Rh1DG199800

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000455
Physical Location & Seq
Reverse (-)
39223670 .. 39226146
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG199800.1

Sequence Viewer

Length: 348 bp
ATGGATTGTTATGGAGGGGGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTGGGCCTGCCCCTTACATGCAGTACGATGGCTACTATGGAAGGCCGGTGTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATTTACTTGTCACATGATTCTGAATTTCATATTTTCTTATGTGAAAAAGTATCTCCATATACCAGACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

115

Amino Acids

12.78

Weight (kDa)

5.25

Isoelectric Point (pI)

65.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 52
AciI CCGC 5 cut(s) 50, 52, 55, 195, 232
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 94
AfaI GTAC 1 cut(s) 155
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 2 cut(s) 22, 97
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 345
AoxI GGCC 3 cut(s) 56, 134, 173
ApoI RAATTY 1 cut(s) 299
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 4 cut(s) 20, 29, 104, 134
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 3 cut(s) 20, 29, 104
BccI CCATC 2 cut(s) 152, 281
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 2 cut(s) 24, 99
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 53, 56
BlsI GCNGC 2 cut(s) 54, 57
Bme1390I CCNGG 2 cut(s) 24, 99
Bme18I GGWCC 3 cut(s) 20, 29, 104
BmgT120I GGNCC 4 cut(s) 20, 29, 104, 134
BmiI GGNNCC 3 cut(s) 21, 31, 106
BmrFI CCNGG 2 cut(s) 24, 99
BmrI ACTGGG 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse118I RCCGGY 2 cut(s) 58, 175
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 2 cut(s) 24, 99
BseDI CCNNGG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 217
BseX3I CGGCCG 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 3 cut(s) 58, 136, 175
BsiEI CGRYCG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 59, 176
BslFI GGGAC 2 cut(s) 15, 90
BsmFI GGGAC 2 cut(s) 15, 90
BsnI GGCC 3 cut(s) 58, 136, 175
BspACI CCGC 5 cut(s) 50, 52, 55, 195, 232
BspANI GGCC 3 cut(s) 58, 136, 175
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 3 cut(s) 21, 31, 106
BsrFI RCCGGY 2 cut(s) 58, 175
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 2 cut(s) 58, 175
BssECI CCNNGG 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 24, 99
Bst4CI ACNGT 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 138, 268
BstDSI CCRYGG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 52
BstHHI GCGC 1 cut(s) 272
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 42, 231
BstNI CCWGG 2 cut(s) 24, 99
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 22, 97
BstUI CGCG 1 cut(s) 52
BstZI CGGCCG 1 cut(s) 56
BsuRI GGCC 3 cut(s) 58, 136, 175
BtgI CCRYGG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 138, 268
CaiI CAGNNNCTG 1 cut(s) 345
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 2 cut(s) 58, 175
Cfr13I GGNCC 4 cut(s) 20, 29, 104, 134
Cfr42I CCGCGG 1 cut(s) 53
CseI GACGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 148, 290
CviJI RGCY 5 cut(s) 58, 136, 162, 175, 207
CviKI_1 RGCY 5 cut(s) 58, 136, 162, 175, 207
CviQI GTAC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 56
EagI CGGCCG 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 56
Eco47I GGWCC 3 cut(s) 20, 29, 104
Eco52I CGGCCG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 22, 97
FaeI CATG 2 cut(s) 151, 293
FaqI GGGAC 2 cut(s) 15, 90
FatI CATG 2 cut(s) 147, 289
FauI CCCGC 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 53, 56
Fsp4HI GCNGC 2 cut(s) 53, 56
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 271
GluI GCNGC 2 cut(s) 53, 56
HaeIII GGCC 3 cut(s) 58, 136, 175
HapII CCGG 2 cut(s) 59, 176
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 2 cut(s) 151, 293
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HinfI GANTC 1 cut(s) 293
HpaII CCGG 2 cut(s) 59, 176
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 83, 165
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 231
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 2 cut(s) 151, 293
HspAI GCGC 1 cut(s) 270
KspI CCGCGG 1 cut(s) 53
LmnI GCTCC 1 cut(s) 204
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 6 cut(s) 83, 125, 188, 218, 226, 285
MboII GAAGA 1 cut(s) 263
MluCI AATT 1 cut(s) 299
MnlI CCTC 3 cut(s) 8, 57, 195
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 2 cut(s) 59, 176
MspR9I CCNGG 2 cut(s) 24, 99
MvaI CCWGG 2 cut(s) 24, 99
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 42, 231
NlaIII CATG 2 cut(s) 151, 293
NlaIV GGNNCC 3 cut(s) 21, 31, 106
NmuCI GTSAC 2 cut(s) 226, 285
NspI RCATGY 1 cut(s) 151
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 54, 57
PpuMI RGGWCCY 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 22, 97
PspGI CCWGG 2 cut(s) 22, 97
PspN4I GGNNCC 3 cut(s) 21, 31, 106
PspPI GGNCC 4 cut(s) 20, 29, 104, 134
PspPPI RGGWCCY 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 345
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacII CCGCGG 1 cut(s) 53
SatI GCNGC 2 cut(s) 53, 56
Sau96I GGNCC 4 cut(s) 20, 29, 104, 134
ScrFI CCNGG 2 cut(s) 24, 99
SetI ASST 1 cut(s) 209
Sfr303I CCGCGG 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 53
SinI GGWCC 3 cut(s) 20, 29, 104
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 1 cut(s) 299
SsiI CCGC 5 cut(s) 50, 52, 55, 195, 232
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 22, 97
TaaI ACNGT 1 cut(s) 131
TasI AATT 1 cut(s) 299
TauI GCSGC 2 cut(s) 55, 58
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 2 cut(s) 226, 285
Tsp45I GTSAC 2 cut(s) 226, 285
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 3 cut(s) 20, 29, 104
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 151
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.