Rh7AG027500

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000455
Physical Location & Seq
Reverse (-)
1814388 .. 1815980
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG027500.1

Sequence Viewer

Length: 621 bp
ATGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCTGTCCCGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCTTCTCCGGCTCCGAAACCTGCTCCCGCTCCGGCTCCGAAACCTGCACCGGCTCCGGCTTCGAAACCTGCTCCCGCTCCTGCTCCGAAACCGGCTCCGGCTCCGGCGGGGGTACCTGCTTGCCCTCGGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTACGGTGCTCCGGCTCCACCTCCTGCTCCGAAACCTTCTCCGGCTCCTGTGCCGGTTCCTCCTTGCCGTCCGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTCACAGATGGCCTGCCCCTTACACACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGTTACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGGGTGCGCAATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

206

Amino Acids

21.72

Weight (kDa)

8.76

Isoelectric Point (pI)

82.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 610
Acc36I ACCTGC 4 cut(s) 166, 190, 214, 262
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 2 cut(s) 92, 250
AccBSI CCGCTC 2 cut(s) 167, 215
AccII CGCG 1 cut(s) 406
AciI CCGC 8 cut(s) 165, 213, 245, 268, 404, 406, 546, 571
AcoI YGGCCR 2 cut(s) 269, 407
AcyI GRCGYC 3 cut(s) 93, 307, 445
AfaI GTAC 4 cut(s) 5, 252, 335, 506
AjnI CCWGG 2 cut(s) 21, 448
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 343
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 269, 407, 485, 524
ApeKI GCWGC 2 cut(s) 45, 78
Asp718I GGTACC 1 cut(s) 250
AspLEI GCGC 2 cut(s) 95, 611
AspS9I GGNCC 2 cut(s) 317, 455
AsuHPI GGTGA 3 cut(s) 37, 286, 424
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 317, 455
BanI GGYRCC 2 cut(s) 92, 250
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 32, 65
BccI CCATC 2 cut(s) 477, 503
BceAI ACGGC 2 cut(s) 384, 559
BciT130I CCWGG 2 cut(s) 23, 450
BclI TGATCA 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 4 cut(s) 166, 190, 214, 262
BisI GCNGC 4 cut(s) 46, 79, 269, 407
BlsI GCNGC 4 cut(s) 47, 80, 270, 408
Bme1390I CCNGG 2 cut(s) 23, 450
Bme18I GGWCC 2 cut(s) 317, 455
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 317, 455
BmrFI CCNGG 2 cut(s) 23, 450
BmrI ACTGGG 2 cut(s) 339, 477
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 2 cut(s) 339, 477
Bpu14I TTCGAA 1 cut(s) 200
BsaHI GRCGYC 3 cut(s) 93, 307, 445
BsaJI CCNNGG 3 cut(s) 263, 404, 601
Bse118I RCCGGY 6 cut(s) 187, 229, 271, 385, 409, 526
Bse1I ACTGG 2 cut(s) 334, 472
BseBI CCWGG 2 cut(s) 23, 450
BseDI CCNNGG 3 cut(s) 263, 404, 601
BseNI ACTGG 2 cut(s) 334, 472
BseRI GAGGAG 1 cut(s) 568
BseX3I CGGCCG 2 cut(s) 269, 407
BseXI GCAGC 2 cut(s) 32, 65
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 406
Bsh1285I CGRYCG 2 cut(s) 272, 410
BshFI GGCC 4 cut(s) 271, 409, 487, 526
BshNI GGYRCC 2 cut(s) 92, 250
BsiEI CGRYCG 2 cut(s) 272, 410
BsiHKAI GWGCWC 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 122
BslFI GGGAC 4 cut(s) 36, 80, 303, 441
BsmFI GGGAC 4 cut(s) 36, 80, 303, 441
BsnI GGCC 4 cut(s) 271, 409, 487, 526
BsoBI CYCGRG 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 123, 343
Bsp143I GATC 3 cut(s) 27, 60, 111
BspACI CCGC 8 cut(s) 165, 213, 245, 268, 404, 406, 546, 571
BspANI GGCC 4 cut(s) 271, 409, 487, 526
BspFNI CGCG 1 cut(s) 406
BspMI ACCTGC 4 cut(s) 166, 190, 214, 262
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 2 cut(s) 92, 250
BsrBI CCGCTC 2 cut(s) 167, 215
BsrFI RCCGGY 6 cut(s) 187, 229, 271, 385, 409, 526
BsrI ACTGG 2 cut(s) 334, 472
BssAI RCCGGY 6 cut(s) 187, 229, 271, 385, 409, 526
BssECI CCNNGG 3 cut(s) 263, 404, 601
BssMI GATC 3 cut(s) 27, 60, 111
BssNI GRCGYC 3 cut(s) 93, 307, 445
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 23, 450
Bst4CI ACNGT 2 cut(s) 338, 504
BstACI GRCGYC 3 cut(s) 93, 307, 445
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 259, 489
BstDSI CCRYGG 1 cut(s) 404
BstFNI CGCG 1 cut(s) 406
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 611
BstKTI GATC 3 cut(s) 30, 63, 114
BstMBI GATC 3 cut(s) 27, 60, 111
BstMCI CGRYCG 2 cut(s) 272, 410
BstMWI GCNNNNNNNGC 2 cut(s) 127, 570
BstNI CCWGG 2 cut(s) 23, 450
BstSCI CCNGG 2 cut(s) 21, 448
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 32, 65
BstZI CGGCCG 2 cut(s) 269, 407
BsuRI GGCC 4 cut(s) 271, 409, 487, 526
BtgI CCRYGG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 592
BveI ACCTGC 4 cut(s) 166, 190, 214, 262
Cac8I GCNNGC 2 cut(s) 259, 489
CfoI GCGC 2 cut(s) 95, 611
Cfr10I RCCGGY 6 cut(s) 187, 229, 271, 385, 409, 526
Cfr13I GGNCC 2 cut(s) 317, 455
Cfr42I CCGCGG 1 cut(s) 407
CseI GACGC 2 cut(s) 296, 434
CsiI ACCWGGT 1 cut(s) 21
Csp6I GTAC 4 cut(s) 4, 251, 334, 505
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 2 cut(s) 311, 616
CviQI GTAC 4 cut(s) 4, 251, 334, 505
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 29, 62, 113
DpnII GATC 3 cut(s) 27, 60, 111
EaeI YGGCCR 2 cut(s) 269, 407
EagI CGGCCG 2 cut(s) 269, 407
EclXI CGGCCG 2 cut(s) 269, 407
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 317, 455
Eco52I CGGCCG 2 cut(s) 269, 407
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 21, 448
EcoT14I CCWWGG 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 123
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 2 cut(s) 314, 619
FaiI YATR 8 cut(s) 76, 290, 312, 428, 474, 519, 534, 617
FaqI GGGAC 4 cut(s) 36, 80, 303, 441
FatI CATG 2 cut(s) 310, 615
FauI CCCGC 4 cut(s) 172, 220, 238, 578
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 46, 79, 269, 407
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 46, 79, 269, 407
FspI TGCGCA 1 cut(s) 610
GlaI GCGC 2 cut(s) 94, 610
GluI GCNGC 4 cut(s) 46, 79, 269, 407
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 4 cut(s) 271, 409, 487, 526
HgaI GACGC 2 cut(s) 296, 434
HhaI GCGC 2 cut(s) 95, 611
Hin1I GRCGYC 3 cut(s) 93, 307, 445
Hin1II CATG 2 cut(s) 314, 619
Hin6I GCGC 2 cut(s) 93, 609
HinP1I GCGC 2 cut(s) 93, 609
HphI GGTGA 3 cut(s) 37, 286, 424
Hpy166II GTNNAC 2 cut(s) 277, 415
Hpy188I TCNGA 4 cut(s) 153, 177, 225, 363
Hpy188III TCNNGA 2 cut(s) 53, 109
Hpy8I GTNNAC 2 cut(s) 277, 415
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 150, 378, 434, 516
HpyCH4III ACNGT 2 cut(s) 338, 504
HpyCH4V TGCA 2 cut(s) 81, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 570
Hsp92I GRCGYC 3 cut(s) 93, 307, 445
Hsp92II CATG 2 cut(s) 314, 619
HspAI GCGC 2 cut(s) 93, 609
KasI GGCGCC 1 cut(s) 92
KpnI GGTACC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 27
KspI CCGCGG 1 cut(s) 407
Kzo9I GATC 3 cut(s) 27, 60, 111
Lsp1109I GCAGC 2 cut(s) 32, 65
LweI GCATC 1 cut(s) 114
MabI ACCWGGT 1 cut(s) 21
MaeIII GTNAC 6 cut(s) 296, 434, 476, 539, 557, 565
MalI GATC 3 cut(s) 29, 62, 113
MbiI CCGCTC 2 cut(s) 167, 215
MboI GATC 3 cut(s) 27, 60, 111
MboII GAAGA 2 cut(s) 25, 602
MhlI GDGCHC 2 cut(s) 123, 343
Mly113I GGCGCC 1 cut(s) 93
MnlI CCTC 7 cut(s) 80, 147, 273, 296, 363, 402, 546
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 406
MspR9I CCNGG 2 cut(s) 23, 450
MvaI CCWGG 2 cut(s) 23, 450
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 127, 570
NarI GGCGCC 1 cut(s) 93
NdeII GATC 3 cut(s) 27, 60, 111
NlaIII CATG 2 cut(s) 314, 619
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 476, 565
NsbI TGCGCA 1 cut(s) 610
NspV TTCGAA 1 cut(s) 200
PkrI GCNGC 4 cut(s) 47, 80, 270, 408
PluTI GGCGCC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 21, 448
PspGI CCWGG 2 cut(s) 21, 448
PspPI GGNCC 2 cut(s) 317, 455
RsaI GTAC 4 cut(s) 5, 252, 335, 506
RsaNI GTAC 4 cut(s) 4, 251, 334, 505
RseI CAYNNNNRTG 1 cut(s) 35
SacII CCGCGG 1 cut(s) 407
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 4 cut(s) 46, 79, 269, 407
Sau3AI GATC 3 cut(s) 27, 60, 111
Sau96I GGNCC 2 cut(s) 317, 455
ScrFI CCNGG 2 cut(s) 23, 450
SduI GDGCHC 2 cut(s) 123, 343
SetI ASST 9 cut(s) 27, 75, 91, 160, 184, 208, 256, 355, 370
SexAI ACCWGGT 1 cut(s) 21
SfaNI GCATC 1 cut(s) 114
SfoI GGCGCC 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 407
SfuI TTCGAA 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 407
SinI GGWCC 2 cut(s) 317, 455
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 8 cut(s) 165, 213, 245, 268, 404, 406, 546, 571
SspDI GGCGCC 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 21, 448
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 2 cut(s) 338, 504
TaqI TCGA 2 cut(s) 108, 200
TauI GCSGC 2 cut(s) 271, 409
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 2 cut(s) 476, 565
TseI GCWGC 2 cut(s) 45, 78
Tsp45I GTSAC 2 cut(s) 476, 565
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 2 cut(s) 317, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.