Rmu_co8238747.1_g000001

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8238747.1
OG0000455
Physical Location & Seq
Reverse (-)
100 .. 756
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8238747.1_g000001.1.cds

Sequence Viewer

Length: 657 bp
ctggtgatcatcaaagtggtctgctgtagtcctgaaaagatcagggacaagctatgctgcaaaggaggtggcgccattaagagcatcgagatcaaagagcccgagaagctcaagcctccttctacggatgacaaatccaaacaaacactagctgcaggtaaaaccaaagatgccaaggacgtgtctaaagagaaacaaaaggaagataaacccgaagacggcgagaagccgaaggatgagtcgaagcagaagcgtgctccggttactgcttgttctccgcggccggtgaacccgtgctgtatggattgttatggagggcgtcctggtggtccctgcgaaactcgccctccgcggcggcagatgaacccgtgttgtatggattgttacgaagggcgtcctggtggtccctgcgaaactcgccatccgcggcggccggtgaacccgtgttgtatggattgttacaaagggcgtcctggtggtccctgcgaaactgggtatggttacggtaggcttgccctttacatgcagtacgatggctactatggaaggccgatctatgatagttacggcggtgggaggagctatactactagttactgcgtgacccgccccgattgtttcagtgaagaaaatccccaagcgtgcgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

218

Amino Acids

24.09

Weight (kDa)

8.68

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 3 cut(s) 280, 352, 427
AcoI YGGCCR 2 cut(s) 281, 431
AcyI GRCGYC 4 cut(s) 72, 319, 394, 469
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 180
AhlI ACTAGT 1 cut(s) 590
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 3 cut(s) 322, 397, 472
AluBI AGCT 4 cut(s) 52, 109, 152, 582
AluI AGCT 4 cut(s) 52, 109, 152, 582
Alw21I GWGCWC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 3 cut(s) 281, 431, 548
ApeKI GCWGC 2 cut(s) 57, 152
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 2 cut(s) 74, 647
AspS9I GGNCC 3 cut(s) 329, 404, 479
AsuHPI GGTGA 3 cut(s) 16, 298, 448
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 3 cut(s) 329, 404, 479
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 44, 139
BccI CCATC 3 cut(s) 429, 527, 656
BceAI ACGGC 2 cut(s) 235, 583
BciT130I CCWGG 3 cut(s) 324, 399, 474
BclI TGATCA 1 cut(s) 6
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 2 cut(s) 149, 591
BfmI CTRYAG 2 cut(s) 25, 153
BfoI RGCGCY 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 7 cut(s) 58, 153, 281, 353, 356, 428, 431
BlsI GCNGC 7 cut(s) 59, 154, 282, 354, 357, 429, 432
Bme1390I CCNGG 3 cut(s) 324, 399, 474
Bme18I GGWCC 3 cut(s) 329, 404, 479
BmeT110I CYCGRG 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 3 cut(s) 329, 404, 479
BmiI GGNNCC 4 cut(s) 73, 331, 406, 481
BmrFI CCNGG 3 cut(s) 324, 399, 474
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 93, 160
BmuI ACTGGG 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 95
BsaHI GRCGYC 4 cut(s) 72, 319, 394, 469
BsaJI CCNNGG 4 cut(s) 174, 278, 350, 425
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 2 cut(s) 283, 433
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 3 cut(s) 324, 399, 474
BseDI CCNNGG 4 cut(s) 174, 278, 350, 425
BseGI GGATG 3 cut(s) 133, 241, 421
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 1 cut(s) 592
BseX3I CGGCCG 2 cut(s) 281, 431
BseXI GCAGC 2 cut(s) 44, 139
Bsh1236I CGCG 3 cut(s) 280, 352, 427
Bsh1285I CGRYCG 2 cut(s) 284, 434
BshFI GGCC 3 cut(s) 283, 433, 550
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 2 cut(s) 284, 434
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 260, 284, 434
BslFI GGGAC 4 cut(s) 59, 315, 390, 465
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 4 cut(s) 59, 315, 390, 465
BsnI GGCC 3 cut(s) 283, 433, 550
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 102, 259
Bsp143I GATC 4 cut(s) 6, 39, 90, 552
BspANI GGCC 3 cut(s) 283, 433, 550
BspFNI CGCG 3 cut(s) 280, 352, 427
BspLI GGNNCC 4 cut(s) 73, 331, 406, 481
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 283, 433
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 2 cut(s) 283, 433
BssECI CCNNGG 4 cut(s) 174, 278, 350, 425
BssMI GATC 4 cut(s) 6, 39, 90, 552
BssNI GRCGYC 4 cut(s) 72, 319, 394, 469
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 3 cut(s) 324, 399, 474
Bst4CI ACNGT 1 cut(s) 506
BstACI GRCGYC 4 cut(s) 72, 319, 394, 469
BstC8I GCNNGC 3 cut(s) 255, 513, 643
BstDSI CCRYGG 3 cut(s) 278, 350, 425
BstF5I GGATG 3 cut(s) 133, 241, 421
BstFNI CGCG 3 cut(s) 280, 352, 427
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 647
BstKTI GATC 4 cut(s) 9, 42, 93, 555
BstMBI GATC 4 cut(s) 6, 39, 90, 552
BstMCI CGRYCG 2 cut(s) 284, 434
BstMWI GCNNNNNNNGC 4 cut(s) 106, 342, 417, 606
BstNI CCWGG 3 cut(s) 324, 399, 474
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 3 cut(s) 322, 397, 472
BstSFI CTRYAG 2 cut(s) 25, 153
BstUI CGCG 3 cut(s) 280, 352, 427
BstV1I GCAGC 2 cut(s) 44, 139
BstV2I GAAGAC 1 cut(s) 222
BstZI CGGCCG 2 cut(s) 281, 431
BsuRI GGCC 3 cut(s) 283, 433, 550
BtgI CCRYGG 3 cut(s) 278, 350, 425
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 3 cut(s) 133, 241, 421
BtsIMutI CAGTG 1 cut(s) 628
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 3 cut(s) 255, 513, 643
CfoI GCGC 2 cut(s) 74, 647
Cfr10I RCCGGY 2 cut(s) 283, 433
Cfr13I GGNCC 3 cut(s) 329, 404, 479
Cfr42I CCGCGG 3 cut(s) 281, 353, 428
CseI GACGC 3 cut(s) 308, 383, 458
Csp6I GTAC 1 cut(s) 529
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 2 cut(s) 523, 652
CviQI GTAC 1 cut(s) 529
DinI GGCGCC 1 cut(s) 73
DpnI GATC 4 cut(s) 8, 41, 92, 554
DpnII GATC 4 cut(s) 6, 39, 90, 552
EaeI YGGCCR 2 cut(s) 281, 431
EagI CGGCCG 2 cut(s) 281, 431
EclXI CGGCCG 2 cut(s) 281, 431
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 329, 404, 479
Eco52I CGGCCG 2 cut(s) 281, 431
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 3 cut(s) 322, 397, 472
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 2 cut(s) 526, 655
FaqI GGGAC 4 cut(s) 59, 315, 390, 465
FatI CATG 2 cut(s) 522, 651
FauI CCCGC 1 cut(s) 614
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 7 cut(s) 58, 153, 281, 353, 356, 428, 431
FokI GGATG 3 cut(s) 140, 248, 408
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 7 cut(s) 58, 153, 281, 353, 356, 428, 431
FspBI CTAG 2 cut(s) 149, 591
GlaI GCGC 2 cut(s) 73, 646
GluI GCNGC 7 cut(s) 58, 153, 281, 353, 356, 428, 431
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 3 cut(s) 283, 433, 550
HapII CCGG 3 cut(s) 260, 284, 434
HgaI GACGC 3 cut(s) 308, 383, 458
HhaI GCGC 2 cut(s) 74, 647
Hin1I GRCGYC 4 cut(s) 72, 319, 394, 469
Hin1II CATG 2 cut(s) 526, 655
Hin6I GCGC 2 cut(s) 72, 645
HinP1I GCGC 2 cut(s) 72, 645
HinfI GANTC 1 cut(s) 239
HpaII CCGG 3 cut(s) 260, 284, 434
HphI GGTGA 3 cut(s) 16, 298, 448
Hpy166II GTNNAC 2 cut(s) 289, 439
Hpy188III TCNNGA 2 cut(s) 32, 88
Hpy8I GTNNAC 2 cut(s) 289, 439
HpyAV CCTTC 4 cut(s) 129, 226, 383, 540
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 60, 155, 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 342, 417, 606
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 4 cut(s) 72, 319, 394, 469
Hsp92II CATG 2 cut(s) 526, 655
HspAI GCGC 2 cut(s) 72, 645
KasI GGCGCC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 6
KspI CCGCGG 3 cut(s) 281, 353, 428
Kzo9I GATC 4 cut(s) 6, 39, 90, 552
LmnI GCTCC 2 cut(s) 262, 579
Lsp1109I GCAGC 2 cut(s) 44, 139
LweI GCATC 2 cut(s) 93, 160
MaeI CTAG 2 cut(s) 149, 591
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 7 cut(s) 262, 383, 458, 500, 563, 593, 601
MalI GATC 4 cut(s) 8, 41, 92, 554
MboI GATC 4 cut(s) 6, 39, 90, 552
MboII GAAGA 3 cut(s) 215, 227, 638
MhlI GDGCHC 2 cut(s) 102, 259
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 5 cut(s) 59, 126, 308, 357, 570
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 3 cut(s) 280, 352, 427
MspI CCGG 3 cut(s) 260, 284, 434
MspR9I CCNGG 3 cut(s) 324, 399, 474
MvaI CCWGG 3 cut(s) 324, 399, 474
MvnI CGCG 3 cut(s) 280, 352, 427
MwoI GCNNNNNNNGC 4 cut(s) 106, 342, 417, 606
NarI GGCGCC 1 cut(s) 72
NdeII GATC 4 cut(s) 6, 39, 90, 552
NlaIII CATG 2 cut(s) 526, 655
NlaIV GGNNCC 4 cut(s) 73, 331, 406, 481
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 526
PkrI GCNGC 7 cut(s) 59, 154, 282, 354, 357, 429, 432
PleI GAGTC 1 cut(s) 247
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 247
Psp6I CCWGG 3 cut(s) 322, 397, 472
PspGI CCWGG 3 cut(s) 322, 397, 472
PspN4I GGNNCC 4 cut(s) 73, 331, 406, 481
PspPI GGNCC 3 cut(s) 329, 404, 479
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 14
SacII CCGCGG 3 cut(s) 281, 353, 428
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 7 cut(s) 58, 153, 281, 353, 356, 428, 431
Sau3AI GATC 4 cut(s) 6, 39, 90, 552
Sau96I GGNCC 3 cut(s) 329, 404, 479
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 3 cut(s) 324, 399, 474
SduI GDGCHC 2 cut(s) 102, 259
SetI ASST 7 cut(s) 54, 70, 111, 154, 160, 183, 584
SfaNI GCATC 2 cut(s) 93, 160
SfcI CTRYAG 2 cut(s) 25, 153
SfoI GGCGCC 1 cut(s) 73
Sfr303I CCGCGG 3 cut(s) 281, 353, 428
SgrBI CCGCGG 3 cut(s) 281, 353, 428
SinI GGWCC 3 cut(s) 329, 404, 479
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SpeI ACTAGT 1 cut(s) 590
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 2 cut(s) 149, 591
StyD4I CCNGG 3 cut(s) 322, 397, 472
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 87, 242
TauI GCSGC 5 cut(s) 283, 355, 358, 430, 433
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 2 cut(s) 57, 152
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 1 cut(s) 377
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 628
VpaK11BI GGWCC 3 cut(s) 329, 404, 479
XceI RCATGY 1 cut(s) 526
XspI CTAG 2 cut(s) 149, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.