Rroxscaffold_3G00273490

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000455
Physical Location & Seq
Forward (+)
65243634 .. 65245140
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273490.1

Sequence Viewer

Length: 822 bp
ATGGGAGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTCCTCTGTAAATTCCCTCAAATACGAGACCAGATGTACGACGAGAAGAACAACCAGGTGATTATCAAAGTGGTCTGCTGCTGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTACGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCGGCTCCGAAACCTGCTCCGGTTCCGAAACCGAAACCTGCTCCCGCTCCGGCTCCGAAACCTGCTCCCACTCCTGCTCCGAAACCTGCTCCGGCTCCTGCTCCGAAACCATCTCCGGCGCCGGTACCTGCTTGCCCTCCGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTATGGTGCTCCGGCTCCGGCGCCAGTTCCTGCTTGCCGTCCGCGGCCGTTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTTTGGTGCTCCGGCTCCGGCGCCAGTTCCTGCTTGCCGTCCGCGGCCGTTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTACGGTTACAGTGGGCCTGCCCCTTACACACAGTACGATGGCTACTACGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGATACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGTATGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

273

Amino Acids

29.21

Weight (kDa)

8.89

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 5 cut(s) 271, 295, 319, 343, 385
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 5 cut(s) 203, 367, 373, 475, 583
AccBSI CCGCTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 39
AccII CGCG 3 cut(s) 391, 499, 607
AciI CCGC 9 cut(s) 294, 389, 391, 497, 499, 605, 607, 747, 772
AcoI YGGCCR 3 cut(s) 392, 500, 608
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 7 cut(s) 204, 368, 430, 476, 538, 584, 646
AfaI GTAC 4 cut(s) 116, 375, 674, 707
AgsI TTSAA 2 cut(s) 508, 616
AjnI CCWGG 2 cut(s) 132, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 2 cut(s) 466, 574
Alw26I GTCTC 1 cut(s) 99
AlwNI CAGNNNCTG 2 cut(s) 485, 593
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 5 cut(s) 392, 500, 608, 686, 725
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
Asp718I GGTACC 1 cut(s) 373
AspLEI GCGC 5 cut(s) 206, 370, 478, 586, 812
AspS9I GGNCC 4 cut(s) 440, 548, 656, 686
AsuHPI GGTGA 3 cut(s) 28, 148, 409
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 3 cut(s) 440, 548, 656
BanI GGYRCC 5 cut(s) 203, 367, 373, 475, 583
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 466, 574
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 3 cut(s) 367, 704, 821
BceAI ACGGC 5 cut(s) 477, 487, 585, 595, 760
BciT130I CCWGG 2 cut(s) 134, 651
BcoDI GTCTC 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 4 cut(s) 207, 371, 479, 587
BfuAI ACCTGC 5 cut(s) 271, 295, 319, 343, 385
BisI GCNGC 5 cut(s) 157, 190, 392, 500, 608
BlsI GCNGC 5 cut(s) 158, 191, 393, 501, 609
Bme1390I CCNGG 2 cut(s) 134, 651
Bme18I GGWCC 3 cut(s) 440, 548, 656
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 4 cut(s) 440, 548, 656, 686
BmrFI CCNGG 2 cut(s) 134, 651
BmrI ACTGGG 3 cut(s) 462, 570, 678
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 3 cut(s) 462, 570, 678
BsaHI GRCGYC 7 cut(s) 204, 368, 430, 476, 538, 584, 646
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 389, 497, 605
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bse118I RCCGGY 3 cut(s) 370, 394, 727
Bse1I ACTGG 5 cut(s) 457, 479, 565, 587, 673
BseBI CCWGG 2 cut(s) 134, 651
BseDI CCNNGG 3 cut(s) 389, 497, 605
BseNI ACTGG 5 cut(s) 457, 479, 565, 587, 673
BseRI GAGGAG 1 cut(s) 769
BseX3I CGGCCG 3 cut(s) 392, 500, 608
BseXI GCAGC 2 cut(s) 143, 176
Bsh1236I CGCG 3 cut(s) 391, 499, 607
Bsh1285I CGRYCG 3 cut(s) 395, 503, 611
BshFI GGCC 5 cut(s) 394, 502, 610, 688, 727
BshNI GGYRCC 5 cut(s) 203, 367, 373, 475, 583
BsiEI CGRYCG 3 cut(s) 395, 503, 611
BsiHKAI GWGCWC 2 cut(s) 466, 574
BsiHKCI CYCGRG 1 cut(s) 233
BslFI GGGAC 4 cut(s) 191, 426, 534, 642
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 4 cut(s) 191, 426, 534, 642
BsnI GGCC 5 cut(s) 394, 502, 610, 688, 727
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 3 cut(s) 234, 466, 574
Bsp143I GATC 2 cut(s) 171, 222
BspACI CCGC 9 cut(s) 294, 389, 391, 497, 499, 605, 607, 747, 772
BspANI GGCC 5 cut(s) 394, 502, 610, 688, 727
BspFNI CGCG 3 cut(s) 391, 499, 607
BspMI ACCTGC 5 cut(s) 271, 295, 319, 343, 385
BspT107I GGYRCC 5 cut(s) 203, 367, 373, 475, 583
BspTNI GGTCTC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 296
BsrFI RCCGGY 3 cut(s) 370, 394, 727
BsrI ACTGG 5 cut(s) 457, 479, 565, 587, 673
BssAI RCCGGY 3 cut(s) 370, 394, 727
BssECI CCNNGG 3 cut(s) 389, 497, 605
BssMI GATC 2 cut(s) 171, 222
BssNI GRCGYC 7 cut(s) 204, 368, 430, 476, 538, 584, 646
Bst2UI CCWGG 2 cut(s) 134, 651
Bst4CI ACNGT 3 cut(s) 677, 683, 705
BstACI GRCGYC 7 cut(s) 204, 368, 430, 476, 538, 584, 646
BstC8I GCNNGC 4 cut(s) 382, 490, 598, 690
BstDSI CCRYGG 3 cut(s) 389, 497, 605
BstFNI CGCG 3 cut(s) 391, 499, 607
BstH2I RGCGCY 4 cut(s) 207, 371, 479, 587
BstHHI GCGC 5 cut(s) 206, 370, 478, 586, 812
BstKTI GATC 2 cut(s) 174, 225
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 171, 222
BstMCI CGRYCG 3 cut(s) 395, 503, 611
BstMWI GCNNNNNNNGC 2 cut(s) 238, 771
BstNI CCWGG 2 cut(s) 134, 651
BstSCI CCNGG 2 cut(s) 132, 649
BstSFI CTRYAG 1 cut(s) 61
BstUI CGCG 3 cut(s) 391, 499, 607
BstV1I GCAGC 2 cut(s) 143, 176
BstZI CGGCCG 3 cut(s) 392, 500, 608
BsuRI GGCC 5 cut(s) 394, 502, 610, 688, 727
BtgI CCRYGG 3 cut(s) 389, 497, 605
BtsIMutI CAGTG 3 cut(s) 53, 688, 793
BveI ACCTGC 5 cut(s) 271, 295, 319, 343, 385
Cac8I GCNNGC 4 cut(s) 382, 490, 598, 690
CaiI CAGNNNCTG 2 cut(s) 485, 593
CfoI GCGC 5 cut(s) 206, 370, 478, 586, 812
Cfr10I RCCGGY 3 cut(s) 370, 394, 727
Cfr13I GGNCC 4 cut(s) 440, 548, 656, 686
Cfr42I CCGCGG 3 cut(s) 392, 500, 608
CseI GACGC 3 cut(s) 419, 527, 635
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 4 cut(s) 115, 374, 673, 706
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 3 cut(s) 434, 542, 817
CviQI GTAC 4 cut(s) 115, 374, 673, 706
DinI GGCGCC 4 cut(s) 205, 369, 477, 585
DpnI GATC 2 cut(s) 173, 224
DpnII GATC 2 cut(s) 171, 222
EaeI YGGCCR 3 cut(s) 392, 500, 608
EagI CGGCCG 3 cut(s) 392, 500, 608
EclXI CGGCCG 3 cut(s) 392, 500, 608
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 440, 548, 656
Eco52I CGGCCG 3 cut(s) 392, 500, 608
Eco57I CTGAAG 2 cut(s) 29, 53
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 132, 649
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 4 cut(s) 205, 369, 477, 585
EheI GGCGCC 4 cut(s) 205, 369, 477, 585
FaeI CATG 3 cut(s) 437, 545, 820
FaqI GGGAC 4 cut(s) 191, 426, 534, 642
FatI CATG 3 cut(s) 433, 541, 816
FauI CCCGC 2 cut(s) 301, 779
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 5 cut(s) 157, 190, 392, 500, 608
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 5 cut(s) 157, 190, 392, 500, 608
GlaI GCGC 5 cut(s) 205, 369, 477, 585, 811
GluI GCNGC 5 cut(s) 157, 190, 392, 500, 608
HaeII RGCGCY 4 cut(s) 207, 371, 479, 587
HaeIII GGCC 5 cut(s) 394, 502, 610, 688, 727
HgaI GACGC 3 cut(s) 419, 527, 635
HhaI GCGC 5 cut(s) 206, 370, 478, 586, 812
Hin1I GRCGYC 7 cut(s) 204, 368, 430, 476, 538, 584, 646
Hin1II CATG 3 cut(s) 437, 545, 820
Hin6I GCGC 5 cut(s) 204, 368, 476, 584, 810
HinP1I GCGC 5 cut(s) 204, 368, 476, 584, 810
HinfI GANTC 1 cut(s) 28
HphI GGTGA 3 cut(s) 28, 148, 409
Hpy166II GTNNAC 2 cut(s) 40, 400
Hpy188I TCNGA 6 cut(s) 33, 258, 276, 306, 330, 354
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy8I GTNNAC 2 cut(s) 40, 400
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 6 cut(s) 7, 28, 53, 61, 635, 717
HpyCH4III ACNGT 3 cut(s) 677, 683, 705
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 771
Hsp92I GRCGYC 7 cut(s) 204, 368, 430, 476, 538, 584, 646
Hsp92II CATG 3 cut(s) 437, 545, 820
HspAI GCGC 5 cut(s) 204, 368, 476, 584, 810
KasI GGCGCC 4 cut(s) 203, 367, 475, 583
KpnI GGTACC 1 cut(s) 377
KspI CCGCGG 3 cut(s) 392, 500, 608
Kzo9I GATC 2 cut(s) 171, 222
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeIII GTNAC 7 cut(s) 16, 419, 527, 635, 677, 740, 766
MalI GATC 2 cut(s) 173, 224
MbiI CCGCTC 1 cut(s) 296
MboI GATC 2 cut(s) 171, 222
MboII GAAGA 2 cut(s) 136, 803
MhlI GDGCHC 3 cut(s) 234, 466, 574
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 4 cut(s) 204, 368, 476, 584
MnlI CCTC 8 cut(s) 92, 105, 191, 258, 396, 419, 527, 747
MspA1I CMGCKG 3 cut(s) 391, 499, 607
MspR9I CCNGG 2 cut(s) 134, 651
MvaI CCWGG 2 cut(s) 134, 651
MvnI CGCG 3 cut(s) 391, 499, 607
MwoI GCNNNNNNNGC 2 cut(s) 238, 771
NarI GGCGCC 4 cut(s) 204, 368, 476, 584
NdeII GATC 2 cut(s) 171, 222
NlaIII CATG 3 cut(s) 437, 545, 820
NmuCI GTSAC 2 cut(s) 16, 766
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 5 cut(s) 158, 191, 393, 501, 609
PluTI GGCGCC 4 cut(s) 207, 371, 479, 587
Psp6I CCWGG 2 cut(s) 132, 649
PspGI CCWGG 2 cut(s) 132, 649
PspPI GGNCC 4 cut(s) 440, 548, 656, 686
PstNI CAGNNNCTG 2 cut(s) 485, 593
RsaI GTAC 4 cut(s) 116, 375, 674, 707
RsaNI GTAC 4 cut(s) 115, 374, 673, 706
SacII CCGCGG 3 cut(s) 392, 500, 608
SatI GCNGC 5 cut(s) 157, 190, 392, 500, 608
Sau3AI GATC 2 cut(s) 171, 222
Sau96I GGNCC 4 cut(s) 440, 548, 656, 686
ScrFI CCNGG 2 cut(s) 134, 651
SduI GDGCHC 3 cut(s) 234, 466, 574
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 61
SfoI GGCGCC 4 cut(s) 205, 369, 477, 585
Sfr303I CCGCGG 3 cut(s) 392, 500, 608
SgrBI CCGCGG 3 cut(s) 392, 500, 608
SinI GGWCC 3 cut(s) 440, 548, 656
Sse9I AATT 1 cut(s) 89
SsiI CCGC 9 cut(s) 294, 389, 391, 497, 499, 605, 607, 747, 772
SspDI GGCGCC 4 cut(s) 203, 367, 475, 583
StyD4I CCNGG 2 cut(s) 132, 649
TaaI ACNGT 3 cut(s) 677, 683, 705
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 3 cut(s) 394, 502, 610
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 3 cut(s) 53, 688, 793
TseFI GTSAC 2 cut(s) 16, 766
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 766
TspGWI ACGGA 3 cut(s) 438, 546, 735
TspRI CASTG 3 cut(s) 53, 688, 793
VpaK11BI GGWCC 3 cut(s) 440, 548, 656
XapI RAATTY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.