Rw1G017080

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000455
Physical Location & Seq
Reverse (-)
37885967 .. 37894391
8425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017080.1

Sequence Viewer

Length: 771 bp
ATGCTGCTACATTGCCATGTGACTATAATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTGAAATACGTGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAAAGCATCGATATCAAAGAGCCCCAGAAGCTCAAGCCTCCTTCTAAGGATGACAAATCCACAGAAGCCAAGGACGTAGCCCGAGAAGCCCAGCCTCCTCCTCCTCCTCCGGCGCCGAAACCCGCTCCGGCTCCACCTCCGGCGCCGAAACCTGCTCCGGCTCCACCTCCGGCTCCGAAACCTCCAAAACCTGCTCCGGTTCCTCCTTGCTGTCCGCGGCCTGTGAAGCCGTGTTGTATGGATTGTTACGAAGGGCGTCGTGGTGGACCTTGTGAGACTGGGTATGGTTACGGTGGGCGTTGCCCGGCTCCGGTTCCTGCTTGCCCTCCGTGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGAGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

256

Amino Acids

27.97

Weight (kDa)

8.73

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 373, 412
AccB1I GGYRCC 3 cut(s) 206, 325, 355
AccBSI CCGCTC 1 cut(s) 338
AccII CGCG 1 cut(s) 430
AciI CCGC 5 cut(s) 336, 428, 430, 684, 721
AcoI YGGCCR 1 cut(s) 545
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcyI GRCGYC 5 cut(s) 207, 326, 356, 469, 583
AfaI GTAC 2 cut(s) 119, 644
AfiI CCNNNNNNNGG 1 cut(s) 523
AhlI ACTAGT 1 cut(s) 704
AjnI CCWGG 2 cut(s) 135, 586
AluBI AGCT 3 cut(s) 187, 244, 696
AluI AGCT 3 cut(s) 187, 244, 696
Alw26I GTCTC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 4 cut(s) 431, 545, 623, 662
ApeKI GCWGC 3 cut(s) 4, 159, 192
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 4 cut(s) 209, 328, 358, 761
AspS9I GGNCC 2 cut(s) 479, 593
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 151, 562
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 2 cut(s) 479, 593
BanI GGYRCC 3 cut(s) 206, 325, 355
BanII GRGCYC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 146, 179
BccI CCATC 2 cut(s) 641, 770
BceAI ACGGC 2 cut(s) 427, 697
BciT130I CCWGG 2 cut(s) 137, 588
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 482
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 2 cut(s) 64, 160
BfoI RGCGCY 3 cut(s) 210, 329, 359
BfuAI ACCTGC 2 cut(s) 373, 412
BglII AGATCT 1 cut(s) 43
BisI GCNGC 4 cut(s) 5, 160, 193, 431
BlsI GCNGC 4 cut(s) 6, 161, 194, 432
Bme1390I CCNGG 3 cut(s) 137, 518, 588
Bme18I GGWCC 2 cut(s) 479, 593
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 479, 593
BmrFI CCNGG 3 cut(s) 137, 518, 588
BmrI ACTGGG 2 cut(s) 501, 615
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 2 cut(s) 501, 615
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 518
Bsa29I ATCGAT 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 5 cut(s) 207, 326, 356, 469, 583
BsaJI CCNNGG 3 cut(s) 282, 428, 542
BsaWI WCCGGW 2 cut(s) 409, 523
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse118I RCCGGY 2 cut(s) 547, 664
Bse1I ACTGG 2 cut(s) 496, 610
Bse3DI GCAATG 1 cut(s) 10
BseBI CCWGG 2 cut(s) 137, 588
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 282, 428, 542
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMI GCAATG 1 cut(s) 10
BseNI ACTGG 2 cut(s) 496, 610
BseRI GAGGAG 5 cut(s) 300, 303, 306, 309, 706
BseXI GCAGC 2 cut(s) 146, 179
BseYI CCCAGC 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 430
BshFI GGCC 4 cut(s) 433, 547, 625, 664
BshNI GGYRCC 3 cut(s) 206, 325, 355
BshVI ATCGAT 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 294
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 194, 579
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 2 cut(s) 194, 579
BsnI GGCC 4 cut(s) 433, 547, 625, 664
BsoBI CYCGRG 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 43, 141, 174
BspACI CCGC 5 cut(s) 336, 428, 430, 684, 721
BspANI GGCC 4 cut(s) 433, 547, 625, 664
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 2 cut(s) 373, 412
BspT107I GGYRCC 3 cut(s) 206, 325, 355
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 547, 664
BsrI ACTGG 2 cut(s) 496, 610
BssAI RCCGGY 2 cut(s) 547, 664
BssECI CCNNGG 3 cut(s) 282, 428, 542
BssMI GATC 3 cut(s) 43, 141, 174
BssNI GRCGYC 5 cut(s) 207, 326, 356, 469, 583
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 137, 588
Bst4CI ACNGT 3 cut(s) 506, 620, 642
BstACI GRCGYC 5 cut(s) 207, 326, 356, 469, 583
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 535, 627, 757
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 2 cut(s) 428, 542
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 430
BstH2I RGCGCY 3 cut(s) 210, 329, 359
BstHHI GCGC 4 cut(s) 209, 328, 358, 761
BstKTI GATC 3 cut(s) 46, 144, 177
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 3 cut(s) 43, 141, 174
BstMWI GCNNNNNNNGC 4 cut(s) 241, 299, 439, 720
BstNI CCWGG 2 cut(s) 137, 588
BstSCI CCNGG 3 cut(s) 135, 516, 586
BstSFI CTRYAG 2 cut(s) 64, 160
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 146, 179
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 4 cut(s) 433, 547, 625, 664
BsuTUI ATCGAT 1 cut(s) 222
BtgI CCRYGG 2 cut(s) 428, 542
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 56
BveI ACCTGC 2 cut(s) 373, 412
Cac8I GCNNGC 3 cut(s) 535, 627, 757
CfoI GCGC 4 cut(s) 209, 328, 358, 761
Cfr10I RCCGGY 2 cut(s) 547, 664
Cfr13I GGNCC 2 cut(s) 479, 593
Cfr42I CCGCGG 1 cut(s) 431
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 2 cut(s) 458, 572
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 2 cut(s) 118, 643
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 2 cut(s) 17, 766
CviQI GTAC 2 cut(s) 118, 643
DdeI CTNAG 1 cut(s) 258
DinI GGCGCC 3 cut(s) 208, 327, 357
DpnI GATC 3 cut(s) 45, 143, 176
DpnII GATC 3 cut(s) 43, 141, 174
EaeI YGGCCR 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 625
Eco24I GRGCYC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 479, 593
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 135, 586
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 3 cut(s) 208, 327, 357
EheI GGCGCC 3 cut(s) 208, 327, 357
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 20, 769
FaqI GGGAC 2 cut(s) 194, 579
FatI CATG 2 cut(s) 16, 765
FauI CCCGC 2 cut(s) 343, 728
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 5, 160, 193, 431
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 4 cut(s) 5, 160, 193, 431
FspBI CTAG 1 cut(s) 705
GlaI GCGC 4 cut(s) 208, 327, 357, 760
GluI GCNGC 4 cut(s) 5, 160, 193, 431
GsaI CCCAGC 1 cut(s) 307
HaeII RGCGCY 3 cut(s) 210, 329, 359
HaeIII GGCC 4 cut(s) 433, 547, 625, 664
HgaI GACGC 2 cut(s) 458, 572
HhaI GCGC 4 cut(s) 209, 328, 358, 761
Hin1I GRCGYC 5 cut(s) 207, 326, 356, 469, 583
Hin1II CATG 2 cut(s) 20, 769
Hin6I GCGC 4 cut(s) 207, 326, 356, 759
HinP1I GCGC 4 cut(s) 207, 326, 356, 759
HinfI GANTC 1 cut(s) 31
HphI GGTGA 2 cut(s) 151, 562
Hpy166II GTNNAC 2 cut(s) 479, 553
Hpy188I TCNGA 3 cut(s) 36, 390, 737
Hpy188III TCNNGA 2 cut(s) 76, 167
Hpy8I GTNNAC 2 cut(s) 479, 553
Hpy99I CGWCG 2 cut(s) 125, 474
HpyAV CCTTC 6 cut(s) 31, 64, 264, 458, 572, 654
HpyCH4III ACNGT 3 cut(s) 506, 620, 642
HpyCH4IV ACGT 3 cut(s) 106, 116, 288
HpyCH4V TGCA 2 cut(s) 162, 195
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 299, 439, 720
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 3 cut(s) 106, 116, 288
Hsp92I GRCGYC 5 cut(s) 207, 326, 356, 469, 583
Hsp92II CATG 2 cut(s) 20, 769
HspAI GCGC 4 cut(s) 207, 326, 356, 759
KasI GGCGCC 3 cut(s) 206, 325, 355
Ksp22I TGATCA 1 cut(s) 141
KspI CCGCGG 1 cut(s) 431
Kzo9I GATC 3 cut(s) 43, 141, 174
LmnI GCTCC 8 cut(s) 343, 349, 373, 379, 391, 412, 526, 693
Lsp1109I GCAGC 2 cut(s) 146, 179
LweI GCATC 1 cut(s) 228
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 1 cut(s) 705
MaeII ACGT 3 cut(s) 106, 116, 288
MaeIII GTNAC 9 cut(s) 19, 107, 458, 500, 572, 614, 677, 707, 715
MalI GATC 3 cut(s) 45, 143, 176
MbiI CCGCTC 1 cut(s) 338
MboI GATC 3 cut(s) 43, 141, 174
MboII GAAGA 3 cut(s) 38, 139, 752
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 92
Mly113I GGCGCC 3 cut(s) 207, 326, 356
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 2 cut(s) 15, 149
MspA1I CMGCKG 1 cut(s) 430
MspR9I CCNGG 3 cut(s) 137, 518, 588
MvaI CCWGG 2 cut(s) 137, 588
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 4 cut(s) 241, 299, 439, 720
NarI GGCGCC 3 cut(s) 207, 326, 356
NciI CCSGG 1 cut(s) 518
NdeII GATC 3 cut(s) 43, 141, 174
NlaIII CATG 2 cut(s) 20, 769
NmuCI GTSAC 3 cut(s) 19, 107, 715
PceI AGGCCT 1 cut(s) 625
PfeI GAWTC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 4 cut(s) 6, 161, 194, 432
PluTI GGCGCC 3 cut(s) 210, 329, 359
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 135, 586
PspFI CCCAGC 1 cut(s) 303
PspGI CCWGG 2 cut(s) 135, 586
PspLI CGTACG 1 cut(s) 117
PspPI GGNCC 2 cut(s) 479, 593
PstI CTGCAG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 2 cut(s) 119, 644
RsaNI GTAC 2 cut(s) 118, 643
RseI CAYNNNNRTG 2 cut(s) 15, 149
SacII CCGCGG 1 cut(s) 431
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 5, 160, 193, 431
Sau3AI GATC 3 cut(s) 43, 141, 174
Sau96I GGNCC 2 cut(s) 479, 593
ScrFI CCNGG 3 cut(s) 137, 518, 588
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 2 cut(s) 64, 160
SfoI GGCGCC 3 cut(s) 208, 327, 357
Sfr303I CCGCGG 1 cut(s) 431
SgrBI CCGCGG 1 cut(s) 431
SinI GGWCC 2 cut(s) 479, 593
SmiMI CAYNNNNRTG 2 cut(s) 15, 149
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 625
SsiI CCGC 5 cut(s) 336, 428, 430, 684, 721
SspDI GGCGCC 3 cut(s) 206, 325, 355
SspMI CTAG 1 cut(s) 705
StuI AGGCCT 1 cut(s) 625
StyD4I CCNGG 3 cut(s) 135, 516, 586
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 506, 620, 642
TaiI ACGT 3 cut(s) 109, 119, 291
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 3 cut(s) 19, 107, 715
TseI GCWGC 3 cut(s) 4, 159, 192
Tsp45I GTSAC 3 cut(s) 19, 107, 715
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 479, 593
XapI RAATTY 1 cut(s) 92
XspI CTAG 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.