Rmu_sc0002705.1_g000026

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002705.1
OG0000455
Physical Location & Seq
Reverse (-)
108172 .. 108865
694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002705.1_g000026.1.cds

Sequence Viewer

Length: 594 bp
atgattctgaaggtagatcttcagtgtgaaaaatgctacaggaaggtcaagaaagttctctgtaaattccctgaaatacgtgaccagacgtacgacgagaagaacaaccaggtgatcatcaaagtggtctgctgcagtcctgaaaagatcagggacaagctatgctgcaaaggaggtggcgccattaagagcatcgagatcaaagagcccgagaagcccaaagagaaaccagaggaagataaaccacccaaagaaggcgagaagccgaaggttgagtcggagtcgaagccgaagccgaagaacccgtgttgtatggattgttacggagggcgtcctggttgtccctgcgaaactcgccctccgcggcggccggtgtacccgtgttgtatggattgttacgaagggcgtcctggtggtccctgcgaaactgggtatggttacggtaggcttgctctttacatacagtacgatggctactatggaaggccggtctacgatagttacggcggtgggaggagctatactgctagttactgcgtgacccgccccgattgtttcagtgaagaaaatccccaagcgtgcgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

197

Amino Acids

22.29

Weight (kDa)

8.43

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 492
AccII CGCG 1 cut(s) 364
AciI CCGC 5 cut(s) 362, 364, 367, 507, 544
AcoI YGGCCR 1 cut(s) 368
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 5, 29
AcyI GRCGYC 3 cut(s) 180, 331, 406
AfaI GTAC 3 cut(s) 92, 377, 467
AfiI CCNNNNNNNGG 1 cut(s) 254
AjnI CCWGG 3 cut(s) 108, 334, 409
AluBI AGCT 2 cut(s) 160, 519
AluI AGCT 2 cut(s) 160, 519
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 368, 485
ApeKI GCWGC 2 cut(s) 132, 165
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 2 cut(s) 182, 584
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 119, 152
BccI CCATC 2 cut(s) 464, 593
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 3 cut(s) 110, 336, 411
BclI TGATCA 1 cut(s) 114
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 2 cut(s) 37, 133
BfoI RGCGCY 1 cut(s) 183
BglII AGATCT 1 cut(s) 16
BisI GCNGC 4 cut(s) 133, 166, 365, 368
BlsI GCNGC 4 cut(s) 134, 167, 366, 369
Bme1390I CCNGG 3 cut(s) 110, 336, 411
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 181, 418
BmrFI CCNGG 3 cut(s) 110, 336, 411
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 80
BsaHI GRCGYC 3 cut(s) 180, 331, 406
BsaJI CCNNGG 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse118I RCCGGY 2 cut(s) 370, 487
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 3 cut(s) 110, 336, 411
BseDI CCNNGG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 529
BseX3I CGGCCG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 119, 152
Bsh1236I CGCG 1 cut(s) 364
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 2 cut(s) 370, 487
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 371, 488
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 3 cut(s) 167, 327, 402
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 3 cut(s) 167, 327, 402
BsnI GGCC 2 cut(s) 370, 487
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 4 cut(s) 16, 114, 147, 198
BspACI CCGC 5 cut(s) 362, 364, 367, 507, 544
BspANI GGCC 2 cut(s) 370, 487
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 181, 418
BspMAI CTGCAG 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 2 cut(s) 370, 487
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 2 cut(s) 370, 487
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 4 cut(s) 16, 114, 147, 198
BssNI GRCGYC 3 cut(s) 180, 331, 406
Bst2UI CCWGG 3 cut(s) 110, 336, 411
Bst4CI ACNGT 2 cut(s) 443, 465
BstACI GRCGYC 3 cut(s) 180, 331, 406
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 450, 580
BstDSI CCRYGG 1 cut(s) 362
BstFNI CGCG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 182, 584
BstKTI GATC 4 cut(s) 19, 117, 150, 201
BstMBI GATC 4 cut(s) 16, 114, 147, 198
BstMCI CGRYCG 1 cut(s) 371
BstMWI GCNNNNNNNGC 3 cut(s) 214, 354, 543
BstNI CCWGG 3 cut(s) 110, 336, 411
BstSCI CCNGG 3 cut(s) 108, 334, 409
BstSFI CTRYAG 2 cut(s) 37, 133
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 119, 152
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BstZI CGGCCG 1 cut(s) 368
BsuRI GGCC 2 cut(s) 370, 487
BtgI CCRYGG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 29, 565
Cac8I GCNNGC 2 cut(s) 450, 580
CfoI GCGC 2 cut(s) 182, 584
Cfr10I RCCGGY 2 cut(s) 370, 487
Cfr13I GGNCC 1 cut(s) 416
Cfr42I CCGCGG 1 cut(s) 365
CseI GACGC 2 cut(s) 320, 395
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 3 cut(s) 91, 376, 466
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 1 cut(s) 589
CviQI GTAC 3 cut(s) 91, 376, 466
DinI GGCGCC 1 cut(s) 181
DpnI GATC 4 cut(s) 18, 116, 149, 200
DpnII GATC 4 cut(s) 16, 114, 147, 198
EaeI YGGCCR 1 cut(s) 368
EagI CGGCCG 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 416
Eco52I CGGCCG 1 cut(s) 368
Eco57I CTGAAG 2 cut(s) 5, 29
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 3 cut(s) 108, 334, 409
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
FaeI CATG 1 cut(s) 592
FaiI YATR 8 cut(s) 163, 314, 389, 435, 461, 480, 522, 590
FaqI GGGAC 3 cut(s) 167, 327, 402
FatI CATG 1 cut(s) 588
FauI CCCGC 1 cut(s) 551
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 4 cut(s) 133, 166, 365, 368
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 4 cut(s) 133, 166, 365, 368
FspBI CTAG 1 cut(s) 528
GlaI GCGC 2 cut(s) 181, 583
GluI GCNGC 4 cut(s) 133, 166, 365, 368
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 370, 487
HapII CCGG 2 cut(s) 371, 488
HgaI GACGC 2 cut(s) 320, 395
HhaI GCGC 2 cut(s) 182, 584
Hin1I GRCGYC 3 cut(s) 180, 331, 406
Hin1II CATG 1 cut(s) 592
Hin6I GCGC 2 cut(s) 180, 582
HinP1I GCGC 2 cut(s) 180, 582
HinfI GANTC 3 cut(s) 4, 275, 281
HpaII CCGG 2 cut(s) 371, 488
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 376, 493
Hpy188I TCNGA 2 cut(s) 9, 280
Hpy188III TCNNGA 3 cut(s) 49, 140, 196
Hpy8I GTNNAC 2 cut(s) 376, 493
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 6 cut(s) 4, 37, 248, 262, 395, 477
HpyCH4III ACNGT 2 cut(s) 443, 465
HpyCH4IV ACGT 2 cut(s) 79, 89
HpyCH4V TGCA 2 cut(s) 135, 168
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 354, 543
HpySE526I ACGT 2 cut(s) 79, 89
Hsp92I GRCGYC 3 cut(s) 180, 331, 406
Hsp92II CATG 1 cut(s) 592
HspAI GCGC 2 cut(s) 180, 582
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 114
KspI CCGCGG 1 cut(s) 365
Kzo9I GATC 4 cut(s) 16, 114, 147, 198
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 2 cut(s) 119, 152
LweI GCATC 1 cut(s) 201
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 1 cut(s) 528
MaeII ACGT 2 cut(s) 79, 89
MaeIII GTNAC 7 cut(s) 80, 320, 395, 437, 500, 530, 538
MalI GATC 4 cut(s) 18, 116, 149, 200
MboI GATC 4 cut(s) 16, 114, 147, 198
MboII GAAGA 5 cut(s) 11, 112, 248, 310, 575
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 2 cut(s) 284, 290
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 5 cut(s) 167, 226, 320, 369, 507
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 2 cut(s) 371, 488
MspR9I CCNGG 3 cut(s) 110, 336, 411
MvaI CCWGG 3 cut(s) 110, 336, 411
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 3 cut(s) 214, 354, 543
NarI GGCGCC 1 cut(s) 180
NdeII GATC 4 cut(s) 16, 114, 147, 198
NlaIII CATG 1 cut(s) 592
NlaIV GGNNCC 2 cut(s) 181, 418
NmuCI GTSAC 2 cut(s) 80, 538
PfeI GAWTC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 90
PkrI GCNGC 4 cut(s) 134, 167, 366, 369
PleI GAGTC 2 cut(s) 283, 289
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 2 cut(s) 283, 289
Ppu21I YACGTR 1 cut(s) 80
Psp6I CCWGG 3 cut(s) 108, 334, 409
PspGI CCWGG 3 cut(s) 108, 334, 409
PspLI CGTACG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 181, 418
PspPI GGNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 3 cut(s) 92, 377, 467
RsaNI GTAC 3 cut(s) 91, 376, 466
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 4 cut(s) 133, 166, 365, 368
Sau3AI GATC 4 cut(s) 16, 114, 147, 198
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 2 cut(s) 284, 290
ScrFI CCNGG 3 cut(s) 110, 336, 411
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 15, 48, 82, 92, 114, 162, 178, 273, 521
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 2 cut(s) 37, 133
SfoI GGCGCC 1 cut(s) 181
Sfr303I CCGCGG 1 cut(s) 365
SgrBI CCGCGG 1 cut(s) 365
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 1 cut(s) 65
SsiI CCGC 5 cut(s) 362, 364, 367, 507, 544
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 3 cut(s) 108, 334, 409
TaaI ACNGT 2 cut(s) 443, 465
TaiI ACGT 2 cut(s) 82, 92
TaqI TCGA 2 cut(s) 195, 284
TasI AATT 1 cut(s) 65
TauI GCSGC 2 cut(s) 367, 370
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 29, 565
TseFI GTSAC 2 cut(s) 80, 538
TseI GCWGC 2 cut(s) 132, 165
Tsp45I GTSAC 2 cut(s) 80, 538
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 2 cut(s) 29, 565
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.