Rroxscaffold_4G00307890

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000455
Physical Location & Seq
Forward (+)
29357497 .. 29359421
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307890.1

Sequence Viewer

Length: 744 bp
ATGTCCCAAGACTTGAATACCCTCCAAGCCCAAATGGCAATTCCGAGTCTTCTCCCAAAAGCTATATTTGGGTCAATCCGCACAGCTCATGAAGAAATCCTACAGTTCCAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGACGCCATTAAGAGCATCGATATCAAAGAGCCCGAGAAGCTCAAGCCTCCTCCGGATGACAAATCCAAAAAAGCCAAGGACGTGTCTAAAGAGAAACAAAAGGAAGACAAATCCAAAGACGACGAGAAGCCGAAGGATGAGTCGAAGCGGAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGTGGCCGGTGAAGCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTGGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACCACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

247

Amino Acids

27.84

Weight (kDa)

8.53

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 514
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 6 cut(s) 79, 445, 512, 514, 657, 694
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 125, 149
AcyI GRCGYC 3 cut(s) 300, 481, 556
AfaI GTAC 2 cut(s) 212, 617
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 1 cut(s) 16
AhlI ACTAGT 1 cut(s) 677
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 4 cut(s) 108, 228, 484, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 5 cut(s) 62, 86, 280, 337, 669
AluI AGCT 5 cut(s) 62, 86, 280, 337, 669
Alw26I GTCTC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 3 cut(s) 518, 596, 635
ApeKI GCWGC 2 cut(s) 252, 285
ApoI RAATTY 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 3 cut(s) 491, 566, 596
AsuHPI GGTGA 4 cut(s) 124, 244, 308, 535
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 2 cut(s) 491, 566
BanII GRGCYC 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbsI GAAGAC 2 cut(s) 41, 408
BbvI GCAGC 2 cut(s) 239, 272
BccI CCATC 2 cut(s) 614, 743
BceAI ACGGC 2 cut(s) 514, 670
BciT130I CCWGG 4 cut(s) 110, 230, 486, 561
BclI TGATCA 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 195
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 1 cut(s) 678
BfmI CTRYAG 3 cut(s) 101, 157, 253
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 253, 286
BlsI GCNGC 2 cut(s) 254, 287
Bme1390I CCNGG 4 cut(s) 110, 230, 486, 561
Bme18I GGWCC 2 cut(s) 491, 566
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 3 cut(s) 491, 566, 596
BmiI GGNNCC 2 cut(s) 493, 568
BmrFI CCNGG 4 cut(s) 110, 230, 486, 561
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 588
BpiI GAAGAC 2 cut(s) 41, 408
BpuEI CTTGAG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 3 cut(s) 300, 481, 556
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 372, 512
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 493, 523
Bse118I RCCGGY 2 cut(s) 520, 637
Bse1I ACTGG 1 cut(s) 583
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 4 cut(s) 110, 230, 486, 561
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 372, 512
BseGI GGATG 2 cut(s) 358, 439
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 2 cut(s) 336, 679
BseXI GCAGC 2 cut(s) 239, 272
Bsh1236I CGCG 1 cut(s) 514
BshFI GGCC 3 cut(s) 520, 598, 637
BshVI ATCGAT 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 3 cut(s) 350, 521, 638
BsiWI CGTACG 1 cut(s) 210
BslFI GGGAC 3 cut(s) 287, 477, 552
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 3 cut(s) 287, 477, 552
BsnI GGCC 3 cut(s) 520, 598, 637
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 330
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 234, 267
BspACI CCGC 6 cut(s) 79, 445, 512, 514, 657, 694
BspANI GGCC 3 cut(s) 520, 598, 637
BspDI ATCGAT 1 cut(s) 315
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 1 cut(s) 514
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 493, 568
BspMAI CTGCAG 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 195
BsrFI RCCGGY 2 cut(s) 520, 637
BsrI ACTGG 1 cut(s) 583
BssAI RCCGGY 2 cut(s) 520, 637
BssECI CCNNGG 2 cut(s) 372, 512
BssMI GATC 2 cut(s) 234, 267
BssNI GRCGYC 3 cut(s) 300, 481, 556
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 4 cut(s) 110, 230, 486, 561
Bst4CI ACNGT 3 cut(s) 105, 593, 615
BstACI GRCGYC 3 cut(s) 300, 481, 556
BstC8I GCNNGC 2 cut(s) 600, 730
BstDSI CCRYGG 1 cut(s) 512
BstF5I GGATG 2 cut(s) 358, 439
BstFNI CGCG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 2 cut(s) 237, 270
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 234, 267
BstMWI GCNNNNNNNGC 5 cut(s) 35, 334, 504, 526, 693
BstNI CCWGG 4 cut(s) 110, 230, 486, 561
BstSCI CCNGG 4 cut(s) 108, 228, 484, 559
BstSFI CTRYAG 3 cut(s) 101, 157, 253
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 2 cut(s) 239, 272
BstV2I GAAGAC 2 cut(s) 41, 408
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 3 cut(s) 520, 598, 637
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 512
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 358, 439
BtsIMutI CAGTG 2 cut(s) 149, 715
Cac8I GCNNGC 2 cut(s) 600, 730
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 734
Cfr10I RCCGGY 2 cut(s) 520, 637
Cfr13I GGNCC 3 cut(s) 491, 566, 596
Cfr42I CCGCGG 1 cut(s) 515
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 3 cut(s) 308, 470, 545
CsiI ACCWGGT 1 cut(s) 228
Csp6I GTAC 2 cut(s) 211, 616
CviAII CATG 2 cut(s) 89, 739
CviQI GTAC 2 cut(s) 211, 616
DpnI GATC 2 cut(s) 236, 269
DpnII GATC 2 cut(s) 234, 267
EaeI YGGCCR 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 491, 566
Eco57I CTGAAG 2 cut(s) 125, 149
Eco88I CYCGRG 1 cut(s) 329
EcoRII CCWGG 4 cut(s) 108, 228, 484, 559
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 92, 742
FaqI GGGAC 3 cut(s) 287, 477, 552
FatI CATG 2 cut(s) 88, 738
FauI CCCGC 1 cut(s) 701
FbaI TGATCA 1 cut(s) 234
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 253, 286
FokI GGATG 2 cut(s) 365, 446
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 253, 286
FspBI CTAG 1 cut(s) 678
GlaI GCGC 1 cut(s) 733
GluI GCNGC 2 cut(s) 253, 286
HaeIII GGCC 3 cut(s) 520, 598, 637
HapII CCGG 3 cut(s) 350, 521, 638
HgaI GACGC 3 cut(s) 308, 470, 545
HhaI GCGC 1 cut(s) 734
Hin1I GRCGYC 3 cut(s) 300, 481, 556
Hin1II CATG 2 cut(s) 92, 742
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HinfI GANTC 3 cut(s) 46, 124, 437
HpaII CCGG 3 cut(s) 350, 521, 638
HphI GGTGA 4 cut(s) 124, 244, 308, 535
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 45, 129
Hpy188III TCNNGA 4 cut(s) 89, 169, 260, 350
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 218, 422
HpyAV CCTTC 6 cut(s) 124, 149, 157, 424, 545, 627
HpyCH4III ACNGT 3 cut(s) 105, 593, 615
HpyCH4IV ACGT 2 cut(s) 209, 378
HpyCH4V TGCA 2 cut(s) 255, 288
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 334, 504, 526, 693
HpySE526I ACGT 2 cut(s) 209, 378
Hsp92I GRCGYC 3 cut(s) 300, 481, 556
Hsp92II CATG 2 cut(s) 92, 742
HspAI GCGC 1 cut(s) 732
Kpn2I TCCGGA 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 234
KspI CCGCGG 1 cut(s) 515
Kzo9I GATC 2 cut(s) 234, 267
LmnI GCTCC 1 cut(s) 666
Lsp1109I GCAGC 2 cut(s) 239, 272
LweI GCATC 1 cut(s) 321
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 1 cut(s) 678
MaeII ACGT 2 cut(s) 209, 378
MaeIII GTNAC 8 cut(s) 112, 296, 470, 545, 587, 650, 680, 688
MalI GATC 2 cut(s) 236, 269
MboI GATC 2 cut(s) 234, 267
MboII GAAGA 6 cut(s) 41, 104, 232, 413, 460, 725
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 39, 185
MlyI GAGTC 2 cut(s) 55, 446
MnlI CCTC 8 cut(s) 32, 201, 287, 354, 357, 470, 519, 657
MroI TCCGGA 1 cut(s) 349
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 3 cut(s) 350, 521, 638
MspR9I CCNGG 4 cut(s) 110, 230, 486, 561
MvaI CCWGG 4 cut(s) 110, 230, 486, 561
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 5 cut(s) 35, 334, 504, 526, 693
NdeII GATC 2 cut(s) 234, 267
NlaIII CATG 2 cut(s) 92, 742
NlaIV GGNNCC 2 cut(s) 493, 568
NmuCI GTSAC 3 cut(s) 112, 296, 688
PagI TCATGA 1 cut(s) 88
PfeI GAWTC 1 cut(s) 124
Pfl23II CGTACG 1 cut(s) 210
PkrI GCNGC 2 cut(s) 254, 287
PleI GAGTC 2 cut(s) 54, 445
PpsI GAGTC 2 cut(s) 54, 445
Psp6I CCWGG 4 cut(s) 108, 228, 484, 559
PspGI CCWGG 4 cut(s) 108, 228, 484, 559
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 493, 568
PspPI GGNCC 3 cut(s) 491, 566, 596
PstI CTGCAG 1 cut(s) 257
RsaI GTAC 2 cut(s) 212, 617
RsaNI GTAC 2 cut(s) 211, 616
RseI CAYNNNNRTG 1 cut(s) 242
SacII CCGCGG 1 cut(s) 515
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 253, 286
Sau3AI GATC 2 cut(s) 234, 267
Sau96I GGNCC 3 cut(s) 491, 566, 596
SchI GAGTC 2 cut(s) 55, 446
ScrFI CCNGG 4 cut(s) 110, 230, 486, 561
SduI GDGCHC 1 cut(s) 330
SexAI ACCWGGT 1 cut(s) 228
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 3 cut(s) 101, 157, 253
Sfr303I CCGCGG 1 cut(s) 515
SgrBI CCGCGG 1 cut(s) 515
SinI GGWCC 2 cut(s) 491, 566
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SpeI ACTAGT 1 cut(s) 677
Sse9I AATT 2 cut(s) 39, 185
SsiI CCGC 6 cut(s) 79, 445, 512, 514, 657, 694
SspMI CTAG 1 cut(s) 678
StyD4I CCNGG 4 cut(s) 108, 228, 484, 559
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 105, 593, 615
TaiI ACGT 2 cut(s) 212, 381
TaqI TCGA 2 cut(s) 315, 440
TasI AATT 2 cut(s) 39, 185
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 149, 715
TseFI GTSAC 3 cut(s) 112, 296, 688
TseI GCWGC 2 cut(s) 252, 285
Tsp45I GTSAC 3 cut(s) 112, 296, 688
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 2 cut(s) 149, 715
VpaK11BI GGWCC 2 cut(s) 491, 566
XapI RAATTY 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.