Rh2CG158000

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000455
Physical Location & Seq
Forward (+)
13756449 .. 13758610
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG158000.1

Sequence Viewer

Length: 870 bp
ATGATTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTACAGGAAGGTCAAGCAAGTTCTCTGTAAATTCCCACAAATACGAGACCAGAGGTACGACGAGAAGAAGAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCCGCAAAGGAGGTGGCGTCATTAAGTGGATCGAGATCGAAGAGCCTCCGCCTCCGCCTCCGATCGAAAAGCCTCCTCCTCCGCCTCCGATCGAAAAGCCTCCTCCCCCGCCTCCGATCGAAAAGCCTCCTCCTCCGCCTCCGATCGAAAAGCCACCTCCTCCTCCTCCGATTGAAAAGCCTCCTCCTCCGCCTCCGATCGAAAAGCCTCCTCCTCCGCCTCCGTCTCCTTGCCGTTGCCGTTGCCGTTGCGGTTGCGGTTGCCGCCCTGTGAAACCGTGTTGTTGGGATTGTTACGAAGGGCTTCCTGGTGGTCCCTGCGAAACGTTCCCTCGGCGGCCGGTGAAACCGTGTTGCTCGGATTGTCGCGAAGGGCGTCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAAAACGTGTTGTACGGATTGTTACGAAGGTCGTCCCGGCGGTCCCTGCGAAACTTACCGTCCGCGGCCGGTGGACACGTGTTGTACGGATTGTGAGGAAGGTCGTCCTGGCGGTCCCTGCGAAACTGGGTATGGTTACGGAGGGCTTGTCCCTTACATACAGTATGATGGCCACTATGGAAGGCCGGTGTATGATAGTTACGGCGGTGGGAGGAGCAGTACCACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

289

Amino Acids

32.02

Weight (kDa)

8.23

Isoelectric Point (pI)

78.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 531, 643
AclI AACGTT 1 cut(s) 488
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 4 cut(s) 500, 572, 644, 748
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 5, 29
AcvI CACGTG 1 cut(s) 657
AcyI GRCGYC 2 cut(s) 180, 538
AfaI GTAC 4 cut(s) 92, 592, 664, 799
AflIII ACRYGT 3 cut(s) 584, 654, 656
AgsI TTSAA 1 cut(s) 338
AhlI ACTAGT 1 cut(s) 803
AjnI CCWGG 4 cut(s) 108, 469, 541, 685
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 75, 393
AlwI GGATC 1 cut(s) 200
AoxI GGCC 5 cut(s) 500, 572, 644, 748, 761
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 860
AspS9I GGNCC 4 cut(s) 476, 548, 620, 692
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 3 cut(s) 124, 517, 589
AvaII GGWCC 4 cut(s) 476, 548, 620, 692
BalI TGGCCA 1 cut(s) 750
BbrPI CACGTG 1 cut(s) 657
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 740, 869
BceAI ACGGC 4 cut(s) 381, 387, 393, 796
BciT130I CCWGG 4 cut(s) 110, 471, 543, 687
BclI TGATCA 1 cut(s) 114
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 2 cut(s) 75, 393
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 2 cut(s) 37, 133
BisI GCNGC 6 cut(s) 133, 166, 427, 500, 572, 644
BlsI GCNGC 6 cut(s) 134, 167, 428, 501, 573, 645
Bme1390I CCNGG 5 cut(s) 110, 471, 543, 615, 687
Bme18I GGWCC 4 cut(s) 476, 548, 620, 692
BmgT120I GGNCC 4 cut(s) 476, 548, 620, 692
BmiI GGNNCC 4 cut(s) 478, 550, 622, 694
BmrFI CCNGG 5 cut(s) 110, 471, 543, 615, 687
BmrI ACTGGG 1 cut(s) 714
BmuI ACTGGG 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 657
BsaBI GATNNNNATC 1 cut(s) 197
BsaHI GRCGYC 2 cut(s) 180, 538
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 494, 566, 641
BsaXI ACNNNNNCTCC 6 cut(s) 165, 195, 711, 741, 781, 811
Bse118I RCCGGY 4 cut(s) 502, 574, 646, 763
Bse1I ACTGG 1 cut(s) 709
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 4 cut(s) 110, 471, 543, 687
BseDI CCNNGG 3 cut(s) 494, 566, 641
BseJI GATNNNNATC 1 cut(s) 197
BseNI ACTGG 1 cut(s) 709
BseX3I CGGCCG 3 cut(s) 500, 572, 644
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 2 cut(s) 531, 643
Bsh1285I CGRYCG 8 cut(s) 228, 255, 282, 309, 363, 503, 575, 647
BshFI GGCC 5 cut(s) 502, 574, 646, 750, 763
BsiEI CGRYCG 8 cut(s) 228, 255, 282, 309, 363, 503, 575, 647
BsiSI CCGG 5 cut(s) 503, 575, 615, 647, 764
BslFI GGGAC 7 cut(s) 167, 462, 534, 597, 606, 678, 713
BsmAI GTCTC 2 cut(s) 75, 393
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 7 cut(s) 167, 462, 534, 597, 606, 678, 713
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 5 cut(s) 502, 574, 646, 750, 763
Bso31I GGTCTC 1 cut(s) 75
Bsp143I GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
Bsp68I TCGCGA 1 cut(s) 531
BspANI GGCC 5 cut(s) 502, 574, 646, 750, 763
BspFNI CGCG 2 cut(s) 531, 643
BspLI GGNNCC 4 cut(s) 478, 550, 622, 694
BspMAI CTGCAG 1 cut(s) 137
BspPI GGATC 1 cut(s) 200
BspQI GCTCTTC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 75
BsrFI RCCGGY 4 cut(s) 502, 574, 646, 763
BsrI ACTGG 1 cut(s) 709
BssAI RCCGGY 4 cut(s) 502, 574, 646, 763
BssECI CCNNGG 3 cut(s) 494, 566, 641
BssMI GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
BssNI GRCGYC 2 cut(s) 180, 538
Bst2UI CCWGG 4 cut(s) 110, 471, 543, 687
Bst4CI ACNGT 4 cut(s) 441, 513, 638, 741
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 2 cut(s) 180, 538
BstBAI YACGTR 1 cut(s) 657
BstC8I GCNNGC 1 cut(s) 856
BstDSI CCRYGG 1 cut(s) 641
BstFNI CGCG 2 cut(s) 531, 643
BstHHI GCGC 1 cut(s) 860
BstKTI GATC 9 cut(s) 117, 150, 195, 201, 228, 255, 282, 309, 363
BstMAI GTCTC 2 cut(s) 75, 393
BstMBI GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
BstMCI CGRYCG 8 cut(s) 228, 255, 282, 309, 363, 503, 575, 647
BstMWI GCNNNNNNNGC 4 cut(s) 426, 624, 696, 819
BstNI CCWGG 4 cut(s) 110, 471, 543, 687
BstSCI CCNGG 5 cut(s) 108, 469, 541, 613, 685
BstSFI CTRYAG 2 cut(s) 37, 133
BstUI CGCG 2 cut(s) 531, 643
BstV1I GCAGC 1 cut(s) 119
BstZI CGGCCG 3 cut(s) 500, 572, 644
BsuRI GGCC 5 cut(s) 502, 574, 646, 750, 763
BtgI CCRYGG 1 cut(s) 641
BtsIMutI CAGTG 2 cut(s) 29, 841
BtuMI TCGCGA 1 cut(s) 531
Cac8I GCNNGC 1 cut(s) 856
CfoI GCGC 1 cut(s) 860
Cfr10I RCCGGY 4 cut(s) 502, 574, 646, 763
Cfr13I GGNCC 4 cut(s) 476, 548, 620, 692
Cfr42I CCGCGG 1 cut(s) 644
CseI GACGC 2 cut(s) 169, 527
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 4 cut(s) 91, 591, 663, 798
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 1 cut(s) 865
CviQI GTAC 4 cut(s) 91, 591, 663, 798
DpnI GATC 9 cut(s) 116, 149, 194, 200, 227, 254, 281, 308, 362
DpnII GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
EaeI YGGCCR 4 cut(s) 500, 572, 644, 748
EagI CGGCCG 3 cut(s) 500, 572, 644
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 6 cut(s) 201, 207, 234, 288, 342, 369
EclXI CGGCCG 3 cut(s) 500, 572, 644
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 4 cut(s) 476, 548, 620, 692
Eco52I CGGCCG 3 cut(s) 500, 572, 644
Eco57I CTGAAG 2 cut(s) 5, 29
Eco72I CACGTG 1 cut(s) 657
EcoRII CCWGG 4 cut(s) 108, 469, 541, 685
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 1 cut(s) 868
FaiI YATR 7 cut(s) 163, 711, 737, 744, 756, 771, 866
FaqI GGGAC 7 cut(s) 167, 462, 534, 597, 606, 678, 713
FatI CATG 1 cut(s) 864
FauI CCCGC 2 cut(s) 279, 827
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 6 cut(s) 133, 166, 427, 500, 572, 644
Fsp4HI GCNGC 6 cut(s) 133, 166, 427, 500, 572, 644
FspBI CTAG 1 cut(s) 804
GlaI GCGC 1 cut(s) 859
GluI GCNGC 6 cut(s) 133, 166, 427, 500, 572, 644
HaeIII GGCC 5 cut(s) 502, 574, 646, 750, 763
HapII CCGG 5 cut(s) 503, 575, 615, 647, 764
HgaI GACGC 2 cut(s) 169, 527
HhaI GCGC 1 cut(s) 860
Hin1I GRCGYC 2 cut(s) 180, 538
Hin1II CATG 1 cut(s) 868
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 4
HpaII CCGG 5 cut(s) 503, 575, 615, 647, 764
HphI GGTGA 3 cut(s) 124, 517, 589
Hpy166II GTNNAC 2 cut(s) 16, 652
Hpy188I TCNGA 8 cut(s) 9, 225, 252, 279, 306, 333, 360, 523
Hpy188III TCNNGA 3 cut(s) 140, 196, 530
Hpy8I GTNNAC 2 cut(s) 16, 652
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 8 cut(s) 4, 29, 37, 455, 527, 599, 671, 753
HpyCH4III ACNGT 4 cut(s) 441, 513, 638, 741
HpyCH4IV ACGT 3 cut(s) 488, 584, 656
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 4 cut(s) 426, 624, 696, 819
HpySE526I ACGT 3 cut(s) 488, 584, 656
Hsp92I GRCGYC 2 cut(s) 180, 538
Hsp92II CATG 1 cut(s) 868
HspAI GCGC 1 cut(s) 858
Ksp22I TGATCA 1 cut(s) 114
KspI CCGCGG 1 cut(s) 644
Kzo9I GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 792
Lsp1109I GCAGC 1 cut(s) 119
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 1 cut(s) 804
MaeII ACGT 3 cut(s) 488, 584, 656
MaeIII GTNAC 6 cut(s) 455, 599, 713, 776, 806, 814
MalI GATC 9 cut(s) 116, 149, 194, 200, 227, 254, 281, 308, 362
MboI GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
MboII GAAGA 4 cut(s) 112, 115, 215, 851
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 750
Mox20I TGGCCA 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 465
MscI TGGCCA 1 cut(s) 750
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 5 cut(s) 503, 575, 615, 647, 764
MspR9I CCNGG 5 cut(s) 110, 471, 543, 615, 687
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 4 cut(s) 110, 471, 543, 687
MvnI CGCG 2 cut(s) 531, 643
MwoI GCNNNNNNNGC 4 cut(s) 426, 624, 696, 819
NciI CCSGG 1 cut(s) 615
NdeII GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
NlaIII CATG 1 cut(s) 868
NlaIV GGNNCC 4 cut(s) 478, 550, 622, 694
NmeAIII GCCGAG 2 cut(s) 475, 547
NmuCI GTSAC 1 cut(s) 814
NruI TCGCGA 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PctI GAATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 6 cut(s) 134, 167, 428, 501, 573, 645
Ple19I CGATCG 5 cut(s) 228, 255, 282, 309, 363
PmaCI CACGTG 1 cut(s) 657
PmlI CACGTG 1 cut(s) 657
Ppu21I YACGTR 1 cut(s) 657
Psp1406I AACGTT 1 cut(s) 488
Psp6I CCWGG 4 cut(s) 108, 469, 541, 685
PspCI CACGTG 1 cut(s) 657
PspGI CCWGG 4 cut(s) 108, 469, 541, 685
PspN4I GGNNCC 4 cut(s) 478, 550, 622, 694
PspPI GGNCC 4 cut(s) 476, 548, 620, 692
PstI CTGCAG 1 cut(s) 137
PvuI CGATCG 5 cut(s) 228, 255, 282, 309, 363
RruI TCGCGA 1 cut(s) 531
RsaI GTAC 4 cut(s) 92, 592, 664, 799
RsaNI GTAC 4 cut(s) 91, 591, 663, 798
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 1 cut(s) 644
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 6 cut(s) 133, 166, 427, 500, 572, 644
Sau3AI GATC 9 cut(s) 114, 147, 192, 198, 225, 252, 279, 306, 360
Sau96I GGNCC 4 cut(s) 476, 548, 620, 692
ScrFI CCNGG 5 cut(s) 110, 471, 543, 615, 687
SexAI ACCWGGT 1 cut(s) 108
SfcI CTRYAG 2 cut(s) 37, 133
Sfr303I CCGCGG 1 cut(s) 644
SgrBI CCGCGG 1 cut(s) 644
SinI GGWCC 4 cut(s) 476, 548, 620, 692
SmiMI CAYNNNNRTG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 803
Sse9I AATT 1 cut(s) 65
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 5 cut(s) 108, 469, 541, 613, 685
TaaI ACNGT 4 cut(s) 441, 513, 638, 741
TaiI ACGT 3 cut(s) 491, 587, 659
TaqI TCGA 7 cut(s) 195, 201, 228, 255, 282, 309, 363
TasI AATT 1 cut(s) 65
TauI GCSGC 5 cut(s) 168, 429, 502, 574, 646
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 29, 841
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 814
TspGWI ACGGA 4 cut(s) 375, 608, 680, 732
TspRI CASTG 2 cut(s) 29, 841
VpaK11BI GGWCC 4 cut(s) 476, 548, 620, 692
XapI RAATTY 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.