Prupe.4G005100_v2.0.a1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000455
Physical Location & Seq
Forward (+)
307541 .. 309009
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G005100.1

Sequence Viewer

Length: 576 bp
ATGGCAGAAAAAGAAAAGGAGACGATAATGGTGCTGAAGGTGGACCTTCAGTGTCACAAATGCTATATGAAGGTCAAAAAAGTTCTCTGCAAAATCCCTCAAATACAAGACCAGATATACGACGAGAAGCAAAACCAGGTGGTCATCAAAGTGGTATGCTGCAGTCCAGAGAAGATAAGGGACAGGATACGCTGCAAAGGTGGGGGAGCCATCAAGTGCATTCAGATCAAAGAGAAACCCAAGGAGGAGAAACCCAAGGAGGAGAAGCCCAAGGAGGAGAAACCCAAGGAGGAGAAGCCTAAAACTCCCTCACCAAACCGTGGGCCTCCGTGTGTTCGTGTAGGCGGTTACCCAGTGAACGGGAACGCGTGCTGTATGGATTGTTACCATGGGCATCCTGGTGGGCCATGCCAGACTGGCTATGGCGGAGTAGCCCTATACATTCAGTATGATGGTTACTATGGAAGGCCTGTGTGCGGCAGTTATGGCGGTGGCAGGAGCTACAATACTAACTATTGTGTTGCCCGCTCTGACTGTTTCAGTGAAGAAAATCCCCAAGGCTGCACAGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

192

Amino Acids

21.38

Weight (kDa)

8.78

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 528
AccII CGCG 1 cut(s) 368
AciI CCGC 5 cut(s) 345, 426, 477, 489, 526
AcuI CTGAAG 2 cut(s) 32, 56
AfiI CCNNNNNNNGG 3 cut(s) 320, 359, 476
AflIII ACRYGT 1 cut(s) 366
AjnI CCWGG 2 cut(s) 135, 397
AluBI AGCT 1 cut(s) 501
AluI AGCT 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 3 cut(s) 323, 404, 467
ApeKI GCWGC 3 cut(s) 159, 192, 561
AspS9I GGNCC 3 cut(s) 43, 323, 404
AsuHPI GGTGA 1 cut(s) 303
AvaII GGWCC 1 cut(s) 43
BbvI GCAGC 3 cut(s) 146, 179, 548
BccI CCATC 2 cut(s) 218, 446
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 2 cut(s) 137, 399
BciVI GTATCC 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 160
BfuI GTATCC 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 417
BisI GCNGC 4 cut(s) 160, 193, 478, 562
BlsI GCNGC 4 cut(s) 161, 194, 479, 563
Bme1390I CCNGG 2 cut(s) 137, 399
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 3 cut(s) 43, 323, 404
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 137, 399
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 347
BsaJI CCNNGG 7 cut(s) 240, 255, 270, 285, 319, 388, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 359, 476
Bse1I ACTGG 2 cut(s) 353, 421
BseBI CCWGG 2 cut(s) 137, 399
BseDI CCNNGG 7 cut(s) 240, 255, 270, 285, 319, 388, 556
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 3 cut(s) 320, 359, 476
BseNI ACTGG 2 cut(s) 353, 421
BseRI GAGGAG 4 cut(s) 260, 275, 290, 305
BseXI GCAGC 3 cut(s) 146, 179, 548
BsgI GTGCAG 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 3 cut(s) 325, 406, 469
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 320, 359, 476
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 3 cut(s) 325, 406, 469
Bsp143I GATC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 5 cut(s) 345, 426, 477, 489, 526
BspANI GGCC 3 cut(s) 325, 406, 469
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 164
BsrBI CCGCTC 1 cut(s) 528
BsrI ACTGG 2 cut(s) 353, 421
BssECI CCNNGG 7 cut(s) 240, 255, 270, 285, 319, 388, 556
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 6 cut(s) 240, 255, 270, 285, 388, 556
Bst2UI CCWGG 2 cut(s) 137, 399
Bst4CI ACNGT 3 cut(s) 320, 536, 568
BstC8I GCNNGC 2 cut(s) 370, 526
BstDSI CCRYGG 2 cut(s) 319, 388
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 417, 486
BstNI CCWGG 2 cut(s) 137, 399
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 135, 397
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 146, 179, 548
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 3 cut(s) 325, 406, 469
BtgI CCRYGG 2 cut(s) 319, 388
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 3 cut(s) 56, 360, 547
Cac8I GCNNGC 2 cut(s) 370, 526
Cfr13I GGNCC 3 cut(s) 43, 323, 404
CsiI ACCWGGT 1 cut(s) 135
CviAII CATG 3 cut(s) 389, 408, 571
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 441
Eco130I CCWWGG 6 cut(s) 240, 255, 270, 285, 388, 556
Eco147I AGGCCT 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 32, 56
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 135, 397
EcoT14I CCWWGG 6 cut(s) 240, 255, 270, 285, 388, 556
ErhI CCWWGG 6 cut(s) 240, 255, 270, 285, 388, 556
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 3 cut(s) 392, 411, 574
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 388, 407, 570
FauI CCCGC 1 cut(s) 533
Fnu4HI GCNGC 4 cut(s) 160, 193, 478, 562
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 4 cut(s) 160, 193, 478, 562
GluI GCNGC 4 cut(s) 160, 193, 478, 562
HaeIII GGCC 3 cut(s) 325, 406, 469
Hin1II CATG 3 cut(s) 392, 411, 574
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 43, 358
Hpy188I TCNGA 2 cut(s) 225, 532
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 2 cut(s) 43, 358
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 31, 56, 64, 459
HpyCH4III ACNGT 3 cut(s) 320, 536, 568
HpyCH4V TGCA 5 cut(s) 90, 162, 195, 219, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 417, 486
Hsp92II CATG 3 cut(s) 392, 411, 574
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 206, 498
Lsp1109I GCAGC 3 cut(s) 146, 179, 548
LweI GCATC 1 cut(s) 403
MabI ACCWGGT 1 cut(s) 135
MaeIII GTNAC 4 cut(s) 53, 347, 383, 455
MalI GATC 1 cut(s) 227
MbiI CCGCTC 1 cut(s) 528
MboI GATC 1 cut(s) 225
MboII GAAGA 2 cut(s) 184, 557
MluI ACGCGT 1 cut(s) 366
MnlI CCTC 7 cut(s) 108, 238, 253, 268, 283, 319, 336
MslI CAYNNNNRTG 3 cut(s) 149, 399, 569
MspR9I CCNGG 2 cut(s) 137, 399
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 2 cut(s) 137, 399
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 417, 486
NcoI CCATGG 1 cut(s) 388
NdeII GATC 1 cut(s) 225
NlaIII CATG 3 cut(s) 392, 411, 574
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 53
PceI AGGCCT 1 cut(s) 469
PctI GAATGC 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 4 cut(s) 161, 194, 479, 563
Psp6I CCWGG 2 cut(s) 135, 397
PspEI GGTNACC 1 cut(s) 347
PspGI CCWGG 2 cut(s) 135, 397
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 3 cut(s) 43, 323, 404
PstI CTGCAG 1 cut(s) 164
RseI CAYNNNNRTG 3 cut(s) 149, 399, 569
SatI GCNGC 4 cut(s) 160, 193, 478, 562
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 3 cut(s) 43, 323, 404
ScrFI CCNGG 2 cut(s) 137, 399
SetI ASST 6 cut(s) 42, 48, 75, 141, 202, 503
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 3 cut(s) 149, 399, 569
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 5 cut(s) 345, 426, 477, 489, 526
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 135, 397
StyI CCWWGG 6 cut(s) 240, 255, 270, 285, 388, 556
TaaI ACNGT 3 cut(s) 320, 536, 568
TauI GCSGC 1 cut(s) 480
TscAI CASTG 3 cut(s) 56, 360, 547
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 3 cut(s) 159, 192, 561
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 3 cut(s) 56, 360, 547
Van91I CCANNNNNTGG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 43
XcmI CCANNNNNNNNNTGG 2 cut(s) 395, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.