Rmu_sc0002705.1_g000035

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002705.1
OG0000455
Physical Location & Seq
Reverse (-)
147497 .. 148677
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002705.1_g000035.1.cds

Sequence Viewer

Length: 738 bp
atggtcgttccgcccccgtattcaatcatttcgcccagactctgtccaaaacatcagatctcatctgatcgagctctcactgcaacaacaatgggggaaaagaaggtgactataatgattctgaaggtagaccttcagtgtgaaaaatgctacaggaaggtcaagaaagttctctgtaaattccctcaaatacgagaccagacgtacgacgagaagaacaacctggtgatcatcaaagtggtctgctgcagtcctgaaaagatcagggacaagctatgctgcaaaggaggggacgccattaagaacatcgatatcaaagagcgcgagaagctccagcctcctccggatgacaaatccaaaaaggacaaggacgtgtctaaagagaaacaaaaggaagacaaatccaaacacgacgagaagctgaaggatgagccgaagcggaagaacccgtgttgtatggattgttacggagggcgtcctggtggtccctgcgaaactcgccctccgcggtggccggtgaacccgtgttgtatggattgttacgaagggcgtcctggtggtccctgcgaaactgggtatggttacggtgggcctgccccttacatacagtacgatggctactatggaaggccggtctatgatagttacggcggtgggaggagctataccactagttactgcgtgacccgccccgattgtttcagtgaagaaaatccccaagcgtgcgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

245

Amino Acids

27.72

Weight (kDa)

8.74

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 324, 508
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 6 cut(s) 11, 439, 506, 508, 651, 688
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 3 cut(s) 119, 143, 443
AcyI GRCGYC 3 cut(s) 294, 475, 550
AfaI GTAC 2 cut(s) 206, 611
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 1 cut(s) 24
AhlI ACTAGT 1 cut(s) 671
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 3 cut(s) 222, 478, 553
AluBI AGCT 5 cut(s) 74, 274, 331, 421, 663
AluI AGCT 5 cut(s) 74, 274, 331, 421, 663
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 42
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 3 cut(s) 512, 590, 629
ApeKI GCWGC 2 cut(s) 246, 279
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 2 cut(s) 324, 728
AspS9I GGNCC 3 cut(s) 485, 560, 590
AsuHPI GGTGA 3 cut(s) 118, 238, 529
AvaII GGWCC 2 cut(s) 485, 560
BanII GRGCYC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 233, 266
BccI CCATC 2 cut(s) 608, 737
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 3 cut(s) 224, 480, 555
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 671
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 2 cut(s) 151, 247
BglII AGATCT 1 cut(s) 57
BisI GCNGC 2 cut(s) 247, 280
BlsI GCNGC 2 cut(s) 248, 281
Bme1390I CCNGG 3 cut(s) 224, 480, 555
Bme18I GGWCC 2 cut(s) 485, 560
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 3 cut(s) 485, 560, 590
BmiI GGNNCC 2 cut(s) 487, 562
BmrFI CCNGG 3 cut(s) 224, 480, 555
BmrI ACTGGG 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 309
BsaHI GRCGYC 3 cut(s) 294, 475, 550
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 506
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse118I RCCGGY 2 cut(s) 514, 631
Bse1I ACTGG 1 cut(s) 577
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 3 cut(s) 224, 480, 555
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 2 cut(s) 352, 433
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 2 cut(s) 330, 673
BseXI GCAGC 2 cut(s) 233, 266
Bsh1236I CGCG 2 cut(s) 324, 508
BshFI GGCC 3 cut(s) 514, 592, 631
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 3 cut(s) 344, 515, 632
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 4 cut(s) 281, 305, 471, 546
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 4 cut(s) 281, 305, 471, 546
BsnI GGCC 3 cut(s) 514, 592, 631
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 76
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 4 cut(s) 57, 67, 228, 261
BspACI CCGC 6 cut(s) 11, 439, 506, 508, 651, 688
BspANI GGCC 3 cut(s) 514, 592, 631
BspDI ATCGAT 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 343
BspFNI CGCG 2 cut(s) 324, 508
BspLI GGNNCC 2 cut(s) 487, 562
BspMAI CTGCAG 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 514, 631
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 2 cut(s) 514, 631
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 4 cut(s) 57, 67, 228, 261
BssNI GRCGYC 3 cut(s) 294, 475, 550
Bst2UI CCWGG 3 cut(s) 224, 480, 555
Bst4CI ACNGT 2 cut(s) 587, 609
BstACI GRCGYC 3 cut(s) 294, 475, 550
BstC8I GCNNGC 2 cut(s) 594, 724
BstDSI CCRYGG 1 cut(s) 506
BstF5I GGATG 2 cut(s) 352, 433
BstFNI CGCG 2 cut(s) 324, 508
BstHHI GCGC 2 cut(s) 324, 728
BstKTI GATC 4 cut(s) 60, 70, 231, 264
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 57, 67, 228, 261
BstMWI GCNNNNNNNGC 4 cut(s) 80, 328, 498, 687
BstNI CCWGG 3 cut(s) 224, 480, 555
BstSCI CCNGG 3 cut(s) 222, 478, 553
BstSFI CTRYAG 2 cut(s) 151, 247
BstUI CGCG 2 cut(s) 324, 508
BstV1I GCAGC 2 cut(s) 233, 266
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 3 cut(s) 514, 592, 631
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 506
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 2 cut(s) 352, 433
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 143, 709
Cac8I GCNNGC 2 cut(s) 594, 724
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 2 cut(s) 324, 728
Cfr10I RCCGGY 2 cut(s) 514, 631
Cfr13I GGNCC 3 cut(s) 485, 560, 590
Cfr42I CCGCGG 1 cut(s) 509
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 3 cut(s) 302, 464, 539
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 2 cut(s) 205, 610
CviAII CATG 1 cut(s) 733
CviQI GTAC 2 cut(s) 205, 610
DpnI GATC 4 cut(s) 59, 69, 230, 263
DpnII GATC 4 cut(s) 57, 67, 228, 261
EaeI YGGCCR 1 cut(s) 512
Ecl136II GAGCTC 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 189
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 485, 560
Eco53kI GAGCTC 1 cut(s) 74
Eco57I CTGAAG 3 cut(s) 119, 143, 443
EcoICRI GAGCTC 1 cut(s) 74
EcoRII CCWGG 3 cut(s) 222, 478, 553
EcoRV GATATC 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 1 cut(s) 736
FaqI GGGAC 4 cut(s) 281, 305, 471, 546
FatI CATG 1 cut(s) 732
FauI CCCGC 1 cut(s) 695
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 247, 280
FokI GGATG 2 cut(s) 359, 440
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 247, 280
FspBI CTAG 1 cut(s) 672
GlaI GCGC 2 cut(s) 323, 727
GluI GCNGC 2 cut(s) 247, 280
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 3 cut(s) 514, 592, 631
HapII CCGG 3 cut(s) 344, 515, 632
HgaI GACGC 3 cut(s) 302, 464, 539
HhaI GCGC 2 cut(s) 324, 728
Hin1I GRCGYC 3 cut(s) 294, 475, 550
Hin1II CATG 1 cut(s) 736
Hin6I GCGC 2 cut(s) 322, 726
HinP1I GCGC 2 cut(s) 322, 726
HinfI GANTC 2 cut(s) 39, 118
HpaII CCGG 3 cut(s) 344, 515, 632
HphI GGTGA 3 cut(s) 118, 238, 529
Hpy166II GTNNAC 2 cut(s) 130, 520
Hpy188I TCNGA 3 cut(s) 57, 67, 123
Hpy188III TCNNGA 3 cut(s) 163, 254, 344
Hpy8I GTNNAC 2 cut(s) 130, 520
Hpy99I CGWCG 2 cut(s) 212, 416
HpyAV CCTTC 7 cut(s) 97, 118, 143, 151, 418, 539, 621
HpyCH4III ACNGT 2 cut(s) 587, 609
HpyCH4IV ACGT 2 cut(s) 203, 372
HpyCH4V TGCA 3 cut(s) 83, 249, 282
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 328, 498, 687
HpySE526I ACGT 2 cut(s) 203, 372
Hsp92I GRCGYC 3 cut(s) 294, 475, 550
Hsp92II CATG 1 cut(s) 736
HspAI GCGC 2 cut(s) 322, 726
Kpn2I TCCGGA 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 228
KspI CCGCGG 1 cut(s) 509
Kzo9I GATC 4 cut(s) 57, 67, 228, 261
LmnI GCTCC 2 cut(s) 336, 660
Lsp1109I GCAGC 2 cut(s) 233, 266
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 1 cut(s) 672
MaeII ACGT 2 cut(s) 203, 372
MaeIII GTNAC 7 cut(s) 106, 464, 539, 581, 644, 674, 682
MalI GATC 4 cut(s) 59, 69, 230, 263
MboI GATC 4 cut(s) 57, 67, 228, 261
MboII GAAGA 4 cut(s) 226, 407, 454, 719
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 7 cut(s) 195, 281, 348, 351, 464, 513, 651
MroI TCCGGA 1 cut(s) 343
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 3 cut(s) 344, 515, 632
MspR9I CCNGG 3 cut(s) 224, 480, 555
MvaI CCWGG 3 cut(s) 224, 480, 555
MvnI CGCG 2 cut(s) 324, 508
MwoI GCNNNNNNNGC 4 cut(s) 80, 328, 498, 687
NdeII GATC 4 cut(s) 57, 67, 228, 261
NlaIII CATG 1 cut(s) 736
NlaIV GGNNCC 2 cut(s) 487, 562
NmuCI GTSAC 2 cut(s) 106, 682
PfeI GAWTC 1 cut(s) 118
Pfl23II CGTACG 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 248, 281
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 76
Psp6I CCWGG 3 cut(s) 222, 478, 553
PspGI CCWGG 3 cut(s) 222, 478, 553
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 487, 562
PspPI GGNCC 3 cut(s) 485, 560, 590
PstI CTGCAG 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 42
RsaI GTAC 2 cut(s) 206, 611
RsaNI GTAC 2 cut(s) 205, 610
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 76
SacII CCGCGG 1 cut(s) 509
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 247, 280
Sau3AI GATC 4 cut(s) 57, 67, 228, 261
Sau96I GGNCC 3 cut(s) 485, 560, 590
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 3 cut(s) 224, 480, 555
SduI GDGCHC 1 cut(s) 76
SexAI ACCWGGT 1 cut(s) 222
SfcI CTRYAG 2 cut(s) 151, 247
Sfr303I CCGCGG 1 cut(s) 509
SgrBI CCGCGG 1 cut(s) 509
SinI GGWCC 2 cut(s) 485, 560
SmiMI CAYNNNNRTG 1 cut(s) 236
SpeI ACTAGT 1 cut(s) 671
Sse9I AATT 1 cut(s) 179
SsiI CCGC 6 cut(s) 11, 439, 506, 508, 651, 688
SspMI CTAG 1 cut(s) 672
SstI GAGCTC 1 cut(s) 76
StyD4I CCNGG 3 cut(s) 222, 478, 553
TaaI ACNGT 2 cut(s) 587, 609
TaiI ACGT 2 cut(s) 206, 375
TaqI TCGA 2 cut(s) 70, 309
TasI AATT 1 cut(s) 179
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 3 cut(s) 85, 143, 709
TseFI GTSAC 2 cut(s) 106, 682
TseI GCWGC 2 cut(s) 246, 279
Tsp45I GTSAC 2 cut(s) 106, 682
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 3 cut(s) 85, 143, 709
Tth111I GACNNNGTC 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 485, 560
XapI RAATTY 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.