RLG00000028756

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000455
Physical Location & Seq
Forward (+)
27482748 .. 27483917
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028756

Sequence Viewer

Length: 735 bp
ATGGTCGTTCCGCCCCTGTATAATTCAATCATTTCGCCCAAACTCTCTCCAAAACATCAGATCTCATCTGATCGAGCACTCACTGCAACAACAATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGACGCCATTAAGAGCATCGATATCAAAGAGCCTCCTCCTCCGGATGAGAAATCCAAAAAAACCAAGGACGTGTCTAAAGAGAAACAAAAGGAAGATAAAACCAAAGACGGCGAGAAGCTGAAGGATGAGTCGAAGCGGAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGTGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGACGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTGGGCCTGCCCCTTACATACAGTACGAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACCACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

245

Amino Acids

27.45

Weight (kDa)

8.69

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 544
AccII CGCG 1 cut(s) 499
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 6 cut(s) 11, 430, 497, 499, 648, 685
AcoI YGGCCR 1 cut(s) 503
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 3 cut(s) 122, 146, 434
AcyI GRCGYC 3 cut(s) 297, 466, 541
AfaI GTAC 3 cut(s) 209, 602, 608
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 1 cut(s) 27
AhlI ACTAGT 1 cut(s) 668
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 3 cut(s) 225, 469, 544
AluBI AGCT 3 cut(s) 277, 412, 660
AluI AGCT 3 cut(s) 277, 412, 660
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 3 cut(s) 503, 581, 626
ApeKI GCWGC 2 cut(s) 249, 282
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 3 cut(s) 476, 551, 581
AsuHPI GGTGA 4 cut(s) 121, 241, 305, 520
AvaII GGWCC 2 cut(s) 476, 551
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 236, 269
BccI CCATC 2 cut(s) 605, 734
BceAI ACGGC 2 cut(s) 418, 661
BciT130I CCWGG 3 cut(s) 227, 471, 546
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 192
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 2 cut(s) 154, 250
BglII AGATCT 2 cut(s) 60, 133
BisI GCNGC 2 cut(s) 250, 283
BlsI GCNGC 2 cut(s) 251, 284
Bme1390I CCNGG 3 cut(s) 227, 471, 546
Bme18I GGWCC 2 cut(s) 476, 551
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 3 cut(s) 476, 551, 581
BmiI GGNNCC 2 cut(s) 478, 553
BmrFI CCNGG 3 cut(s) 227, 471, 546
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 573
Bsa29I ATCGAT 1 cut(s) 312
BsaHI GRCGYC 3 cut(s) 297, 466, 541
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 357, 497
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bse118I RCCGGY 2 cut(s) 505, 628
Bse1I ACTGG 1 cut(s) 568
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 3 cut(s) 227, 471, 546
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 357, 497
BseGI GGATG 2 cut(s) 343, 424
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 3 cut(s) 318, 321, 670
BseXI GCAGC 2 cut(s) 236, 269
Bsh1236I CGCG 1 cut(s) 499
BshFI GGCC 3 cut(s) 505, 583, 628
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 3 cut(s) 335, 506, 629
BsiWI CGTACG 1 cut(s) 207
BslFI GGGAC 3 cut(s) 284, 462, 537
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 3 cut(s) 284, 462, 537
BsnI GGCC 3 cut(s) 505, 583, 628
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 5 cut(s) 60, 70, 133, 231, 264
BspACI CCGC 6 cut(s) 11, 430, 497, 499, 648, 685
BspANI GGCC 3 cut(s) 505, 583, 628
BspDI ATCGAT 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 478, 553
BspMAI CTGCAG 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 505, 628
BsrI ACTGG 1 cut(s) 568
BssAI RCCGGY 2 cut(s) 505, 628
BssECI CCNNGG 2 cut(s) 357, 497
BssMI GATC 5 cut(s) 60, 70, 133, 231, 264
BssNI GRCGYC 3 cut(s) 297, 466, 541
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 3 cut(s) 227, 471, 546
Bst4CI ACNGT 2 cut(s) 578, 600
BstACI GRCGYC 3 cut(s) 297, 466, 541
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 585, 721
BstDSI CCRYGG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 343, 424
BstFNI CGCG 1 cut(s) 499
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 5 cut(s) 63, 73, 136, 234, 267
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 5 cut(s) 60, 70, 133, 231, 264
BstMWI GCNNNNNNNGC 3 cut(s) 83, 489, 684
BstNI CCWGG 3 cut(s) 227, 471, 546
BstSCI CCNGG 3 cut(s) 225, 469, 544
BstSFI CTRYAG 2 cut(s) 154, 250
BstUI CGCG 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 236, 269
BstX2I RGATCY 2 cut(s) 60, 133
BstYI RGATCY 2 cut(s) 60, 133
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 3 cut(s) 505, 583, 628
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 497
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 343, 424
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 3 cut(s) 81, 146, 706
Cac8I GCNNGC 2 cut(s) 585, 721
CfoI GCGC 1 cut(s) 725
Cfr10I RCCGGY 2 cut(s) 505, 628
Cfr13I GGNCC 3 cut(s) 476, 551, 581
Cfr42I CCGCGG 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 2 cut(s) 305, 455
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 3 cut(s) 208, 601, 607
CviAII CATG 1 cut(s) 730
CviJI RGCY 8 cut(s) 277, 325, 412, 505, 583, 615, 628, 660
CviKI_1 RGCY 8 cut(s) 277, 325, 412, 505, 583, 615, 628, 660
CviQI GTAC 3 cut(s) 208, 601, 607
DpnI GATC 5 cut(s) 62, 72, 135, 233, 266
DpnII GATC 5 cut(s) 60, 70, 133, 231, 264
EaeI YGGCCR 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 192
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 476, 551
Eco57I CTGAAG 3 cut(s) 122, 146, 434
EcoRII CCWGG 3 cut(s) 225, 469, 544
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 1 cut(s) 733
FaqI GGGAC 3 cut(s) 284, 462, 537
FatI CATG 1 cut(s) 729
FauI CCCGC 1 cut(s) 692
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 250, 283
FokI GGATG 2 cut(s) 350, 431
Fsp4HI GCNGC 2 cut(s) 250, 283
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 724
GluI GCNGC 2 cut(s) 250, 283
HaeIII GGCC 3 cut(s) 505, 583, 628
HapII CCGG 3 cut(s) 335, 506, 629
HgaI GACGC 2 cut(s) 305, 455
HhaI GCGC 1 cut(s) 725
Hin1I GRCGYC 3 cut(s) 297, 466, 541
Hin1II CATG 1 cut(s) 733
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HinfI GANTC 2 cut(s) 121, 422
HpaII CCGG 3 cut(s) 335, 506, 629
HphI GGTGA 4 cut(s) 121, 241, 305, 520
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 3 cut(s) 60, 70, 126
Hpy188III TCNNGA 3 cut(s) 166, 257, 335
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 6 cut(s) 100, 121, 154, 409, 530, 618
HpyCH4III ACNGT 2 cut(s) 578, 600
HpyCH4IV ACGT 3 cut(s) 206, 363, 541
HpyCH4V TGCA 3 cut(s) 86, 252, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 489, 684
HpySE526I ACGT 3 cut(s) 206, 363, 541
Hsp92I GRCGYC 3 cut(s) 297, 466, 541
Hsp92II CATG 1 cut(s) 733
HspAI GCGC 1 cut(s) 723
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 231
KspI CCGCGG 1 cut(s) 500
Kzo9I GATC 5 cut(s) 60, 70, 133, 231, 264
LmnI GCTCC 1 cut(s) 657
Lsp1109I GCAGC 2 cut(s) 236, 269
LweI GCATC 1 cut(s) 318
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 1 cut(s) 669
MaeII ACGT 3 cut(s) 206, 363, 541
MaeIII GTNAC 8 cut(s) 109, 293, 455, 530, 572, 641, 671, 679
MalI GATC 5 cut(s) 62, 72, 135, 233, 266
MboI GATC 5 cut(s) 60, 70, 133, 231, 264
MboII GAAGA 5 cut(s) 128, 229, 398, 445, 716
MflI RGATCY 2 cut(s) 60, 133
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 22, 182
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 8 cut(s) 198, 284, 336, 339, 342, 455, 504, 648
MroI TCCGGA 1 cut(s) 334
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 3 cut(s) 335, 506, 629
MspR9I CCNGG 3 cut(s) 227, 471, 546
MvaI CCWGG 3 cut(s) 227, 471, 546
MvnI CGCG 1 cut(s) 499
MwoI GCNNNNNNNGC 3 cut(s) 83, 489, 684
NdeII GATC 5 cut(s) 60, 70, 133, 231, 264
NlaIII CATG 1 cut(s) 733
NlaIV GGNNCC 2 cut(s) 478, 553
NmuCI GTSAC 3 cut(s) 109, 293, 679
PfeI GAWTC 1 cut(s) 121
Pfl23II CGTACG 1 cut(s) 207
PkrI GCNGC 2 cut(s) 251, 284
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp6I CCWGG 3 cut(s) 225, 469, 544
PspGI CCWGG 3 cut(s) 225, 469, 544
PspLI CGTACG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 478, 553
PspPI GGNCC 3 cut(s) 476, 551, 581
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 2 cut(s) 60, 133
RsaI GTAC 3 cut(s) 209, 602, 608
RsaNI GTAC 3 cut(s) 208, 601, 607
RseI CAYNNNNRTG 1 cut(s) 239
SacII CCGCGG 1 cut(s) 500
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 2 cut(s) 250, 283
Sau3AI GATC 5 cut(s) 60, 70, 133, 231, 264
Sau96I GGNCC 3 cut(s) 476, 551, 581
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 227, 471, 546
SduI GDGCHC 1 cut(s) 79
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 2 cut(s) 154, 250
Sfr303I CCGCGG 1 cut(s) 500
SgrBI CCGCGG 1 cut(s) 500
SinI GGWCC 2 cut(s) 476, 551
SmiMI CAYNNNNRTG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 2 cut(s) 22, 182
SsiI CCGC 6 cut(s) 11, 430, 497, 499, 648, 685
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 3 cut(s) 225, 469, 544
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 578, 600
TaiI ACGT 3 cut(s) 209, 366, 544
TaqI TCGA 3 cut(s) 73, 312, 425
TasI AATT 2 cut(s) 22, 182
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 3 cut(s) 88, 146, 706
TseFI GTSAC 3 cut(s) 109, 293, 679
TseI GCWGC 2 cut(s) 249, 282
Tsp45I GTSAC 3 cut(s) 109, 293, 679
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 3 cut(s) 88, 146, 706
VpaK11BI GGWCC 2 cut(s) 476, 551
XapI RAATTY 1 cut(s) 182
XspI CTAG 1 cut(s) 669
ZraI GACGTC 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.