Rw1G017040

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000455
Physical Location & Seq
Reverse (-)
37811302 .. 37812684
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017040.1

Sequence Viewer

Length: 627 bp
ATGGGAGAAAAGAAGGTGACTATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTGAAATACGTGACCAGACATACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGACGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAAGAAAAGCCCAAAGAGAAACCAAAGGAAGATAAACCACCCAAAGAAGGCGAGAAGCCGAAGGTTGAGTCGGAGTCGAAGCCGAAGCCGAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCCTGGTTGTCCCTGCGAAACTCGCCCTCCGCGGCGGCCGGTGTACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTACGATAGTTACGGCGGTGGGAGGAGCTATACTGCTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

208

Amino Acids

23.6

Weight (kDa)

8.67

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 397
AciI CCGC 5 cut(s) 395, 397, 400, 540, 577
AcoI YGGCCR 1 cut(s) 401
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 26, 50
AcyI GRCGYC 3 cut(s) 201, 364, 439
AfaI GTAC 2 cut(s) 410, 500
AfiI CCNNNNNNNGG 1 cut(s) 287
AjnI CCWGG 3 cut(s) 129, 367, 442
AluBI AGCT 2 cut(s) 181, 552
AluI AGCT 2 cut(s) 181, 552
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 401, 518
ApeKI GCWGC 2 cut(s) 153, 186
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 28, 145, 209
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 140, 173
BccI CCATC 2 cut(s) 497, 626
BceAI ACGGC 1 cut(s) 553
BciT130I CCWGG 3 cut(s) 131, 369, 444
BclI TGATCA 1 cut(s) 135
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 2 cut(s) 58, 154
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 154, 187, 398, 401
BlsI GCNGC 4 cut(s) 155, 188, 399, 402
Bme1390I CCNGG 3 cut(s) 131, 369, 444
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 3 cut(s) 131, 369, 444
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 101
BsaHI GRCGYC 3 cut(s) 201, 364, 439
BsaJI CCNNGG 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse118I RCCGGY 2 cut(s) 403, 520
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 3 cut(s) 131, 369, 444
BseDI CCNNGG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 562
BseX3I CGGCCG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 140, 173
Bsh1236I CGCG 1 cut(s) 397
Bsh1285I CGRYCG 1 cut(s) 404
BshFI GGCC 2 cut(s) 403, 520
BsiEI CGRYCG 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 404, 521
BslFI GGGAC 3 cut(s) 188, 360, 435
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 3 cut(s) 188, 360, 435
BsnI GGCC 2 cut(s) 403, 520
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 4 cut(s) 37, 135, 168, 219
BspACI CCGC 5 cut(s) 395, 397, 400, 540, 577
BspANI GGCC 2 cut(s) 403, 520
BspFNI CGCG 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 158
BsrFI RCCGGY 2 cut(s) 403, 520
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 2 cut(s) 403, 520
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 4 cut(s) 37, 135, 168, 219
BssNI GRCGYC 3 cut(s) 201, 364, 439
Bst2UI CCWGG 3 cut(s) 131, 369, 444
Bst4CI ACNGT 2 cut(s) 476, 498
BstACI GRCGYC 3 cut(s) 201, 364, 439
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 483, 613
BstDSI CCRYGG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 4 cut(s) 40, 138, 171, 222
BstMBI GATC 4 cut(s) 37, 135, 168, 219
BstMCI CGRYCG 1 cut(s) 404
BstMWI GCNNNNNNNGC 3 cut(s) 235, 387, 576
BstNI CCWGG 3 cut(s) 131, 369, 444
BstSCI CCNGG 3 cut(s) 129, 367, 442
BstSFI CTRYAG 2 cut(s) 58, 154
BstUI CGCG 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 140, 173
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BstZI CGGCCG 1 cut(s) 401
BsuRI GGCC 2 cut(s) 403, 520
BtgI CCRYGG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 50, 598
Cac8I GCNNGC 2 cut(s) 483, 613
CfoI GCGC 1 cut(s) 617
Cfr10I RCCGGY 2 cut(s) 403, 520
Cfr13I GGNCC 1 cut(s) 449
Cfr42I CCGCGG 1 cut(s) 398
CseI GACGC 3 cut(s) 209, 353, 428
CsiI ACCWGGT 1 cut(s) 129
Csp6I GTAC 2 cut(s) 409, 499
CviAII CATG 1 cut(s) 622
CviQI GTAC 2 cut(s) 409, 499
DpnI GATC 4 cut(s) 39, 137, 170, 221
DpnII GATC 4 cut(s) 37, 135, 168, 219
EaeI YGGCCR 1 cut(s) 401
EagI CGGCCG 1 cut(s) 401
EclXI CGGCCG 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 449
Eco52I CGGCCG 1 cut(s) 401
Eco57I CTGAAG 2 cut(s) 26, 50
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 3 cut(s) 129, 367, 442
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 1 cut(s) 625
FaqI GGGAC 3 cut(s) 188, 360, 435
FatI CATG 1 cut(s) 621
FauI CCCGC 1 cut(s) 584
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 154, 187, 398, 401
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 154, 187, 398, 401
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 616
GluI GCNGC 4 cut(s) 154, 187, 398, 401
HaeIII GGCC 2 cut(s) 403, 520
HapII CCGG 2 cut(s) 404, 521
HgaI GACGC 3 cut(s) 209, 353, 428
HhaI GCGC 1 cut(s) 617
Hin1I GRCGYC 3 cut(s) 201, 364, 439
Hin1II CATG 1 cut(s) 625
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HinfI GANTC 3 cut(s) 25, 308, 314
HpaII CCGG 2 cut(s) 404, 521
HphI GGTGA 3 cut(s) 28, 145, 209
Hpy166II GTNNAC 2 cut(s) 409, 526
Hpy188I TCNGA 2 cut(s) 30, 313
Hpy188III TCNNGA 3 cut(s) 70, 161, 217
Hpy8I GTNNAC 2 cut(s) 409, 526
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 7 cut(s) 7, 25, 58, 281, 295, 428, 510
HpyCH4III ACNGT 2 cut(s) 476, 498
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 156, 189
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 387, 576
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 3 cut(s) 201, 364, 439
Hsp92II CATG 1 cut(s) 625
HspAI GCGC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 135
KspI CCGCGG 1 cut(s) 398
Kzo9I GATC 4 cut(s) 37, 135, 168, 219
LmnI GCTCC 1 cut(s) 549
Lsp1109I GCAGC 2 cut(s) 140, 173
LweI GCATC 1 cut(s) 222
MabI ACCWGGT 1 cut(s) 129
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 9 cut(s) 16, 101, 197, 353, 428, 470, 533, 563, 571
MalI GATC 4 cut(s) 39, 137, 170, 221
MboI GATC 4 cut(s) 37, 135, 168, 219
MboII GAAGA 5 cut(s) 32, 133, 281, 343, 608
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 86
MlyI GAGTC 2 cut(s) 317, 323
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 4 cut(s) 188, 353, 402, 540
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 2 cut(s) 404, 521
MspR9I CCNGG 3 cut(s) 131, 369, 444
MvaI CCWGG 3 cut(s) 131, 369, 444
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 3 cut(s) 235, 387, 576
NdeII GATC 4 cut(s) 37, 135, 168, 219
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 4 cut(s) 16, 101, 197, 571
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 155, 188, 399, 402
PleI GAGTC 2 cut(s) 316, 322
PpsI GAGTC 2 cut(s) 316, 322
Ppu21I YACGTR 1 cut(s) 101
Psp6I CCWGG 3 cut(s) 129, 367, 442
PspGI CCWGG 3 cut(s) 129, 367, 442
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 2 cut(s) 410, 500
RsaNI GTAC 2 cut(s) 409, 499
RseI CAYNNNNRTG 1 cut(s) 143
SacII CCGCGG 1 cut(s) 398
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 4 cut(s) 154, 187, 398, 401
Sau3AI GATC 4 cut(s) 37, 135, 168, 219
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 2 cut(s) 317, 323
ScrFI CCNGG 3 cut(s) 131, 369, 444
SduI GDGCHC 1 cut(s) 231
SetI ASST 9 cut(s) 18, 36, 69, 103, 135, 183, 199, 306, 554
SexAI ACCWGGT 1 cut(s) 129
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 2 cut(s) 58, 154
Sfr303I CCGCGG 1 cut(s) 398
SgrBI CCGCGG 1 cut(s) 398
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 1 cut(s) 86
SsiI CCGC 5 cut(s) 395, 397, 400, 540, 577
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 3 cut(s) 129, 367, 442
TaaI ACNGT 2 cut(s) 476, 498
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 216, 317
TasI AATT 1 cut(s) 86
TauI GCSGC 2 cut(s) 400, 403
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 50, 598
TseFI GTSAC 4 cut(s) 16, 101, 197, 571
TseI GCWGC 2 cut(s) 153, 186
Tsp45I GTSAC 4 cut(s) 16, 101, 197, 571
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 2 cut(s) 50, 598
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.