pycom10g28770

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
29276467 .. 29277672
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28770.2

Sequence Viewer

Length: 855 bp
ATGGGGGAAAAGGAAAAGGTTACGACTATGGTGCTGAAGGTGGATCTTCAGTGTCACAAATGCTACAAGAAGGTCAAAAAAGTTCTTTGTAAATTCCCTCAAATACGAGACCAAATATACGACGAGAAGCAAAACCACGTGGAGATCAAAGTGGTATGCTGCAATCCAGAAGAGATTAGGGACAAGATTTGCTGCAAAGGTGGGAATGCCATCAAATGCATCAAGATCAAAGAGCCCAAAGGGGCCGAGCCCGGGAAGCCCAACAAGAACGAGCACAAAGATGACAAGCACAAATGTGACTGTAAGCGTAAATGTGACGACAAACCTAAATGTGACGGCAAGCCTAAATGTGACTGTAAGCCTAAATGTGACTGTAAGTGTGACTGTAAGCCTAAATGTGACGACAAACCTAAATGTGACGATAAGCCTCCAGATCATGTTGTGCCAGTGTGCCCACCGCCTAAAGATCATGTTGTGCCAGTGTGCCCACCGTCTGTCCGAGCGTGTTGTATGGATTGTTGCCAGGGGCATGCAGGTGGGTCATGCTGCTGTGGTTATGGCTGCAAGAAAAAAAATGACTGCAAGCCTAAAGATCCTGCTGTGCTAGGGAACCCAATGCATGTCCGCGCATGTTGTATGGATTGTGGTTGTGGCAAGCGGCCGTGCAATAGTGGTTGTGGCGAGCGGCCGTGCAATAGTGGTTGTGGCGAGCGGCCGTGCTACAATGGCTGTGGCGGGGGACCAGTCACGTGCATCGTTTGTGTTGGTTACTATGGGAGGCCTGTGTATGACAGTTGTGGCGGTGGCAGCTGGGGGTATTGTGAAGAAAATCCCTCAGCTTGCACAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

285

Amino Acids

31.02

Weight (kDa)

8.56

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 524
AccBSI CCGCTC 2 cut(s) 685, 712
AccII CGCG 1 cut(s) 627
AciI CCGC 7 cut(s) 458, 625, 658, 685, 712, 735, 801
AclWI GGATC 2 cut(s) 51, 587
AcoI YGGCCR 3 cut(s) 659, 686, 713
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcvI CACGTG 2 cut(s) 139, 750
AfiI CCNNNNNNNGG 1 cut(s) 252
AjnI CCWGG 1 cut(s) 522
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 2 cut(s) 810, 839
AluI AGCT 2 cut(s) 810, 839
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 51, 587
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 5 cut(s) 243, 659, 686, 713, 779
ApeKI GCWGC 5 cut(s) 159, 192, 546, 561, 807
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 2 cut(s) 243, 740
AsuC2I CCSGG 2 cut(s) 252, 253
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 740
BaeGI GKGCMC 2 cut(s) 455, 488
BanII GRGCYC 2 cut(s) 237, 252
BbrPI CACGTG 2 cut(s) 139, 750
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 835
BbvI GCAGC 5 cut(s) 146, 179, 533, 548, 819
BccI CCATC 1 cut(s) 218
BceAI ACGGC 4 cut(s) 352, 646, 673, 700
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 524
BcnI CCSGG 2 cut(s) 252, 253
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 605
BfuAI ACCTGC 1 cut(s) 524
BisI GCNGC 8 cut(s) 160, 193, 547, 562, 659, 686, 713, 808
BlsI GCNGC 8 cut(s) 161, 194, 548, 563, 660, 687, 714, 809
Bme1390I CCNGG 3 cut(s) 252, 253, 524
Bme18I GGWCC 1 cut(s) 740
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 243, 740
BmiI GGNNCC 3 cut(s) 244, 611, 741
BmrFI CCNGG 3 cut(s) 252, 253, 524
BmsI GCATC 2 cut(s) 228, 762
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 835
BpuMI CCSGG 2 cut(s) 252, 253
BsaAI YACGTR 2 cut(s) 139, 750
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 251, 523
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 3 cut(s) 446, 479, 743
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 251, 523
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 3 cut(s) 446, 479, 743
BseSI GKGCMC 2 cut(s) 455, 488
BseX3I CGGCCG 3 cut(s) 659, 686, 713
BseXI GCAGC 5 cut(s) 146, 179, 533, 548, 819
BseYI CCCAGC 1 cut(s) 810
Bsh1236I CGCG 1 cut(s) 627
Bsh1285I CGRYCG 3 cut(s) 662, 689, 716
BshFI GGCC 5 cut(s) 245, 661, 688, 715, 781
BsiEI CGRYCG 3 cut(s) 662, 689, 716
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 2 cut(s) 194, 753
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 194, 753
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 5 cut(s) 245, 661, 688, 715, 781
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 5 cut(s) 237, 252, 276, 455, 488
Bsp143I GATC 6 cut(s) 43, 144, 225, 433, 466, 592
BspACI CCGC 7 cut(s) 458, 625, 658, 685, 712, 735, 801
BspANI GGCC 5 cut(s) 245, 661, 688, 715, 781
BspCNI CTCAG 1 cut(s) 848
BspFNI CGCG 1 cut(s) 627
BspLI GGNNCC 3 cut(s) 244, 611, 741
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 2 cut(s) 51, 587
BspTNI GGTCTC 1 cut(s) 102
BsrBI CCGCTC 2 cut(s) 685, 712
BsrI ACTGG 3 cut(s) 446, 479, 743
BssECI CCNNGG 2 cut(s) 251, 523
BssMI GATC 6 cut(s) 43, 144, 225, 433, 466, 592
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 7 cut(s) 302, 356, 374, 386, 492, 794, 847
Bst6I CTCTTC 1 cut(s) 165
BstBAI YACGTR 2 cut(s) 139, 750
BstC8I GCNNGC 7 cut(s) 341, 531, 584, 656, 683, 710, 841
BstDEI CTNAG 1 cut(s) 835
BstFNI CGCG 1 cut(s) 627
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 6 cut(s) 46, 147, 228, 436, 469, 595
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 6 cut(s) 43, 144, 225, 433, 466, 592
BstMCI CGRYCG 3 cut(s) 662, 689, 716
BstMWI GCNNNNNNNGC 3 cut(s) 256, 726, 807
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 3 cut(s) 533, 623, 633
BstSCI CCNGG 3 cut(s) 250, 251, 522
BstSLI GKGCMC 2 cut(s) 455, 488
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 5 cut(s) 146, 179, 533, 548, 819
BstX2I RGATCY 2 cut(s) 43, 592
BstYI RGATCY 2 cut(s) 43, 592
BstZI CGGCCG 3 cut(s) 659, 686, 713
BsuRI GGCC 5 cut(s) 245, 661, 688, 715, 781
BtsIMutI CAGTG 3 cut(s) 56, 453, 486
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 7 cut(s) 341, 531, 584, 656, 683, 710, 841
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 2 cut(s) 243, 740
Cfr9I CCCGGG 1 cut(s) 251
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 7 cut(s) 437, 470, 530, 543, 620, 630, 850
DdeI CTNAG 1 cut(s) 835
DpnI GATC 6 cut(s) 45, 146, 227, 435, 468, 594
DpnII GATC 6 cut(s) 43, 144, 225, 433, 466, 592
EaeI YGGCCR 3 cut(s) 659, 686, 713
EagI CGGCCG 3 cut(s) 659, 686, 713
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EclXI CGGCCG 3 cut(s) 659, 686, 713
Eco147I AGGCCT 1 cut(s) 781
Eco24I GRGCYC 2 cut(s) 237, 252
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 740
Eco52I CGGCCG 3 cut(s) 659, 686, 713
Eco57I CTGAAG 2 cut(s) 32, 56
Eco72I CACGTG 2 cut(s) 139, 750
Eco88I CYCGRG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 522
EcoT22I ATGCAT 2 cut(s) 221, 621
EcoT38I GRGCYC 2 cut(s) 237, 252
FaeI CATG 7 cut(s) 440, 473, 533, 546, 623, 633, 853
FaqI GGGAC 2 cut(s) 194, 753
FatI CATG 7 cut(s) 436, 469, 529, 542, 619, 629, 849
FauI CCCGC 1 cut(s) 728
Fnu4HI GCNGC 8 cut(s) 160, 193, 547, 562, 659, 686, 713, 808
FriOI GRGCYC 2 cut(s) 237, 252
Fsp4HI GCNGC 8 cut(s) 160, 193, 547, 562, 659, 686, 713, 808
FspBI CTAG 1 cut(s) 605
GlaI GCGC 1 cut(s) 628
GluI GCNGC 8 cut(s) 160, 193, 547, 562, 659, 686, 713, 808
GsaI CCCAGC 1 cut(s) 814
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 5 cut(s) 245, 661, 688, 715, 781
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 629
Hin1II CATG 7 cut(s) 440, 473, 533, 546, 623, 633, 853
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HpaII CCGG 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 3 cut(s) 167, 223, 431
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 31, 64
HpyCH4III ACNGT 7 cut(s) 302, 356, 374, 386, 492, 794, 847
HpyCH4IV ACGT 2 cut(s) 138, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 726, 807
HpyF3I CTNAG 1 cut(s) 835
HpySE526I ACGT 2 cut(s) 138, 749
Hsp92II CATG 7 cut(s) 440, 473, 533, 546, 623, 633, 853
HspAI GCGC 1 cut(s) 627
Kzo9I GATC 6 cut(s) 43, 144, 225, 433, 466, 592
Lsp1109I GCAGC 5 cut(s) 146, 179, 533, 548, 819
LweI GCATC 2 cut(s) 228, 762
MaeI CTAG 1 cut(s) 605
MaeII ACGT 2 cut(s) 138, 749
MalI GATC 6 cut(s) 45, 146, 227, 435, 468, 594
MbiI CCGCTC 2 cut(s) 685, 712
MboI GATC 6 cut(s) 43, 144, 225, 433, 466, 592
MboII GAAGA 3 cut(s) 38, 182, 836
MflI RGATCY 2 cut(s) 43, 592
MhlI GDGCHC 5 cut(s) 237, 252, 276, 455, 488
MluCI AATT 1 cut(s) 92
MnlI CCTC 4 cut(s) 108, 438, 771, 844
Mph1103I ATGCAT 2 cut(s) 221, 621
MslI CAYNNNNRTG 4 cut(s) 279, 294, 534, 848
MspA1I CMGCKG 1 cut(s) 810
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 3 cut(s) 252, 253, 524
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 256, 726, 807
NciI CCSGG 2 cut(s) 252, 253
NdeII GATC 6 cut(s) 43, 144, 225, 433, 466, 592
NlaIII CATG 7 cut(s) 440, 473, 533, 546, 623, 633, 853
NlaIV GGNNCC 3 cut(s) 244, 611, 741
NmeAIII GCCGAG 1 cut(s) 271
NsiI ATGCAT 2 cut(s) 221, 621
NspI RCATGY 3 cut(s) 533, 623, 633
OliI CACNNNNGTG 1 cut(s) 294
PaeI GCATGC 1 cut(s) 533
PaqCI CACCTGC 1 cut(s) 524
PceI AGGCCT 1 cut(s) 781
PctI GAATGC 1 cut(s) 211
PkrI GCNGC 8 cut(s) 161, 194, 548, 563, 660, 687, 714, 809
PmaCI CACGTG 2 cut(s) 139, 750
PmlI CACGTG 2 cut(s) 139, 750
Ppu21I YACGTR 2 cut(s) 139, 750
Psp6I CCWGG 1 cut(s) 522
PspCI CACGTG 2 cut(s) 139, 750
PspFI CCCAGC 1 cut(s) 810
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 3 cut(s) 244, 611, 741
PspPI GGNCC 2 cut(s) 243, 740
PsuI RGATCY 2 cut(s) 43, 592
PvuII CAGCTG 1 cut(s) 810
RseI CAYNNNNRTG 4 cut(s) 279, 294, 534, 848
SatI GCNGC 8 cut(s) 160, 193, 547, 562, 659, 686, 713, 808
Sau3AI GATC 6 cut(s) 43, 144, 225, 433, 466, 592
Sau96I GGNCC 2 cut(s) 243, 740
ScrFI CCNGG 3 cut(s) 252, 253, 524
SduI GDGCHC 5 cut(s) 237, 252, 276, 455, 488
SfaNI GCATC 2 cut(s) 228, 762
SinI GGWCC 1 cut(s) 740
SmaI CCCGGG 1 cut(s) 253
SmiMI CAYNNNNRTG 4 cut(s) 279, 294, 534, 848
SphI GCATGC 1 cut(s) 533
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 7 cut(s) 458, 625, 658, 685, 712, 735, 801
SspMI CTAG 1 cut(s) 605
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 3 cut(s) 250, 251, 522
TaaI ACNGT 7 cut(s) 302, 356, 374, 386, 492, 794, 847
TaiI ACGT 2 cut(s) 141, 752
TasI AATT 1 cut(s) 92
TauI GCSGC 3 cut(s) 661, 688, 715
TscAI CASTG 3 cut(s) 56, 453, 486
TseI GCWGC 5 cut(s) 159, 192, 546, 561, 807
TspMI CCCGGG 1 cut(s) 251
TspRI CASTG 3 cut(s) 56, 453, 486
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 1 cut(s) 92
XceI RCATGY 3 cut(s) 533, 623, 633
XmaI CCCGGG 1 cut(s) 251
XspI CTAG 1 cut(s) 605
Zsp2I ATGCAT 2 cut(s) 221, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.