MD10G1337900.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
41390552 .. 41391411
860 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1337900.v1.1.491

Sequence Viewer

Length: 663 bp
ATGGTGCTGAAGGTAGATCTTCAGTGTCACAAATGCTACAAGAAGGTTAAAAAAGTTCTTTGTAAATTCCCACAAATACGAGACCAGATATACGACGAGAAGCAAAACCAAGTGGTTATCAAAGTGGTATGCTGCAGTCCAGAAAAGATGAGGGACAAGATTTGCTGCAAAGGTGGGAGTGCCATCAAAAGCATTGAGATCAAAGAGCCCGAGAAGCCCAAGGCACCCAAAGATGACGGCAAGCCCAAAGCACCCAAAGATGATGGCAAGCCTAAAGCTGACGGTAAGCCTAAAGATGAAGGCAAGCCTAAAGCTGACAGTAAGCCTAAAGATGAAGGTAAGCCTAAAGATGACGGCAAGCCTAAAGGTGACGGTAAGCCTAAAGATGACAGTACGCCTAAAGATGACGGTAAACCTAAAGTTGGCCTGCTAAATCCTGGACCCTCATCGCATGTCCAAGCGTGTTGTATGGATTGTTACCAGGGGCATGCAGCTGGGCCGTGCCACAGTGGTTATAGCGGGGGGCTAGCCTCGTACATCCAGTATGATGGTTACTATGGGAGGCCTGTGTATGACAGTTACGGTGGTGGCAACAGGGGGTATTGCGTTACCCGCCCTGACTGTTTCAGTGAAGAAAATCCCTCAGCTTGCACAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

221

Amino Acids

23.96

Weight (kDa)

8.85

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 2 cut(s) 519, 613
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 5, 29
AfaI GTAC 2 cut(s) 394, 536
AfiI CCNNNNNNNGG 1 cut(s) 422
AjnI CCWGG 2 cut(s) 436, 480
AluBI AGCT 4 cut(s) 278, 314, 494, 647
AluI AGCT 4 cut(s) 278, 314, 494, 647
Alw26I GTCTC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 3 cut(s) 424, 497, 563
ApeKI GCWGC 3 cut(s) 132, 165, 491
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 440, 497
AsuHPI GGTGA 1 cut(s) 380
AsuNHI GCTAGC 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 440
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 643
BbvI GCAGC 3 cut(s) 119, 152, 503
BccI CCATC 3 cut(s) 191, 257, 542
BceAI ACGGC 3 cut(s) 253, 370, 484
BciT130I CCWGG 2 cut(s) 438, 482
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 133
BglII AGATCT 1 cut(s) 16
BisI GCNGC 3 cut(s) 133, 166, 492
BlsI GCNGC 3 cut(s) 134, 167, 493
Bme1390I CCNGG 2 cut(s) 438, 482
Bme18I GGWCC 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 440, 497
BmiI GGNNCC 2 cut(s) 225, 442
BmrFI CCNGG 2 cut(s) 438, 482
BmtI GCTAGC 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 219, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 541
BseBI CCWGG 2 cut(s) 438, 482
BseDI CCNNGG 2 cut(s) 219, 481
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 541
BseXI GCAGC 3 cut(s) 119, 152, 503
BseYI CCCAGC 1 cut(s) 494
BshFI GGCC 3 cut(s) 426, 499, 565
BshNI GGYRCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 3 cut(s) 426, 499, 565
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 16, 198
BspACI CCGC 2 cut(s) 519, 613
BspANI GGCC 3 cut(s) 426, 499, 565
BspCNI CTCAG 1 cut(s) 656
BspLI GGNNCC 2 cut(s) 225, 442
BspMAI CTGCAG 1 cut(s) 137
BspOI GCTAGC 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 219, 481
BssMI GATC 2 cut(s) 16, 198
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 2 cut(s) 438, 482
BstC8I GCNNGC 8 cut(s) 242, 269, 305, 359, 428, 489, 528, 649
BstDEI CTNAG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 2 cut(s) 19, 201
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 16, 198
BstMWI GCNNNNNNNGC 2 cut(s) 214, 612
BstNI CCWGG 2 cut(s) 438, 482
BstNSI RCATGY 2 cut(s) 455, 491
BstSCI CCNGG 2 cut(s) 436, 480
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 3 cut(s) 119, 152, 503
BstX2I RGATCY 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 548
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 3 cut(s) 426, 499, 565
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 29, 514, 634
Cac8I GCNNGC 8 cut(s) 242, 269, 305, 359, 428, 489, 528, 649
Cfr13I GGNCC 2 cut(s) 440, 497
Csp6I GTAC 2 cut(s) 393, 535
CviAII CATG 3 cut(s) 452, 488, 658
CviQI GTAC 2 cut(s) 393, 535
DdeI CTNAG 1 cut(s) 643
DpnI GATC 2 cut(s) 18, 200
DpnII GATC 2 cut(s) 16, 198
Eco130I CCWWGG 1 cut(s) 219
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 5, 29
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 436, 480
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 455, 491, 661
FaqI GGGAC 1 cut(s) 167
FatI CATG 3 cut(s) 451, 487, 657
FauI CCCGC 2 cut(s) 512, 620
Fnu4HI GCNGC 3 cut(s) 133, 166, 492
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 3 cut(s) 133, 166, 492
FspBI CTAG 1 cut(s) 527
GluI GCNGC 3 cut(s) 133, 166, 492
GsaI CCCAGC 1 cut(s) 498
HaeIII GGCC 3 cut(s) 426, 499, 565
Hin1II CATG 3 cut(s) 455, 491, 661
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 413
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 413
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 4, 37, 293, 329
HpyCH4V TGCA 4 cut(s) 135, 168, 491, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 612
HpyF3I CTNAG 1 cut(s) 643
Hsp92II CATG 3 cut(s) 455, 491, 661
Kzo9I GATC 2 cut(s) 16, 198
Lsp1109I GCAGC 3 cut(s) 119, 152, 503
MaeI CTAG 1 cut(s) 527
MaeIII GTNAC 6 cut(s) 26, 368, 476, 551, 578, 607
MalI GATC 2 cut(s) 18, 200
MboI GATC 2 cut(s) 16, 198
MboII GAAGA 2 cut(s) 11, 644
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 65
MnlI CCTC 5 cut(s) 144, 454, 541, 555, 652
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 494
MspR9I CCNGG 2 cut(s) 438, 482
MvaI CCWGG 2 cut(s) 438, 482
MwoI GCNNNNNNNGC 2 cut(s) 214, 612
NdeII GATC 2 cut(s) 16, 198
NheI GCTAGC 1 cut(s) 526
NlaIII CATG 3 cut(s) 455, 491, 661
NlaIV GGNNCC 2 cut(s) 225, 442
NmuCI GTSAC 2 cut(s) 26, 368
NspI RCATGY 2 cut(s) 455, 491
PaeI GCATGC 1 cut(s) 491
PceI AGGCCT 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 3 cut(s) 134, 167, 493
Psp6I CCWGG 2 cut(s) 436, 480
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 2 cut(s) 436, 480
PspN4I GGNNCC 2 cut(s) 225, 442
PspPI GGNCC 2 cut(s) 440, 497
PstI CTGCAG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 2 cut(s) 394, 536
RsaNI GTAC 2 cut(s) 393, 535
RseI CAYNNNNRTG 1 cut(s) 656
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 133, 166, 492
Sau3AI GATC 2 cut(s) 16, 198
Sau96I GGNCC 2 cut(s) 440, 497
ScrFI CCNGG 2 cut(s) 438, 482
SduI GDGCHC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 133
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 656
SphI GCATGC 1 cut(s) 491
Sse9I AATT 1 cut(s) 65
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 2 cut(s) 519, 613
SspMI CTAG 1 cut(s) 527
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 436, 480
StyI CCWWGG 1 cut(s) 219
TasI AATT 1 cut(s) 65
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 3 cut(s) 29, 514, 634
TseFI GTSAC 2 cut(s) 26, 368
TseI GCWGC 3 cut(s) 132, 165, 491
Tsp45I GTSAC 2 cut(s) 26, 368
TspDTI ATGAA 2 cut(s) 312, 348
TspRI CASTG 3 cut(s) 29, 514, 634
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 1 cut(s) 65
XceI RCATGY 2 cut(s) 455, 491
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.