Rw1G017060

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000455
Physical Location & Seq
Reverse (-)
37857000 .. 37858301
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017060.1

Sequence Viewer

Length: 540 bp
ATGGGAGAAAAGAAGGTGACTATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTGAAATACGTGACCAGACATACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAAGAGAAACCAAAGGAAGATAAACCACCCAAAGAAGGCGAGAAGACGAAGGTTGAGTCGGAGTCGAAGCCGAAGCCCAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGCCATGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTGCTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

179

Amino Acids

20.24

Weight (kDa)

8.74

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 200, 351
AciI CCGC 2 cut(s) 453, 490
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 26, 50
AcyI GRCGYC 2 cut(s) 201, 352
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 275
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 181, 465
AluI AGCT 2 cut(s) 181, 465
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 153, 186
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspLEI GCGC 3 cut(s) 203, 354, 530
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 28, 145
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 362
BanI GGYRCC 2 cut(s) 200, 351
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 140, 173
BccI CCATC 2 cut(s) 410, 539
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 1 cut(s) 135
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 2 cut(s) 58, 154
BfoI RGCGCY 2 cut(s) 204, 355
BglII AGATCT 1 cut(s) 37
BisI GCNGC 2 cut(s) 154, 187
BlsI GCNGC 2 cut(s) 155, 188
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 362
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 3 cut(s) 202, 353, 364
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 101
BsaHI GRCGYC 2 cut(s) 201, 352
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 475
BseXI GCAGC 2 cut(s) 140, 173
BshFI GGCC 1 cut(s) 433
BshNI GGYRCC 2 cut(s) 200, 351
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 188, 348
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 188, 348
BsnI GGCC 1 cut(s) 433
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 4 cut(s) 37, 135, 168, 219
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 2 cut(s) 453, 490
BspANI GGCC 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 202, 353, 364
BspMAI CTGCAG 1 cut(s) 158
BspT107I GGYRCC 2 cut(s) 200, 351
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 4 cut(s) 37, 135, 168, 219
BssNI GRCGYC 2 cut(s) 201, 352
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 389, 411
BstACI GRCGYC 2 cut(s) 201, 352
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 396, 526
BstDSI CCRYGG 1 cut(s) 355
BstH2I RGCGCY 2 cut(s) 204, 355
BstHHI GCGC 3 cut(s) 203, 354, 530
BstKTI GATC 4 cut(s) 40, 138, 171, 222
BstMBI GATC 4 cut(s) 37, 135, 168, 219
BstMWI GCNNNNNNNGC 2 cut(s) 235, 489
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 58, 154
BstV1I GCAGC 2 cut(s) 140, 173
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 50, 511
Cac8I GCNNGC 2 cut(s) 396, 526
CfoI GCGC 3 cut(s) 203, 354, 530
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 362
CsiI ACCWGGT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 412
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 2 cut(s) 356, 535
CviJI RGCY 9 cut(s) 181, 229, 238, 310, 316, 394, 420, 433, 465
CviKI_1 RGCY 9 cut(s) 181, 229, 238, 310, 316, 394, 420, 433, 465
CviQI GTAC 1 cut(s) 412
DinI GGCGCC 2 cut(s) 202, 353
DpnI GATC 4 cut(s) 39, 137, 170, 221
DpnII GATC 4 cut(s) 37, 135, 168, 219
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 2 cut(s) 26, 50
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 231
EgeI GGCGCC 2 cut(s) 202, 353
EheI GGCGCC 2 cut(s) 202, 353
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 2 cut(s) 359, 538
FaqI GGGAC 2 cut(s) 188, 348
FatI CATG 2 cut(s) 355, 534
FauI CCCGC 1 cut(s) 497
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 154, 187
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 154, 187
FspBI CTAG 1 cut(s) 474
GlaI GCGC 3 cut(s) 202, 353, 529
GluI GCNGC 2 cut(s) 154, 187
HaeII RGCGCY 2 cut(s) 204, 355
HaeIII GGCC 1 cut(s) 433
HapII CCGG 1 cut(s) 434
HhaI GCGC 3 cut(s) 203, 354, 530
Hin1I GRCGYC 2 cut(s) 201, 352
Hin1II CATG 2 cut(s) 359, 538
Hin6I GCGC 3 cut(s) 201, 352, 528
HinP1I GCGC 3 cut(s) 201, 352, 528
HinfI GANTC 3 cut(s) 25, 296, 302
HpaII CCGG 1 cut(s) 434
HphI GGTGA 2 cut(s) 28, 145
Hpy188I TCNGA 2 cut(s) 30, 301
Hpy188III TCNNGA 3 cut(s) 70, 161, 217
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 6 cut(s) 7, 25, 58, 269, 283, 423
HpyCH4III ACNGT 2 cut(s) 389, 411
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 156, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 489
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 2 cut(s) 201, 352
Hsp92II CATG 2 cut(s) 359, 538
HspAI GCGC 3 cut(s) 201, 352, 528
KasI GGCGCC 2 cut(s) 200, 351
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 4 cut(s) 37, 135, 168, 219
LmnI GCTCC 1 cut(s) 462
Lsp1109I GCAGC 2 cut(s) 140, 173
LweI GCATC 1 cut(s) 222
MabI ACCWGGT 1 cut(s) 129
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 7 cut(s) 16, 101, 341, 383, 446, 476, 484
MalI GATC 4 cut(s) 39, 137, 170, 221
MboI GATC 4 cut(s) 37, 135, 168, 219
MboII GAAGA 5 cut(s) 32, 133, 269, 295, 521
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 86
Mly113I GGCGCC 2 cut(s) 201, 352
MlyI GAGTC 2 cut(s) 305, 311
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 3 cut(s) 188, 341, 453
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 235, 489
NarI GGCGCC 2 cut(s) 201, 352
NcoI CCATGG 1 cut(s) 355
NdeII GATC 4 cut(s) 37, 135, 168, 219
NlaIII CATG 2 cut(s) 359, 538
NlaIV GGNNCC 3 cut(s) 202, 353, 364
NmuCI GTSAC 3 cut(s) 16, 101, 484
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 155, 188
PleI GAGTC 2 cut(s) 304, 310
PluTI GGCGCC 2 cut(s) 204, 355
PpsI GAGTC 2 cut(s) 304, 310
Ppu21I YACGTR 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 202, 353, 364
PspPI GGNCC 1 cut(s) 362
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 154, 187
Sau3AI GATC 4 cut(s) 37, 135, 168, 219
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 2 cut(s) 305, 311
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 231
SetI ASST 9 cut(s) 18, 36, 69, 103, 135, 183, 199, 294, 467
SexAI ACCWGGT 1 cut(s) 129
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 2 cut(s) 58, 154
SfoI GGCGCC 2 cut(s) 202, 353
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 1 cut(s) 86
SsiI CCGC 2 cut(s) 453, 490
SspDI GGCGCC 2 cut(s) 200, 351
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 389, 411
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 216, 305
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 50, 511
TseFI GTSAC 3 cut(s) 16, 101, 484
TseI GCWGC 2 cut(s) 153, 186
Tsp45I GTSAC 3 cut(s) 16, 101, 484
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 50, 511
VpaK11BI GGWCC 1 cut(s) 362
XapI RAATTY 1 cut(s) 86
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.