Rh1AG203500

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000455
Physical Location & Seq
Reverse (-)
38613840 .. 38617890
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG203500.1

Sequence Viewer

Length: 531 bp
ATGAGTGAATGGGATAAGCTTACAATGCCAATACAAGATATATCCGAGAACCTATACGAAAGAGAAATACGTGACCAGACGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGATGAGAAGCTCAAAGACAAGCCCAAAGAAGCCAAGGACGTGTCTAAAGAGAAACCAAAGGAAGATAAACCTAAAGACGGCGAGAAGCCGAAGGATGAGTCGAAGCCGAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCCTGGCGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACATACAGTACGATGGCTGCTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACAACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

176

Amino Acids

19.9

Weight (kDa)

5.47

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 3 cut(s) 351, 444, 481
AcyI GRCGYC 2 cut(s) 171, 343
AfaI GTAC 2 cut(s) 83, 404
AfiI CCNNNNNNNGG 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 240
AhlI ACTAGT 1 cut(s) 464
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 99, 346
AluBI AGCT 4 cut(s) 19, 151, 211, 456
AluI AGCT 4 cut(s) 19, 151, 211, 456
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 3 cut(s) 123, 156, 411
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspLEI GCGC 2 cut(s) 173, 521
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 110, 143, 398
BccI CCATC 2 cut(s) 401, 530
BceAI ACGGC 2 cut(s) 295, 457
BciT130I CCWGG 2 cut(s) 101, 348
BclI TGATCA 1 cut(s) 105
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 3 cut(s) 124, 157, 412
BlsI GCNGC 3 cut(s) 125, 158, 413
Bme1390I CCNGG 2 cut(s) 101, 348
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 172, 355
BmrFI CCNGG 2 cut(s) 101, 348
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 71
BsaHI GRCGYC 2 cut(s) 171, 343
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 2 cut(s) 101, 348
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 466
BseXI GCAGC 3 cut(s) 110, 143, 398
BshFI GGCC 1 cut(s) 424
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 425
BsiWI CGTACG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 158, 339
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 158, 339
BsnI GGCC 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 105, 138, 189
BspACI CCGC 3 cut(s) 351, 444, 481
BspANI GGCC 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 172, 355
BspMAI CTGCAG 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 3 cut(s) 105, 138, 189
BssNI GRCGYC 2 cut(s) 171, 343
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 101, 348
Bst4CI ACNGT 2 cut(s) 380, 402
BstACI GRCGYC 2 cut(s) 171, 343
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 387, 517
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 173, 521
BstKTI GATC 3 cut(s) 108, 141, 192
BstMBI GATC 3 cut(s) 105, 138, 189
BstMWI GCNNNNNNNGC 3 cut(s) 25, 357, 480
BstNI CCWGG 2 cut(s) 101, 348
BstSCI CCNGG 2 cut(s) 99, 346
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 110, 143, 398
BsuRI GGCC 1 cut(s) 424
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 387, 517
CfoI GCGC 2 cut(s) 173, 521
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 353
CseI GACGC 1 cut(s) 332
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 2 cut(s) 82, 403
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 1 cut(s) 526
CviQI GTAC 2 cut(s) 82, 403
DinI GGCGCC 1 cut(s) 172
DpnI GATC 3 cut(s) 107, 140, 191
DpnII GATC 3 cut(s) 105, 138, 189
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 99, 346
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 201
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 529
FaqI GGGAC 2 cut(s) 158, 339
FatI CATG 1 cut(s) 525
FauI CCCGC 1 cut(s) 488
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 124, 157, 412
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 124, 157, 412
FspBI CTAG 1 cut(s) 465
GlaI GCGC 2 cut(s) 172, 520
GluI GCNGC 3 cut(s) 124, 157, 412
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 1 cut(s) 424
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 332
HhaI GCGC 2 cut(s) 173, 521
Hin1I GRCGYC 2 cut(s) 171, 343
Hin1II CATG 1 cut(s) 529
Hin6I GCGC 2 cut(s) 171, 519
HinP1I GCGC 2 cut(s) 171, 519
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 425
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 131, 187
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 286, 414
HpyCH4III ACNGT 2 cut(s) 380, 402
HpyCH4IV ACGT 3 cut(s) 70, 80, 240
HpyCH4V TGCA 2 cut(s) 126, 159
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 357, 480
HpySE526I ACGT 3 cut(s) 70, 80, 240
Hsp92I GRCGYC 2 cut(s) 171, 343
Hsp92II CATG 1 cut(s) 529
HspAI GCGC 2 cut(s) 171, 519
KasI GGCGCC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 3 cut(s) 105, 138, 189
LmnI GCTCC 1 cut(s) 453
Lsp1109I GCAGC 3 cut(s) 110, 143, 398
LweI GCATC 1 cut(s) 192
MabI ACCWGGT 1 cut(s) 99
MaeI CTAG 1 cut(s) 465
MaeII ACGT 3 cut(s) 70, 80, 240
MaeIII GTNAC 6 cut(s) 71, 332, 374, 437, 467, 475
MalI GATC 3 cut(s) 107, 140, 191
MboI GATC 3 cut(s) 105, 138, 189
MboII GAAGA 4 cut(s) 103, 275, 322, 512
MhlI GDGCHC 1 cut(s) 201
Mly113I GGCGCC 1 cut(s) 171
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 3 cut(s) 158, 332, 444
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 101, 348
MvaI CCWGG 2 cut(s) 101, 348
MwoI GCNNNNNNNGC 3 cut(s) 25, 357, 480
NarI GGCGCC 1 cut(s) 171
NdeII GATC 3 cut(s) 105, 138, 189
NlaIII CATG 1 cut(s) 529
NlaIV GGNNCC 2 cut(s) 172, 355
NmuCI GTSAC 2 cut(s) 71, 475
Pfl23II CGTACG 1 cut(s) 81
PkrI GCNGC 3 cut(s) 125, 158, 413
PleI GAGTC 1 cut(s) 307
PluTI GGCGCC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 99, 346
PspGI CCWGG 2 cut(s) 99, 346
PspLI CGTACG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 172, 355
PspPI GGNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 128
RsaI GTAC 2 cut(s) 83, 404
RsaNI GTAC 2 cut(s) 82, 403
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 3 cut(s) 124, 157, 412
Sau3AI GATC 3 cut(s) 105, 138, 189
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 101, 348
SduI GDGCHC 1 cut(s) 201
SexAI ACCWGGT 1 cut(s) 99
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 124
SfoI GGCGCC 1 cut(s) 172
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 464
SsiI CCGC 3 cut(s) 351, 444, 481
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 99, 346
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 380, 402
TaiI ACGT 3 cut(s) 73, 83, 243
TaqI TCGA 2 cut(s) 186, 302
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 2 cut(s) 71, 475
TseI GCWGC 3 cut(s) 123, 156, 411
Tsp45I GTSAC 2 cut(s) 71, 475
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 353
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.