I CCNGG 5 cut(s) 200, 224, 334, 587, 657
Bme18I GGWCC 2 cut(s) 548, 662
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 548, 662
BmrFI CCNGG 5 cut(s) 200, 224, 334, 587, 657
BmrI ACTGGG 2 cut(s) 570, 684
BmsI GCATC 2 cut(s) 284, 315
BmuI ACTGGG 2 cut(s) 570, 684
BpmI CTGGAG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 587
BsaHI GRCGYC 4 cut(s) 350, 440, 538, 652
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 332, 497, 585, 611
BsaWI WCCGGW 4 cut(s) 376, 460, 478, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse118I RCCGGY 2 cut(s) 616, 733
Bse1I ACTGG 2 cut(s) 565, 679
BseAI TCCGGA 2 cut(s) 376, 460
BseBI CCWGG 4 cut(s) 200, 224, 334, 657
BseDI CCNNGG 4 cut(s) 332, 497, 585, 611
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 592
BseNI ACTGG 2 cut(s) 565, 679
BseRI GAGGAG 4 cut(s) 330, 333, 775, 872
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 2 cut(s) 233, 266
Bsh1236I CGCG 1 cut(s) 499
BshFI GGCC 5 cut(s) 337, 502, 616, 694, 733
BshNI GGYRCC 2 cut(s) 349, 439
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 323
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 281, 648
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 2 cut(s) 189, 551
BsmFI GGGAC 2 cut(s) 281, 648
BsnI GGCC 5 cut(s) 337, 502, 616, 694, 733
Bso31I GGTCTC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 76, 324, 586
Bsp13I TCCGGA 2 cut(s) 376, 460
Bsp143I GATC 5 cut(s) 57, 67, 228, 261, 312
BspACI CCGC 8 cut(s) 11, 360, 497, 499, 573, 753, 790, 870
BspANI GGCC 5 cut(s) 337, 502, 616, 694, 733
BspEI TCCGGA 2 cut(s) 376, 460
BspFNI CGCG 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 251
BspMI ACCTGC 3 cut(s) 397, 427, 481
BspT107I GGYRCC 2 cut(s) 349, 439
BspTNI GGTCTC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 616, 733
BsrI ACTGG 2 cut(s) 565, 679
BssAI RCCGGY 2 cut(s) 616, 733
BssECI CCNNGG 4 cut(s) 332, 497, 585, 611
BssMI GATC 5 cut(s) 57, 67, 228, 261, 312
BssNI GRCGYC 4 cut(s) 350, 440, 538, 652
Bst2UI CCWGG 4 cut(s) 200, 224, 334, 657
Bst4CI ACNGT 2 cut(s) 689, 711
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 4 cut(s) 350, 440, 538, 652
BstC8I GCNNGC 4 cut(s) 582, 604, 696, 826
BstDSI CCRYGG 2 cut(s) 497, 611
BstF5I GGATG 1 cut(s) 299
BstFNI CGCG 1 cut(s) 499
BstH2I RGCGCY 2 cut(s) 353, 443
BstHHI GCGC 3 cut(s) 352, 442, 830
BstKTI GATC 5 cut(s) 60, 70, 231, 264, 315
BstMAI GTCTC 2 cut(s) 189, 551
BstMBI GATC 5 cut(s) 57, 67, 228, 261, 312
BstMWI GCNNNNNNNGC 6 cut(s) 80, 303, 328, 508, 789, 836
BstNI CCWGG 4 cut(s) 200, 224, 334, 657
BstSCI CCNGG 5 cut(s) 198, 222, 332, 585, 655
BstSFI CTRYAG 2 cut(s) 151, 247
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 233, 266
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 5 cut(s) 337, 502, 616, 694, 733
BtgI CCRYGG 2 cut(s) 497, 611
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 143
BveI ACCTGC 3 cut(s) 397, 427, 481
Cac8I GCNNGC 4 cut(s) 582, 604, 696, 826
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 3 cut(s) 352, 442, 830
Cfr10I RCCGGY 2 cut(s) 616, 733
Cfr13I GGNCC 2 cut(s) 548, 662
Cfr42I CCGCGG 1 cut(s) 500
CseI GACGC 2 cut(s) 527, 641
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 2 cut(s) 205, 712
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviQI GTAC 2 cut(s) 205, 712
DinI GGCGCC 2 cut(s) 351, 441
DpnI GATC 5 cut(s) 59, 69, 230, 263, 314
DpnII GATC 5 cut(s) 57, 67, 228, 261, 312
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 885
Ecl136II GAGCTC 1 cut(s) 74
Eco147I AGGCCT 2 cut(s) 337, 694
Eco24I GRGCYC 2 cut(s) 76, 324
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 548, 662
Eco53kI GAGCTC 1 cut(s) 74
Eco57I CTGAAG 2 cut(s) 119, 143
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 74
EcoRII CCWGG 4 cut(s) 198, 222, 332, 655
EcoT22I ATGCAT 1 cut(s) 299
EcoT38I GRGCYC 2 cut(s) 76, 324
EgeI GGCGCC 2 cut(s) 351, 441
EheI GGCGCC 2 cut(s) 351, 441
FaqI GGGAC 2 cut(s) 281, 648
FauI CCCGC 2 cut(s) 367, 797
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 247, 280, 500
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 2 cut(s) 76, 324
Fsp4HI GCNGC 3 cut(s) 247, 280, 500
FspBI CTAG 1 cut(s) 774
GlaI GCGC 3 cut(s) 351, 441, 829
GluI GCNGC 3 cut(s) 247, 280, 500
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 2 cut(s) 353, 443
HaeIII GGCC 5 cut(s) 337, 502, 616, 694, 733
HgaI GACGC 2 cut(s) 527, 641
HhaI GCGC 3 cut(s) 352, 442, 830
Hin1I GRCGYC 4 cut(s) 350, 440, 538, 652
Hin6I GCGC 3 cut(s) 350, 440, 828
HinP1I GCGC 3 cut(s) 350, 440, 828
HinfI GANTC 2 cut(s) 39, 118
HphI GGTGA 3 cut(s) 118, 238, 631
Hpy166II GTNNAC 3 cut(s) 130, 548, 622
Hpy188I TCNGA 5 cut(s) 57, 67, 123, 414, 806
Hpy188III TCNNGA 4 cut(s) 254, 310, 377, 461
Hpy8I GTNNAC 3 cut(s) 130, 548, 622
Hpy99I CGWCG 2 cut(s) 212, 543
HpyAV CCTTC 7 cut(s) 97, 118, 143, 151, 527, 641, 723
HpyCH4III ACNGT 2 cut(s) 689, 711
HpyCH4V TGCA 4 cut(s) 83, 249, 282, 297
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 303, 328, 508, 789, 836
Hsp92I GRCGYC 4 cut(s) 350, 440, 538, 652
HspAI GCGC 3 cut(s) 350, 440, 828
KasI GGCGCC 2 cut(s) 349, 439
Kpn2I TCCGGA 2 cut(s) 376, 460
Ksp22I TGATCA 1 cut(s) 228
KspI CCGCGG 1 cut(s) 500
Kzo9I GATC 5 cut(s) 57, 67, 228, 261, 312
Lsp1109I GCAGC 2 cut(s) 233, 266
LweI GCATC 2 cut(s) 284, 315
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 1 cut(s) 774
MaeIII GTNAC 8 cut(s) 106, 527, 641, 683, 746, 776, 784, 841
MalI GATC 5 cut(s) 59, 69, 230, 263, 314
MbiI CCGCTC 1 cut(s) 362
MboI GATC 5 cut(s) 57, 67, 228, 261, 312
MboII GAAGA 3 cut(s) 226, 821, 866
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 3 cut(s) 76, 324, 586
MluCI AATT 1 cut(s) 179
Mly113I GGCGCC 2 cut(s) 350, 440
MlyI GAGTC 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 299
MroI TCCGGA 2 cut(s) 376, 460
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 2 cut(s) 236, 839
MspA1I CMGCKG 1 cut(s) 499
MspR9I CCNGG 5 cut(s) 200, 224, 334, 587, 657
MvaI CCWGG 4 cut(s) 200, 224, 334, 657
MvnI CGCG 1 cut(s) 499
MwoI GCNNNNNNNGC 6 cut(s) 80, 303, 328, 508, 789, 836
NarI GGCGCC 2 cut(s) 350, 440
NciI CCSGG 1 cut(s) 587
NdeII GATC 5 cut(s) 57, 67, 228, 261, 312
NmuCI GTSAC 3 cut(s) 106, 784, 841
NsiI ATGCAT 1 cut(s) 299
PceI AGGCCT 2 cut(s) 337, 694
PfeI GAWTC 1 cut(s) 118
Pfl23II CGTACG 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 248, 281, 501
PleI GAGTC 1 cut(s) 33
PluTI GGCGCC 2 cut(s) 353, 443
PpsI GAGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 76
Psp6I CCWGG 4 cut(s) 198, 222, 332, 655
PspGI CCWGG 4 cut(s) 198, 222, 332, 655
PspLI CGTACG 1 cut(s) 204
PspPI GGNCC 2 cut(s) 548, 662
PstI CTGCAG 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 42
RsaI GTAC 2 cut(s) 206, 713
RsaNI GTAC 2 cut(s) 205, 712
RseI CAYNNNNRTG 2 cut(s) 236, 839
SacI GAGCTC 1 cut(s) 76
SacII CCGCGG 1 cut(s) 500
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 3 cut(s) 247, 280, 500
Sau3AI GATC 5 cut(s) 57, 67, 228, 261, 312
Sau96I GGNCC 2 cut(s) 548, 662
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 5 cut(s) 200, 224, 334, 587, 657
SduI GDGCHC 3 cut(s) 76, 324, 586
SexAI ACCWGGT 1 cut(s) 222
SfaNI GCATC 2 cut(s) 284, 315
SfcI CTRYAG 2 cut(s) 151, 247
SfoI GGCGCC 2 cut(s) 351, 441
Sfr303I CCGCGG 1 cut(s) 500
SgrBI CCGCGG 1 cut(s) 500
SinI GGWCC 2 cut(s) 548, 662
SmiMI CAYNNNNRTG 2 cut(s) 236, 839
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 1 cut(s) 179
SseBI AGGCCT 2 cut(s) 337, 694
SsiI CCGC 8 cut(s) 11, 360, 497, 499, 573, 753, 790, 870
SspDI GGCGCC 2 cut(s) 349, 439
SspMI CTAG 1 cut(s) 774
SstI GAGCTC 1 cut(s) 76
StuI AGGCCT 2 cut(s) 337, 694
StyD4I CCNGG 5 cut(s) 198, 222, 332, 585, 655
TaaI ACNGT 2 cut(s) 689, 711
TaqI TCGA 2 cut(s) 70, 309
TasI AATT 1 cut(s) 179
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 85, 143
TseFI GTSAC 3 cut(s) 106, 784, 841
TseI GCWGC 2 cut(s) 246, 279
Tsp45I GTSAC 3 cut(s) 106, 784, 841
TspGWI ACGGA 1 cut(s) 600
TspRI CASTG 2 cut(s) 85, 143
Tth111I GACNNNGTC 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 548, 662
XapI RAATTY 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 774
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.