Rmu_sc0000157.1_g000022

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000157.1
OG0000455
Physical Location & Seq
Forward (+)
102688 .. 103447
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000157.1_g000022.1.cds

Sequence Viewer

Length: 402 bp
atgggggaaaagaaggtgactataatgattctgaaggttgaccttcagtgtgaggaatgctacaggaaggtcaagaacgttctctgtaaattcccacgtgagtctctcttttctcttccagttcggttcaataatattgtgagtcctggtggtccctgcgaaacttaccctccgcggccggtgaacacgtgttgtacggattgttacgaagggcgtcctggcggtccctgcgaaactgggtatggttacggcgggcctgtcccttacatacagtatgatggccactatggaaggccggtgtatgatagttacggcggtgggaggagctctactactagttactgcgtgacccgccccgattgtttcagtgaagaaaatccccaagcgtgcgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

133

Amino Acids

14.76

Weight (kDa)

6.54

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 175
AciI CCGC 6 cut(s) 173, 175, 222, 252, 315, 352
AclI AACGTT 1 cut(s) 78
AcoI YGGCCR 2 cut(s) 176, 280
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcvI CACGTG 2 cut(s) 98, 189
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 196
AflIII ACRYGT 2 cut(s) 186, 188
AgsI TTSAA 1 cut(s) 130
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 2 cut(s) 145, 217
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 108
AoxI GGCC 4 cut(s) 176, 254, 280, 293
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 152, 224, 254
AsuHPI GGTGA 2 cut(s) 28, 193
AvaII GGWCC 2 cut(s) 152, 224
BalI TGGCCA 1 cut(s) 282
BanII GRGCYC 1 cut(s) 329
BbrPI CACGTG 2 cut(s) 98, 189
Bbv12I GWGCWC 1 cut(s) 329
BccI CCATC 2 cut(s) 272, 401
BceAI ACGGC 2 cut(s) 265, 328
BciT130I CCWGG 2 cut(s) 147, 219
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 61
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 147, 219
Bme18I GGWCC 2 cut(s) 152, 224
BmgT120I GGNCC 3 cut(s) 152, 224, 254
BmiI GGNNCC 2 cut(s) 154, 226
BmrFI CCNGG 2 cut(s) 147, 219
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
BsaAI YACGTR 2 cut(s) 98, 189
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bse118I RCCGGY 2 cut(s) 178, 295
Bse1I ACTGG 2 cut(s) 119, 241
BseBI CCWGG 2 cut(s) 147, 219
BseDI CCNNGG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 119, 241
BseRI GAGGAG 1 cut(s) 337
BseX3I CGGCCG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 4 cut(s) 178, 256, 282, 295
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 179, 296
BslFI GGGAC 3 cut(s) 138, 210, 245
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 3 cut(s) 138, 210, 245
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 4 cut(s) 178, 256, 282, 295
Bsp1286I GDGCHC 1 cut(s) 329
BspACI CCGC 6 cut(s) 173, 175, 222, 252, 315, 352
BspANI GGCC 4 cut(s) 178, 256, 282, 295
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 154, 226
BsrFI RCCGGY 2 cut(s) 178, 295
BsrI ACTGG 2 cut(s) 119, 241
BssAI RCCGGY 2 cut(s) 178, 295
BssECI CCNNGG 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 147, 219
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 214
BstBAI YACGTR 2 cut(s) 98, 189
BstC8I GCNNGC 2 cut(s) 254, 388
BstDSI CCRYGG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 392
BstMAI GTCTC 1 cut(s) 108
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 2 cut(s) 228, 351
BstNI CCWGG 2 cut(s) 147, 219
BstSCI CCNGG 2 cut(s) 145, 217
BstSFI CTRYAG 1 cut(s) 61
BstUI CGCG 1 cut(s) 175
BstZI CGGCCG 1 cut(s) 176
BsuRI GGCC 4 cut(s) 178, 256, 282, 295
BtgI CCRYGG 1 cut(s) 173
BtsIMutI CAGTG 2 cut(s) 53, 373
Cac8I GCNNGC 2 cut(s) 254, 388
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 2 cut(s) 178, 295
Cfr13I GGNCC 3 cut(s) 152, 224, 254
Cfr42I CCGCGG 1 cut(s) 176
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 195
CviAII CATG 1 cut(s) 397
CviJI RGCY 5 cut(s) 178, 256, 282, 295, 327
CviKI_1 RGCY 5 cut(s) 178, 256, 282, 295, 327
CviQI GTAC 1 cut(s) 195
EaeI YGGCCR 2 cut(s) 176, 280
EagI CGGCCG 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 327
EclXI CGGCCG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 152, 224
Eco52I CGGCCG 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 327
Eco57I CTGAAG 2 cut(s) 29, 53
Eco72I CACGTG 2 cut(s) 98, 189
EcoICRI GAGCTC 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 145, 217
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 1 cut(s) 400
FaiI YATR 7 cut(s) 23, 243, 269, 276, 288, 303, 398
FaqI GGGAC 3 cut(s) 138, 210, 245
FatI CATG 1 cut(s) 396
FauI CCCGC 2 cut(s) 245, 359
Fnu4HI GCNGC 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 4 cut(s) 178, 256, 282, 295
HapII CCGG 2 cut(s) 179, 296
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 3 cut(s) 28, 101, 142
HpaII CCGG 2 cut(s) 179, 296
HphI GGTGA 2 cut(s) 28, 193
Hpy166II GTNNAC 2 cut(s) 40, 184
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 2 cut(s) 40, 184
HpyAV CCTTC 6 cut(s) 7, 28, 53, 61, 203, 285
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 3 cut(s) 78, 97, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 351
HpySE526I ACGT 3 cut(s) 78, 97, 188
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 1 cut(s) 390
KspI CCGCGG 1 cut(s) 176
LmnI GCTCC 1 cut(s) 324
MaeI CTAG 1 cut(s) 336
MaeII ACGT 3 cut(s) 78, 97, 188
MaeIII GTNAC 6 cut(s) 16, 203, 245, 308, 338, 346
MboII GAAGA 2 cut(s) 107, 383
MhlI GDGCHC 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 2 cut(s) 110, 151
MnlI CCTC 3 cut(s) 46, 180, 315
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 179, 296
MspR9I CCNGG 2 cut(s) 147, 219
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 2 cut(s) 147, 219
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 228, 351
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 2 cut(s) 154, 226
NmuCI GTSAC 2 cut(s) 16, 346
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 2 cut(s) 109, 150
PmaCI CACGTG 2 cut(s) 98, 189
PmlI CACGTG 2 cut(s) 98, 189
PpsI GAGTC 2 cut(s) 109, 150
Ppu21I YACGTR 2 cut(s) 98, 189
Psp124BI GAGCTC 1 cut(s) 329
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 145, 217
PspCI CACGTG 2 cut(s) 98, 189
PspGI CCWGG 2 cut(s) 145, 217
PspN4I GGNNCC 2 cut(s) 154, 226
PspPI GGNCC 3 cut(s) 152, 224, 254
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SacI GAGCTC 1 cut(s) 329
SacII CCGCGG 1 cut(s) 176
SatI GCNGC 1 cut(s) 176
Sau96I GGNCC 3 cut(s) 152, 224, 254
SchI GAGTC 2 cut(s) 110, 151
ScrFI CCNGG 2 cut(s) 147, 219
SduI GDGCHC 1 cut(s) 329
SetI ASST 8 cut(s) 18, 39, 45, 72, 81, 100, 191, 329
SfcI CTRYAG 1 cut(s) 61
Sfr303I CCGCGG 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 176
SinI GGWCC 2 cut(s) 152, 224
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 1 cut(s) 89
SsiI CCGC 6 cut(s) 173, 175, 222, 252, 315, 352
SspI AATATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 145, 217
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 3 cut(s) 81, 100, 191
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 2 cut(s) 53, 373
TseFI GTSAC 2 cut(s) 16, 346
Tsp45I GTSAC 2 cut(s) 16, 346
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 53, 373
VpaK11BI GGWCC 2 cut(s) 152, 224
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.