MD08G1234400.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000455
Physical Location & Seq
Reverse (-)
30142137 .. 30144045
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1234400.v1.1.491

Sequence Viewer

Length: 873 bp
ATGGGGGAAAAGGAAAAGGTTACGATTATGGTGCTGAAGGTAGATCTTCAGTGTCACAAATGCTACAAGAAGGTTAAAAAAGTTCTTTGTAAATTCCCTCAAATACGAGACCAGGTATACAACGAGAAACAAAACCAAGTGGTGATCAAAGTGGTATGCTGCAGTCCAGAAAAGATAAGGGACAAGATTTGCTGCAAAGGTGGGAGTGCCATCAAGAGCATCGAGATCATGAAAGAGCCCGACGTCAAGCCTAAAGGTGACGGTAAGGGTGACGGTAAGGGTGACGGTAAGCCTAAAGATGATGGCAAGCCTAAAGATGACGGCAATCCTAAAGATGACGGCAAGCCTAAAGATGACAGCAAGCCTAAAGATGACGGTAAGCCAAATCCTGGACCACCATCGCCTCAGCCAGTTCCTTGTGTGCCGGCGCACCGACCGCCTGTCCGAACGTGTTGTATGGAATGTTACCAGGGGCATGCAGGTGGGCCATGCCATAATCCTGGACCGCCACCACCTCAGCCGGTTCCTTGTGTGCCAGCGCACCGACCGCCTGTCCGAGCATGTTGTATGGATTGTTACCAGGGGCATGCAGGTGGGCCGTGCCATAATCCTGGACCGCCACCGCCTCAGCCGGTTCCTTGTGTGCCAGGGTATCGACCGCCTGTCCGAGCGTGTTGTATGGATTGTTACCAAGGGCGTGCAGGTGGGCCGTGCCATAGTGGTTATGGCGGGGGCCCAGCCCCGTACGTCCAGTATGATGGTTACTATGGAAGGCCTGTGTATGACAGTTACGGCGGGGGCAGCATGGGGTACTGTGTTACCCGCCCTGACTATTTCAGTGAAGAAAATACCTCAGCTTGCAGAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

291

Amino Acids

31.26

Weight (kDa)

8.69

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 470, 581, 692
AatII GACGTC 1 cut(s) 246
Acc36I ACCTGC 3 cut(s) 470, 581, 692
AccB7I CCANNNNNTGG 1 cut(s) 389
AccI GTMKAC 1 cut(s) 117
AciI CCGC 9 cut(s) 437, 506, 548, 617, 623, 659, 729, 795, 823
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 2 cut(s) 746, 812
AfiI CCNNNNNNNGG 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 449
AhdI GACNNNNNGTC 3 cut(s) 440, 551, 662
AjnI CCWGG 7 cut(s) 111, 388, 468, 499, 579, 610, 646
AluBI AGCT 1 cut(s) 857
AluI AGCT 1 cut(s) 857
Alw26I GTCTC 1 cut(s) 102
AoxI GGCC 5 cut(s) 485, 596, 707, 733, 773
ApaI GGGCCC 1 cut(s) 737
ApeKI GCWGC 3 cut(s) 159, 192, 801
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 430, 541
AspS9I GGNCC 8 cut(s) 392, 485, 503, 596, 614, 707, 733, 734
AsuHPI GGTGA 4 cut(s) 154, 269, 281, 293
AvaII GGWCC 3 cut(s) 392, 503, 614
BaeGI GKGCMC 1 cut(s) 737
BanII GRGCYC 2 cut(s) 240, 737
BbvCI CCTCAGC 4 cut(s) 405, 516, 627, 853
BbvI GCAGC 3 cut(s) 146, 179, 813
BccI CCATC 4 cut(s) 218, 296, 406, 752
BceAI ACGGC 5 cut(s) 337, 355, 583, 694, 808
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 160
BfuAI ACCTGC 3 cut(s) 470, 581, 692
BglII AGATCT 1 cut(s) 43
BisI GCNGC 3 cut(s) 160, 193, 802
BlsI GCNGC 3 cut(s) 161, 194, 803
Bme1390I CCNGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
Bme18I GGWCC 3 cut(s) 392, 503, 614
BmeRI GACNNNNNGTC 3 cut(s) 440, 551, 662
BmgT120I GGNCC 8 cut(s) 392, 485, 503, 596, 614, 707, 733, 734
BmiI GGNNCC 4 cut(s) 525, 636, 734, 735
BmrFI CCNGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
BmsI GCATC 1 cut(s) 228
Bpu10I CCTNAGC 4 cut(s) 405, 516, 627, 853
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 469, 580, 647, 691
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse118I RCCGGY 3 cut(s) 424, 520, 631
Bse1I ACTGG 2 cut(s) 410, 751
BseBI CCWGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
BseDI CCNNGG 4 cut(s) 469, 580, 647, 691
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 4 cut(s) 419, 530, 641, 867
BseNI ACTGG 2 cut(s) 410, 751
BseSI GKGCMC 1 cut(s) 737
BseXI GCAGC 3 cut(s) 146, 179, 813
BseYI CCCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 720
Bsh1285I CGRYCG 3 cut(s) 437, 548, 659
BshFI GGCC 5 cut(s) 487, 598, 709, 735, 775
BsiEI CGRYCG 3 cut(s) 437, 548, 659
BsiSI CCGG 3 cut(s) 425, 521, 632
BsiWI CGTACG 1 cut(s) 744
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 5 cut(s) 487, 598, 709, 735, 775
Bso31I GGTCTC 1 cut(s) 102
Bsp120I GGGCCC 1 cut(s) 733
Bsp1286I GDGCHC 2 cut(s) 240, 737
Bsp143I GATC 3 cut(s) 43, 144, 225
BspACI CCGC 9 cut(s) 437, 506, 548, 617, 623, 659, 729, 795, 823
BspANI GGCC 5 cut(s) 487, 598, 709, 735, 775
BspCNI CTCAG 4 cut(s) 418, 529, 640, 866
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 525, 636, 734, 735
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 3 cut(s) 470, 581, 692
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 3 cut(s) 424, 520, 631
BsrI ACTGG 2 cut(s) 410, 751
BssAI RCCGGY 3 cut(s) 424, 520, 631
BssECI CCNNGG 4 cut(s) 469, 580, 647, 691
BssMI GATC 3 cut(s) 43, 144, 225
BssNAI GTATAC 1 cut(s) 118
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 691
Bst1107I GTATAC 1 cut(s) 118
Bst2UI CCWGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
Bst4CI ACNGT 6 cut(s) 263, 275, 287, 377, 788, 815
BstACI GRCGYC 1 cut(s) 243
BstC8I GCNNGC 9 cut(s) 308, 344, 362, 426, 477, 537, 588, 699, 859
BstDEI CTNAG 4 cut(s) 405, 516, 627, 853
BstHHI GCGC 2 cut(s) 430, 541
BstKTI GATC 3 cut(s) 46, 147, 228
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 43, 144, 225
BstMCI CGRYCG 3 cut(s) 437, 548, 659
BstMWI GCNNNNNNNGC 3 cut(s) 436, 547, 801
BstNI CCWGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
BstNSI RCATGY 3 cut(s) 479, 564, 590
BstSCI CCNGG 7 cut(s) 111, 388, 468, 499, 579, 610, 646
BstSFI CTRYAG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 737
BstV1I GCAGC 3 cut(s) 146, 179, 813
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 3 cut(s) 500, 611, 758
BstYI RGATCY 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 118
BsuRI GGCC 5 cut(s) 487, 598, 709, 735, 775
BtgZI GCGATG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 56, 844
BveI ACCTGC 3 cut(s) 470, 581, 692
Cac8I GCNNGC 9 cut(s) 308, 344, 362, 426, 477, 537, 588, 699, 859
CciI TCATGA 1 cut(s) 228
CfoI GCGC 2 cut(s) 430, 541
Cfr10I RCCGGY 3 cut(s) 424, 520, 631
Cfr13I GGNCC 8 cut(s) 392, 485, 503, 596, 614, 707, 733, 734
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 2 cut(s) 745, 811
CviAII CATG 7 cut(s) 229, 476, 489, 561, 587, 805, 868
CviQI GTAC 2 cut(s) 745, 811
DdeI CTNAG 4 cut(s) 405, 516, 627, 853
DpnI GATC 3 cut(s) 45, 146, 227
DpnII GATC 3 cut(s) 43, 144, 225
DriI GACNNNNNGTC 3 cut(s) 440, 551, 662
Eam1105I GACNNNNNGTC 3 cut(s) 440, 551, 662
Eco130I CCWWGG 1 cut(s) 691
Eco147I AGGCCT 1 cut(s) 775
Eco24I GRGCYC 2 cut(s) 240, 737
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 392, 503, 614
Eco57I CTGAAG 2 cut(s) 32, 56
EcoO109I RGGNCCY 1 cut(s) 733
EcoRII CCWGG 7 cut(s) 111, 388, 468, 499, 579, 610, 646
EcoT14I CCWWGG 1 cut(s) 691
EcoT38I GRGCYC 2 cut(s) 240, 737
ErhI CCWWGG 1 cut(s) 691
FaeI CATG 7 cut(s) 232, 479, 492, 564, 590, 808, 871
FaqI GGGAC 1 cut(s) 194
FatI CATG 7 cut(s) 228, 475, 488, 560, 586, 804, 867
FauI CCCGC 3 cut(s) 722, 788, 830
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 160, 193, 802
FriOI GRGCYC 2 cut(s) 240, 737
Fsp4HI GCNGC 3 cut(s) 160, 193, 802
GlaI GCGC 2 cut(s) 429, 540
GluI GCNGC 3 cut(s) 160, 193, 802
GsaI CCCAGC 1 cut(s) 740
HaeIII GGCC 5 cut(s) 487, 598, 709, 735, 775
HapII CCGG 3 cut(s) 425, 521, 632
HhaI GCGC 2 cut(s) 430, 541
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 7 cut(s) 232, 479, 492, 564, 590, 808, 871
Hin6I GCGC 2 cut(s) 428, 539
HinP1I GCGC 2 cut(s) 428, 539
HinfI GANTC 1 cut(s) 864
HpaII CCGG 3 cut(s) 425, 521, 632
HphI GGTGA 4 cut(s) 154, 269, 281, 293
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 446, 557, 668
Hpy188III TCNNGA 4 cut(s) 167, 214, 223, 229
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 3 cut(s) 31, 64, 765
HpyCH4III ACNGT 6 cut(s) 263, 275, 287, 377, 788, 815
HpyCH4IV ACGT 3 cut(s) 243, 449, 747
HpyCH4V TGCA 6 cut(s) 162, 195, 479, 590, 701, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 547, 801
HpyF3I CTNAG 4 cut(s) 405, 516, 627, 853
HpySE526I ACGT 3 cut(s) 243, 449, 747
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 7 cut(s) 232, 479, 492, 564, 590, 808, 871
HspAI GCGC 2 cut(s) 428, 539
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 3 cut(s) 43, 144, 225
Lsp1109I GCAGC 3 cut(s) 146, 179, 813
LweI GCATC 1 cut(s) 228
MabI ACCWGGT 1 cut(s) 111
MaeII ACGT 3 cut(s) 243, 449, 747
MalI GATC 3 cut(s) 45, 146, 227
MboI GATC 3 cut(s) 43, 144, 225
MboII GAAGA 2 cut(s) 38, 854
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 240, 737
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 873
MnlI CCTC 5 cut(s) 108, 414, 525, 636, 862
MroNI GCCGGC 1 cut(s) 424
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 480, 591
MspI CCGG 3 cut(s) 425, 521, 632
MspR9I CCNGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
MvaI CCWGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
MwoI GCNNNNNNNGC 3 cut(s) 436, 547, 801
NaeI GCCGGC 1 cut(s) 426
NdeII GATC 3 cut(s) 43, 144, 225
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 7 cut(s) 232, 479, 492, 564, 590, 808, 871
NlaIV GGNNCC 4 cut(s) 525, 636, 734, 735
NmuCI GTSAC 4 cut(s) 53, 257, 269, 281
NspI RCATGY 3 cut(s) 479, 564, 590
PaeI GCATGC 2 cut(s) 479, 590
PagI TCATGA 1 cut(s) 228
PaqCI CACCTGC 3 cut(s) 470, 581, 692
PceI AGGCCT 1 cut(s) 775
PdiI GCCGGC 1 cut(s) 426
Pfl23II CGTACG 1 cut(s) 744
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 3 cut(s) 388, 499, 610
PkrI GCNGC 3 cut(s) 161, 194, 803
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
Psp6I CCWGG 7 cut(s) 111, 388, 468, 499, 579, 610, 646
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 7 cut(s) 111, 388, 468, 499, 579, 610, 646
PspLI CGTACG 1 cut(s) 744
PspN4I GGNNCC 4 cut(s) 525, 636, 734, 735
PspOMI GGGCCC 1 cut(s) 733
PspPI GGNCC 8 cut(s) 392, 485, 503, 596, 614, 707, 733, 734
PstI CTGCAG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 2 cut(s) 746, 812
RsaNI GTAC 2 cut(s) 745, 811
RseI CAYNNNNRTG 2 cut(s) 480, 591
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 160, 193, 802
Sau3AI GATC 3 cut(s) 43, 144, 225
Sau96I GGNCC 8 cut(s) 392, 485, 503, 596, 614, 707, 733, 734
SchI GAGTC 1 cut(s) 873
ScrFI CCNGG 7 cut(s) 113, 390, 470, 501, 581, 612, 648
SduI GDGCHC 2 cut(s) 240, 737
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 3 cut(s) 392, 503, 614
SmiMI CAYNNNNRTG 2 cut(s) 480, 591
SphI GCATGC 2 cut(s) 479, 590
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 775
SsiI CCGC 9 cut(s) 437, 506, 548, 617, 623, 659, 729, 795, 823
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 7 cut(s) 111, 388, 468, 499, 579, 610, 646
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 6 cut(s) 263, 275, 287, 377, 788, 815
TaiI ACGT 3 cut(s) 246, 452, 750
TaqI TCGA 2 cut(s) 222, 655
TasI AATT 1 cut(s) 92
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 56, 844
TseFI GTSAC 4 cut(s) 53, 257, 269, 281
TseI GCWGC 3 cut(s) 159, 192, 801
Tsp45I GTSAC 4 cut(s) 53, 257, 269, 281
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 56, 844
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 3 cut(s) 392, 503, 614
XapI RAATTY 1 cut(s) 92
XceI RCATGY 3 cut(s) 479, 564, 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 117
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.