Rh5CG005600

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000455
Physical Location & Seq
Forward (+)
376951 .. 378695
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG005600.1

Sequence Viewer

Length: 702 bp
ATGATTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGTGCCAGAGAAGCCCAAGCCAAAGGAGCCGGAGAAGCCTAAAGATCAGAAACCCAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGCAACCAAAGGAGCCGGAGAAGCCTAAAGAGAAACCCAAAGAGCCCGAGAAACCTAAAGAGAAACCCAAAGAGCCCGAGAAGCCGAAGGAAGCTCCACCTGCGGTGATGGTTAACCCGTGTTGTATGGAATGTTACGGAGGGCATCCTGGTGGTCCCTGCCAAACTGGGTACGGTTACTGTGGACCTACCCCTTACATAGAGTACGATGGCTACTATGGAAGGCCTGTCTATGATAGTTACGGCGGTGGGAGGAACTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

233

Amino Acids

26.6

Weight (kDa)

8.85

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 3 cut(s) 473, 615, 652
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 5, 29
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 92, 542, 575
AhlI ACTAGT 1 cut(s) 635
AjnI CCWGG 2 cut(s) 108, 517
AluBI AGCT 2 cut(s) 160, 464
AluI AGCT 2 cut(s) 160, 464
Alw26I GTCTC 1 cut(s) 75
Ama87I CYCGRG 2 cut(s) 416, 446
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 2 cut(s) 132, 165
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 2 cut(s) 182, 692
AspS9I GGNCC 3 cut(s) 16, 524, 554
AsuHPI GGTGA 2 cut(s) 124, 487
AvaI CYCGRG 2 cut(s) 416, 446
AvaII GGWCC 3 cut(s) 16, 524, 554
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 2 cut(s) 417, 447
BbvI GCAGC 2 cut(s) 119, 152
BccI CCATC 3 cut(s) 472, 572, 701
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 2 cut(s) 110, 519
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 2 cut(s) 37, 133
BfoI RGCGCY 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 2 cut(s) 133, 166
BlsI GCNGC 2 cut(s) 134, 167
Bme1390I CCNGG 2 cut(s) 110, 519
Bme18I GGWCC 3 cut(s) 16, 524, 554
BmeT110I CYCGRG 2 cut(s) 416, 446
BmgT120I GGNCC 3 cut(s) 16, 524, 554
BmiI GGNNCC 8 cut(s) 181, 231, 264, 294, 324, 354, 384, 526
BmrFI CCNGG 2 cut(s) 110, 519
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 2 cut(s) 201, 523
BmuI ACTGGG 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 541
BseBI CCWGG 2 cut(s) 110, 519
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 514
BseNI ACTGG 1 cut(s) 541
BseXI GCAGC 2 cut(s) 119, 152
BshFI GGCC 1 cut(s) 595
BshNI GGYRCC 1 cut(s) 179
BsiHKCI CYCGRG 2 cut(s) 416, 446
BsiSI CCGG 6 cut(s) 233, 266, 296, 326, 356, 386
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 167, 510
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 167, 510
BsnI GGCC 1 cut(s) 595
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 2 cut(s) 416, 446
Bsp1286I GDGCHC 2 cut(s) 417, 447
Bsp143I GATC 4 cut(s) 114, 147, 198, 247
BspACI CCGC 3 cut(s) 473, 615, 652
BspANI GGCC 1 cut(s) 595
BspLI GGNNCC 8 cut(s) 181, 231, 264, 294, 324, 354, 384, 526
BspMAI CTGCAG 1 cut(s) 137
BspMI ACCTGC 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 4 cut(s) 114, 147, 198, 247
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 110, 519
Bst4CI ACNGT 2 cut(s) 545, 551
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 688
BstF5I GGATG 1 cut(s) 514
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 182, 692
BstKTI GATC 4 cut(s) 117, 150, 201, 250
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 4 cut(s) 114, 147, 198, 247
BstNI CCWGG 2 cut(s) 110, 519
BstSCI CCNGG 2 cut(s) 108, 517
BstSFI CTRYAG 2 cut(s) 37, 133
BstV1I GCAGC 2 cut(s) 119, 152
BsuRI GGCC 1 cut(s) 595
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 29, 673
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 688
CfoI GCGC 2 cut(s) 182, 692
Cfr13I GGNCC 3 cut(s) 16, 524, 554
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 3 cut(s) 91, 541, 574
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 1 cut(s) 697
CviQI GTAC 3 cut(s) 91, 541, 574
DinI GGCGCC 1 cut(s) 181
DpnI GATC 4 cut(s) 116, 149, 200, 249
DpnII GATC 4 cut(s) 114, 147, 198, 247
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 595
Eco24I GRGCYC 2 cut(s) 417, 447
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 3 cut(s) 16, 524, 554
Eco57I CTGAAG 2 cut(s) 5, 29
Eco88I CYCGRG 2 cut(s) 416, 446
EcoRII CCWGG 2 cut(s) 108, 517
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 2 cut(s) 417, 447
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 700
FaiI YATR 7 cut(s) 163, 497, 569, 588, 603, 630, 698
FaqI GGGAC 2 cut(s) 167, 510
FatI CATG 1 cut(s) 696
FauI CCCGC 1 cut(s) 659
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 133, 166
FokI GGATG 1 cut(s) 501
FriOI GRGCYC 2 cut(s) 417, 447
Fsp4HI GCNGC 2 cut(s) 133, 166
FspBI CTAG 1 cut(s) 636
GlaI GCGC 2 cut(s) 181, 691
GluI GCNGC 2 cut(s) 133, 166
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 595
HapII CCGG 6 cut(s) 233, 266, 296, 326, 356, 386
HhaI GCGC 2 cut(s) 182, 692
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 1 cut(s) 700
Hin6I GCGC 2 cut(s) 180, 690
HinP1I GCGC 2 cut(s) 180, 690
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 1 cut(s) 4
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 6 cut(s) 233, 266, 296, 326, 356, 386
HphI GGTGA 2 cut(s) 124, 487
Hpy166II GTNNAC 3 cut(s) 16, 484, 554
Hpy188I TCNGA 2 cut(s) 9, 252
Hpy188III TCNNGA 3 cut(s) 49, 140, 196
Hpy8I GTNNAC 3 cut(s) 16, 484, 554
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 5 cut(s) 4, 29, 37, 451, 585
HpyCH4III ACNGT 2 cut(s) 545, 551
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 135, 168
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 700
HspAI GCGC 2 cut(s) 180, 690
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 4 cut(s) 114, 147, 198, 247
LmnI GCTCC 7 cut(s) 229, 262, 292, 322, 352, 382, 469
Lsp1109I GCAGC 2 cut(s) 119, 152
LweI GCATC 2 cut(s) 201, 523
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 1 cut(s) 636
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 5 cut(s) 503, 545, 608, 638, 646
MalI GATC 4 cut(s) 116, 149, 200, 249
MboI GATC 4 cut(s) 114, 147, 198, 247
MboII GAAGA 2 cut(s) 112, 683
MhlI GDGCHC 2 cut(s) 417, 447
MluCI AATT 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 180
MnlI CCTC 4 cut(s) 81, 167, 503, 615
MseI TTAA 2 cut(s) 186, 483
MslI CAYNNNNRTG 2 cut(s) 122, 519
MspI CCGG 6 cut(s) 233, 266, 296, 326, 356, 386
MspR9I CCNGG 2 cut(s) 110, 519
MvaI CCWGG 2 cut(s) 110, 519
NarI GGCGCC 1 cut(s) 180
NdeII GATC 4 cut(s) 114, 147, 198, 247
NlaIII CATG 1 cut(s) 700
NlaIV GGNNCC 8 cut(s) 181, 231, 264, 294, 324, 354, 384, 526
NmuCI GTSAC 1 cut(s) 646
PaqCI CACCTGC 1 cut(s) 478
PceI AGGCCT 1 cut(s) 595
PfeI GAWTC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 90
PkrI GCNGC 2 cut(s) 134, 167
PluTI GGCGCC 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 108, 517
PspGI CCWGG 2 cut(s) 108, 517
PspLI CGTACG 1 cut(s) 90
PspN4I GGNNCC 8 cut(s) 181, 231, 264, 294, 324, 354, 384, 526
PspPI GGNCC 3 cut(s) 16, 524, 554
PstI CTGCAG 1 cut(s) 137
RsaI GTAC 3 cut(s) 92, 542, 575
RsaNI GTAC 3 cut(s) 91, 541, 574
RseI CAYNNNNRTG 2 cut(s) 122, 519
SaqAI TTAA 2 cut(s) 186, 483
SatI GCNGC 2 cut(s) 133, 166
Sau3AI GATC 4 cut(s) 114, 147, 198, 247
Sau96I GGNCC 3 cut(s) 16, 524, 554
ScrFI CCNGG 2 cut(s) 110, 519
SduI GDGCHC 2 cut(s) 417, 447
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 2 cut(s) 201, 523
SfcI CTRYAG 2 cut(s) 37, 133
SfoI GGCGCC 1 cut(s) 181
SinI GGWCC 3 cut(s) 16, 524, 554
SmiMI CAYNNNNRTG 2 cut(s) 122, 519
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 1 cut(s) 65
SseBI AGGCCT 1 cut(s) 595
SsiI CCGC 3 cut(s) 473, 615, 652
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 636
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 2 cut(s) 108, 517
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 545, 551
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 186, 483
Tru9I TTAA 2 cut(s) 186, 483
TscAI CASTG 2 cut(s) 29, 673
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 2 cut(s) 132, 165
Tsp45I GTSAC 1 cut(s) 646
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 29, 673
VpaK11BI GGWCC 3 cut(s) 16, 524, 554
XapI RAATTY 1 cut(s) 65
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.