RLG00000028763

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000455
Physical Location & Seq
Forward (+)
27615142 .. 27616553
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028763

Sequence Viewer

Length: 582 bp
ATGGCAGATGTTGACTTGGGGGGTCTTGACATCTCATCTGATCGAGCACTCACTGCTACAACAAAGGGGGAAGAGAAGGTGACTATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTGAAATACGTGACCAGACGTACGACGAGAAGAAGAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGTCTTTAAGTGCATCGAGATCGTAAAGCCTGAACCGCCTCCGCCTCCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCGCCTCCGCCTTGCCGGCCGGTGAACCCGTGTTGTAAGGATTGTTACGGACGGCGTCCTTGTGGTCCCTGCGAAACTGGGTGTGGTTTCGGTGGGCCTGCCCCTTGCATACCATACGGTGGCTACTGTGGAAGGCAGGTCTGTGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCTCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

194

Amino Acids

20.97

Weight (kDa)

8.31

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 534
AciI CCGC 7 cut(s) 299, 305, 323, 341, 347, 495, 532
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 2 cut(s) 89, 113
AcyI GRCGYC 2 cut(s) 264, 394
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 458
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 2 cut(s) 244, 507
AluI AGCT 2 cut(s) 244, 507
Alw21I GWGCWC 1 cut(s) 49
AoxI GGCC 2 cut(s) 356, 434
ApeKI GCWGC 2 cut(s) 216, 249
ApoI RAATTY 1 cut(s) 149
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 404, 434
AsuHPI GGTGA 3 cut(s) 91, 208, 373
AvaII GGWCC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 203, 236
BccI CCATC 1 cut(s) 581
BceAI ACGGC 2 cut(s) 407, 508
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 194
BclI TGATCA 1 cut(s) 198
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 2 cut(s) 121, 217
BfuAI ACCTGC 1 cut(s) 466
BglI GCCNNNNNGGC 1 cut(s) 355
BglII AGATCT 1 cut(s) 100
BisI GCNGC 2 cut(s) 217, 250
BlsI GCNGC 2 cut(s) 218, 251
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 404, 434
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 194
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 164
BsaHI GRCGYC 2 cut(s) 264, 394
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse118I RCCGGY 2 cut(s) 354, 358
Bse1I ACTGG 1 cut(s) 421
BseBI CCWGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 9 cut(s) 300, 303, 306, 309, 318, 321, 324, 327, 517
BseX3I CGGCCG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 203, 236
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 358, 436
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 49
BsiSI CCGG 2 cut(s) 355, 359
BsiWI CGTACG 1 cut(s) 174
BslFI GGGAC 2 cut(s) 251, 390
BslI CCNNNNNNNGG 1 cut(s) 458
BsmFI GGGAC 2 cut(s) 251, 390
BsnI GGCC 2 cut(s) 358, 436
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 5 cut(s) 40, 100, 198, 231, 282
BspACI CCGC 7 cut(s) 299, 305, 323, 341, 347, 495, 532
BspANI GGCC 2 cut(s) 358, 436
BspLI GGNNCC 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 534
BsrFI RCCGGY 2 cut(s) 354, 358
BsrI ACTGG 1 cut(s) 421
BssAI RCCGGY 2 cut(s) 354, 358
BssMI GATC 5 cut(s) 40, 100, 198, 231, 282
BssNI GRCGYC 2 cut(s) 264, 394
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 458, 467
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 264, 394
BstAPI GCANNNNNTGC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 356, 438, 568
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 5 cut(s) 43, 103, 201, 234, 285
BstMBI GATC 5 cut(s) 40, 100, 198, 231, 282
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 4 cut(s) 53, 298, 355, 531
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 2 cut(s) 121, 217
BstV1I GCAGC 2 cut(s) 203, 236
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BstZI CGGCCG 1 cut(s) 356
BsuRI GGCC 2 cut(s) 358, 436
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 113, 553
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 3 cut(s) 356, 438, 568
CfoI GCGC 1 cut(s) 572
Cfr10I RCCGGY 2 cut(s) 354, 358
Cfr13I GGNCC 2 cut(s) 404, 434
CseI GACGC 2 cut(s) 253, 383
CsiI ACCWGGT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 175
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 1 cut(s) 577
CviJI RGCY 6 cut(s) 244, 292, 358, 436, 462, 507
CviKI_1 RGCY 6 cut(s) 244, 292, 358, 436, 462, 507
CviQI GTAC 1 cut(s) 175
DpnI GATC 5 cut(s) 42, 102, 200, 233, 284
DpnII GATC 5 cut(s) 40, 100, 198, 231, 282
EaeI YGGCCR 1 cut(s) 356
EagI CGGCCG 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 4 cut(s) 294, 312, 330, 336
EclXI CGGCCG 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 404
Eco52I CGGCCG 1 cut(s) 356
Eco57I CTGAAG 2 cut(s) 89, 113
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 580
FaiI YATR 6 cut(s) 86, 247, 449, 454, 510, 578
FaqI GGGAC 2 cut(s) 251, 390
FatI CATG 1 cut(s) 576
FauI CCCGC 1 cut(s) 539
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 217, 250
Fsp4HI GCNGC 2 cut(s) 217, 250
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 571
GluI GCNGC 2 cut(s) 217, 250
HaeIII GGCC 2 cut(s) 358, 436
HapII CCGG 2 cut(s) 355, 359
HgaI GACGC 2 cut(s) 253, 383
HhaI GCGC 1 cut(s) 572
Hin1I GRCGYC 2 cut(s) 264, 394
Hin1II CATG 1 cut(s) 580
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 1 cut(s) 88
HpaII CCGG 2 cut(s) 355, 359
HphI GGTGA 3 cut(s) 91, 208, 373
Hpy166II GTNNAC 2 cut(s) 13, 364
Hpy188I TCNGA 3 cut(s) 40, 93, 538
Hpy188III TCNNGA 4 cut(s) 26, 133, 224, 280
Hpy8I GTNNAC 2 cut(s) 13, 364
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 70, 88, 121, 465
HpyCH4III ACNGT 2 cut(s) 458, 467
HpyCH4IV ACGT 2 cut(s) 163, 173
HpyCH4V TGCA 4 cut(s) 219, 252, 276, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 298, 355, 531
HpySE526I ACGT 2 cut(s) 163, 173
Hsp92I GRCGYC 2 cut(s) 264, 394
Hsp92II CATG 1 cut(s) 580
HspAI GCGC 1 cut(s) 570
KroI GCCGGC 1 cut(s) 354
KroNI GCCGGC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 5 cut(s) 40, 100, 198, 231, 282
LmnI GCTCC 2 cut(s) 504, 539
Lsp1109I GCAGC 2 cut(s) 203, 236
LweI GCATC 1 cut(s) 285
MabI ACCWGGT 1 cut(s) 192
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 163, 173
MaeIII GTNAC 6 cut(s) 79, 164, 383, 488, 518, 526
MalI GATC 5 cut(s) 42, 102, 200, 233, 284
MbiI CCGCTC 1 cut(s) 534
MboI GATC 5 cut(s) 40, 100, 198, 231, 282
MboII GAAGA 5 cut(s) 83, 95, 196, 199, 563
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 1 cut(s) 149
MroNI GCCGGC 1 cut(s) 354
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 2 cut(s) 355, 359
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 4 cut(s) 53, 298, 355, 531
NaeI GCCGGC 1 cut(s) 356
NdeII GATC 5 cut(s) 40, 100, 198, 231, 282
NgoMIV GCCGGC 1 cut(s) 354
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 79, 164, 526
PdiI GCCGGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 88
Pfl23II CGTACG 1 cut(s) 174
PflFI GACNNNGTC 1 cut(s) 393
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 2 cut(s) 218, 251
Ppu21I YACGTR 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspLI CGTACG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 2 cut(s) 404, 434
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 393
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 2 cut(s) 217, 250
Sau3AI GATC 5 cut(s) 40, 100, 198, 231, 282
Sau96I GGNCC 2 cut(s) 404, 434
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 49
SexAI ACCWGGT 1 cut(s) 192
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 121, 217
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 1 cut(s) 149
SsiI CCGC 7 cut(s) 299, 305, 323, 341, 347, 495, 532
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 458, 467
TaiI ACGT 2 cut(s) 166, 176
TaqI TCGA 2 cut(s) 43, 279
TasI AATT 1 cut(s) 149
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 58, 113, 553
TseFI GTSAC 3 cut(s) 79, 164, 526
TseI GCWGC 2 cut(s) 216, 249
Tsp45I GTSAC 3 cut(s) 79, 164, 526
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 3 cut(s) 58, 113, 553
Tth111I GACNNNGTC 1 cut(s) 393
Van91I CCANNNNNTGG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 1 cut(s) 149
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.