Prupe.4G004900_v2.0.a1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000455
Physical Location & Seq
Forward (+)
300439 .. 302471
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G004900.1

Sequence Viewer

Length: 750 bp
ATGGCAGAAAAAGAAAAGGAGACGATAATGGTGCTGAAGGTGGACCTTCAGTGTCACAAATGCTATAAGAAGGTCAAAAAAGTTCTCTGCAAATTCCCTCAAATACGAGACCAGATATACGACGAGAAGCAAAACCAGGTGGTCATCAAAGTGGTATGCTGCAGTCCAGAGAAGATAAGGGACAGGATATGCTGCAAAGGTGGGGGAGCCATCAAGGGCATTGAGATCAAAGAGCCTGAGAAGCCCAAACCACCACCGCCGGCAGACAAACCCAAACAAGCACCGCCGGCAGACAAACCCAAACCACCACCGCCGGCAGACAAACCCAAACCACCACCGCCGGCAGACAAACCAAAACCACCACCGGCGGCAGACAAACCCAAACCACCACCGCCCGAAGACAAACCCAAACCACCACCGCCGGCAGACAAACCCAAACCACCGCCGGAAGACAAACCCAAACCACCGCCGGCAGACAACCCCAAACCTCCACCTCCACCTGCGCCTGTTCCTATATGCTACCCACCGCCTAACGTGAACGCGTGCTGTATGGATTGTTACCATGGGCATCCCGGTGGGCCATGCCAGACTGGCTACGGTGGAATTGCCCCATACATCCAGTATGATGGTTACTATGGAAGGCCTGTGTACGACAGTTATGGCGGTGGCAGGAGCTACAATACCAACTATTGTGTTGCCCGCTCTGACTGTTTCAGTGAAGAAAATCCCCAAGGCTGCACAGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

250

Amino Acids

27.2

Weight (kDa)

8.89

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 508
Acc36I ACCTGC 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 702
AccII CGCG 1 cut(s) 542
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AfaI GTAC 1 cut(s) 650
AflIII ACRYGT 1 cut(s) 540
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 1 cut(s) 675
AluI AGCT 1 cut(s) 675
Alw26I GTCTC 2 cut(s) 14, 102
AoxI GGCC 2 cut(s) 578, 641
ApeKI GCWGC 3 cut(s) 159, 192, 735
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 43, 578
AsuC2I CCSGG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 43
BbsI GAAGAC 2 cut(s) 405, 456
BbvI GCAGC 3 cut(s) 146, 179, 722
BccI CCATC 2 cut(s) 218, 620
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 14, 102
BfmI CTRYAG 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 591
BisI GCNGC 4 cut(s) 160, 193, 369, 736
BlsI GCNGC 4 cut(s) 161, 194, 370, 737
Bme1390I CCNGG 2 cut(s) 137, 573
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 43, 578
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 137, 573
BmsI GCATC 1 cut(s) 577
BpiI GAAGAC 2 cut(s) 405, 456
BpuMI CCSGG 1 cut(s) 573
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 562, 730
Bse118I RCCGGY 7 cut(s) 259, 286, 313, 340, 364, 421, 469
Bse1I ACTGG 2 cut(s) 595, 619
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 562, 730
BseGI GGATG 2 cut(s) 568, 615
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 595, 619
BseXI GCAGC 3 cut(s) 146, 179, 722
BsgI GTGCAG 1 cut(s) 721
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 2 cut(s) 580, 643
BsiSI CCGG 9 cut(s) 260, 287, 314, 341, 365, 422, 446, 470, 573
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 14, 102
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 580, 643
Bso31I GGTCTC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 562
BspANI GGCC 2 cut(s) 580, 643
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 702
BsrFI RCCGGY 7 cut(s) 259, 286, 313, 340, 364, 421, 469
BsrI ACTGG 2 cut(s) 595, 619
BssAI RCCGGY 7 cut(s) 259, 286, 313, 340, 364, 421, 469
BssECI CCNNGG 2 cut(s) 562, 730
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 562, 730
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 4 cut(s) 599, 656, 710, 742
BstC8I GCNNGC 8 cut(s) 261, 288, 315, 342, 423, 471, 544, 700
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 2 cut(s) 568, 615
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 14, 102
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 241, 287, 591
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 135, 571
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 3 cut(s) 146, 179, 722
BstV2I GAAGAC 2 cut(s) 405, 456
BstXI CCANNNNNNTGG 1 cut(s) 626
BsuRI GGCC 2 cut(s) 580, 643
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 2 cut(s) 568, 615
BtsIMutI CAGTG 2 cut(s) 56, 721
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 8 cut(s) 261, 288, 315, 342, 423, 471, 544, 700
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 7 cut(s) 259, 286, 313, 340, 364, 421, 469
Cfr13I GGNCC 2 cut(s) 43, 578
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 1 cut(s) 649
CviAII CATG 3 cut(s) 563, 582, 745
CviJI RGCY 8 cut(s) 209, 235, 244, 580, 594, 643, 675, 735
CviKI_1 RGCY 8 cut(s) 209, 235, 244, 580, 594, 643, 675, 735
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 562, 730
Eco147I AGGCCT 1 cut(s) 643
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 32, 56
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 562, 730
ErhI CCWWGG 2 cut(s) 562, 730
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 3 cut(s) 566, 585, 748
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 562, 581, 744
FauI CCCGC 1 cut(s) 707
Fnu4HI GCNGC 4 cut(s) 160, 193, 369, 736
FokI GGATG 2 cut(s) 555, 602
Fsp4HI GCNGC 4 cut(s) 160, 193, 369, 736
GlaI GCGC 1 cut(s) 504
GluI GCNGC 4 cut(s) 160, 193, 369, 736
HaeIII GGCC 2 cut(s) 580, 643
HapII CCGG 9 cut(s) 260, 287, 314, 341, 365, 422, 446, 470, 573
HhaI GCGC 1 cut(s) 505
Hin1II CATG 3 cut(s) 566, 585, 748
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HpaII CCGG 9 cut(s) 260, 287, 314, 341, 365, 422, 446, 470, 573
Hpy166II GTNNAC 3 cut(s) 43, 538, 649
Hpy188I TCNGA 1 cut(s) 706
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 3 cut(s) 43, 538, 649
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 31, 56, 64, 633
HpyCH4III ACNGT 4 cut(s) 599, 656, 710, 742
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 4 cut(s) 90, 162, 195, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 287, 591
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 3 cut(s) 566, 585, 748
HspAI GCGC 1 cut(s) 503
KroI GCCGGC 6 cut(s) 259, 286, 313, 340, 421, 469
KroNI GCCGGC 6 cut(s) 261, 288, 315, 342, 423, 471
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 206, 672
Lsp1109I GCAGC 3 cut(s) 146, 179, 722
LweI GCATC 1 cut(s) 577
MabI ACCWGGT 1 cut(s) 135
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 3 cut(s) 53, 557, 629
MalI GATC 1 cut(s) 227
MbiI CCGCTC 1 cut(s) 702
MboI GATC 1 cut(s) 225
MboII GAAGA 4 cut(s) 184, 410, 461, 731
MluCI AATT 2 cut(s) 92, 603
MluI ACGCGT 1 cut(s) 540
MnlI CCTC 3 cut(s) 108, 498, 504
MroNI GCCGGC 6 cut(s) 259, 286, 313, 340, 421, 469
MslI CAYNNNNRTG 3 cut(s) 149, 573, 743
MspI CCGG 9 cut(s) 260, 287, 314, 341, 365, 422, 446, 470, 573
MspR9I CCNGG 2 cut(s) 137, 573
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 3 cut(s) 241, 287, 591
NaeI GCCGGC 6 cut(s) 261, 288, 315, 342, 423, 471
NciI CCSGG 1 cut(s) 573
NcoI CCATGG 1 cut(s) 562
NdeII GATC 1 cut(s) 225
NgoMIV GCCGGC 6 cut(s) 259, 286, 313, 340, 421, 469
NlaIII CATG 3 cut(s) 566, 585, 748
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 53
PaqCI CACCTGC 1 cut(s) 508
PceI AGGCCT 1 cut(s) 643
PdiI GCCGGC 6 cut(s) 261, 288, 315, 342, 423, 471
PkrI GCNGC 4 cut(s) 161, 194, 370, 737
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 43, 578
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
RseI CAYNNNNRTG 3 cut(s) 149, 573, 743
SatI GCNGC 4 cut(s) 160, 193, 369, 736
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 2 cut(s) 43, 578
ScrFI CCNGG 2 cut(s) 137, 573
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 160
SgrAI CRCCGGYG 1 cut(s) 364
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 3 cut(s) 149, 573, 743
Sse9I AATT 2 cut(s) 92, 603
SseBI AGGCCT 1 cut(s) 643
StuI AGGCCT 1 cut(s) 643
StyD4I CCNGG 2 cut(s) 135, 571
StyI CCWWGG 2 cut(s) 562, 730
TaaI ACNGT 4 cut(s) 599, 656, 710, 742
TaiI ACGT 1 cut(s) 537
TasI AATT 2 cut(s) 92, 603
TauI GCSGC 1 cut(s) 371
TscAI CASTG 2 cut(s) 56, 721
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 3 cut(s) 159, 192, 735
Tsp45I GTSAC 1 cut(s) 53
TspRI CASTG 2 cut(s) 56, 721
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.