Rh1CG188800

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000455
Physical Location & Seq
Reverse (-)
41112919 .. 41117925
5007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG188800.1

Sequence Viewer

Length: 465 bp
ATGGCAGAACTGACGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGATGAGAAGCTCAAAGACAAGCCCAAAGAAGCCAAGGACGTGTCTAAAGAGAAACCAAAGGAAGATAAACCTAAAGACGGCGAGAAGCCGAAGGATGAGTCGAAGCCGAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCCTGGCGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACATACAGTACGATGGCTGCTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACAACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

154

Amino Acids

17.12

Weight (kDa)

7.35

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 3 cut(s) 285, 378, 415
AcyI GRCGYC 2 cut(s) 105, 277
AfaI GTAC 2 cut(s) 17, 338
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 174
AhlI ACTAGT 1 cut(s) 398
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 33, 280
AluBI AGCT 3 cut(s) 85, 145, 390
AluI AGCT 3 cut(s) 85, 145, 390
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 3 cut(s) 57, 90, 345
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 2 cut(s) 107, 455
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 44, 77, 332
BccI CCATC 2 cut(s) 335, 464
BceAI ACGGC 2 cut(s) 229, 391
BciT130I CCWGG 2 cut(s) 35, 282
BclI TGATCA 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 3 cut(s) 58, 91, 346
BlsI GCNGC 3 cut(s) 59, 92, 347
Bme1390I CCNGG 2 cut(s) 35, 282
Bme18I GGWCC 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 106, 289
BmrFI CCNGG 2 cut(s) 35, 282
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 309
BsaHI GRCGYC 2 cut(s) 105, 277
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 35, 282
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 400
BseXI GCAGC 3 cut(s) 44, 77, 332
BshFI GGCC 1 cut(s) 358
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 359
BsiWI CGTACG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 92, 273
BslI CCNNNNNNNGG 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 92, 273
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 3 cut(s) 39, 72, 123
BspACI CCGC 3 cut(s) 285, 378, 415
BspANI GGCC 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 106, 289
BspMAI CTGCAG 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 39, 72, 123
BssNI GRCGYC 2 cut(s) 105, 277
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 35, 282
Bst4CI ACNGT 2 cut(s) 314, 336
BstACI GRCGYC 2 cut(s) 105, 277
BstC8I GCNNGC 2 cut(s) 321, 451
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 455
BstKTI GATC 3 cut(s) 42, 75, 126
BstMBI GATC 3 cut(s) 39, 72, 123
BstMWI GCNNNNNNNGC 2 cut(s) 291, 414
BstNI CCWGG 2 cut(s) 35, 282
BstSCI CCNGG 2 cut(s) 33, 280
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 44, 77, 332
BsuRI GGCC 1 cut(s) 358
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 321, 451
CfoI GCGC 2 cut(s) 107, 455
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 287
CseI GACGC 1 cut(s) 266
CsiI ACCWGGT 1 cut(s) 33
Csp6I GTAC 2 cut(s) 16, 337
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 1 cut(s) 460
CviQI GTAC 2 cut(s) 16, 337
DinI GGCGCC 1 cut(s) 106
DpnI GATC 3 cut(s) 41, 74, 125
DpnII GATC 3 cut(s) 39, 72, 123
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 33, 280
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 463
FaiI YATR 8 cut(s) 88, 260, 306, 332, 351, 366, 393, 461
FaqI GGGAC 2 cut(s) 92, 273
FatI CATG 1 cut(s) 459
FauI CCCGC 1 cut(s) 422
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 58, 91, 346
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 58, 91, 346
FspBI CTAG 1 cut(s) 399
GlaI GCGC 2 cut(s) 106, 454
GluI GCNGC 3 cut(s) 58, 91, 346
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 107, 455
Hin1I GRCGYC 2 cut(s) 105, 277
Hin1II CATG 1 cut(s) 463
Hin6I GCGC 2 cut(s) 105, 453
HinP1I GCGC 2 cut(s) 105, 453
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 65, 121
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 220, 348
HpyCH4III ACNGT 2 cut(s) 314, 336
HpyCH4IV ACGT 2 cut(s) 14, 174
HpyCH4V TGCA 2 cut(s) 60, 93
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 414
HpySE526I ACGT 2 cut(s) 14, 174
Hsp92I GRCGYC 2 cut(s) 105, 277
Hsp92II CATG 1 cut(s) 463
HspAI GCGC 2 cut(s) 105, 453
KasI GGCGCC 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 3 cut(s) 39, 72, 123
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 9 cut(s) 20, 47, 61, 78, 267, 285, 294, 304, 372
Lsp1109I GCAGC 3 cut(s) 44, 77, 332
LweI GCATC 1 cut(s) 126
MabI ACCWGGT 1 cut(s) 33
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 14, 174
MaeIII GTNAC 5 cut(s) 266, 308, 371, 401, 409
MalI GATC 3 cut(s) 41, 74, 125
MboI GATC 3 cut(s) 39, 72, 123
MboII GAAGA 4 cut(s) 37, 209, 256, 446
MhlI GDGCHC 1 cut(s) 135
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 3 cut(s) 92, 266, 378
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 35, 282
MvaI CCWGG 2 cut(s) 35, 282
MwoI GCNNNNNNNGC 2 cut(s) 291, 414
NarI GGCGCC 1 cut(s) 105
NdeII GATC 3 cut(s) 39, 72, 123
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 2 cut(s) 106, 289
NmuCI GTSAC 1 cut(s) 409
Pfl23II CGTACG 1 cut(s) 15
PkrI GCNGC 3 cut(s) 59, 92, 347
PleI GAGTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 33, 280
PspGI CCWGG 2 cut(s) 33, 280
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 106, 289
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 62
RsaI GTAC 2 cut(s) 17, 338
RsaNI GTAC 2 cut(s) 16, 337
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 3 cut(s) 58, 91, 346
Sau3AI GATC 3 cut(s) 39, 72, 123
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 35, 282
SduI GDGCHC 1 cut(s) 135
SetI ASST 8 cut(s) 17, 39, 87, 103, 147, 177, 208, 392
SexAI ACCWGGT 1 cut(s) 33
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 58
SfoI GGCGCC 1 cut(s) 106
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 398
SsiI CCGC 3 cut(s) 285, 378, 415
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 33, 280
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 314, 336
TaiI ACGT 2 cut(s) 17, 177
TaqI TCGA 2 cut(s) 120, 236
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 3 cut(s) 57, 90, 345
Tsp45I GTSAC 1 cut(s) 409
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 287
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.