FvH4_3g00445

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000455
Physical Location & Seq
Forward (+)
250785 .. 251905
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00445.t1

Sequence Viewer

Length: 630 bp
ATGGGGGAAAAAAAGGTGACGATAATGGTTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAAGAAGGTTAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCAGGTGATCATCAAGGTGGTCTGCTGCAGTCCTGAGAAGATCAGAGACAAGCTATGCTGCAAAGGAGGTGGCGCCATCAAGAGCATCGACATCAAAGAGCCCGAGAAGCCCAAAGAGAAACCAAAGGAGGAGAAGCCTAAAGCGAAACCAGAGGAGAAGAAGAAAGAGGAGCCTAAAAAGAAACCAATAGATGCTGACAAGCCTAAAGGGACACCGAAGGAGGCTGAAAGGCCTAAAGACGAACCCAAGAAGGCAGAGAAGCCGAAGGAAGAGCCGGTTCTGTTTCTGGTTCCGGCTTACCCTCCGGTGACGGTGAGCGAGTGTTGTATGGATTGTTACGGAGGGCATCCGGGTGGTCCCTGCCAAACTGGGTATGGTTACGGTGGGCCAGTGTATGATAGTTACGGCGGTGGGAGGAGCTATGCCACTAGTAGTTACTGCATGACACGCCCCGATTGTTTCGGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

210

Amino Acids

23.33

Weight (kDa)

8.79

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AciI CCGC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 116
AhlI ACTAGT 1 cut(s) 560
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 184, 552
AluI AGCT 2 cut(s) 184, 552
Alw26I GTCTC 2 cut(s) 99, 171
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 362, 518
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 2 cut(s) 206, 620
AspS9I GGNCC 3 cut(s) 40, 488, 518
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 5 cut(s) 28, 148, 451, 457, 608
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 2 cut(s) 40, 488
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 2 cut(s) 215, 629
BceAI ACGGC 1 cut(s) 553
BciT130I CCWGG 1 cut(s) 134
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 99, 171
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 2 cut(s) 157, 190
BlsI GCNGC 2 cut(s) 158, 191
Bme1390I CCNGG 2 cut(s) 134, 483
Bme18I GGWCC 2 cut(s) 40, 488
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 3 cut(s) 40, 488, 518
BmiI GGNNCC 4 cut(s) 205, 303, 423, 490
BmrFI CCNGG 2 cut(s) 134, 483
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 3 cut(s) 225, 313, 487
BmuI ACTGGG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 436
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 505, 521
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 505, 521
BseRI GAGGAG 4 cut(s) 275, 299, 314, 562
BseXI GCAGC 2 cut(s) 143, 176
BshFI GGCC 2 cut(s) 364, 520
BshNI GGYRCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 4 cut(s) 407, 425, 437, 482
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 2 cut(s) 355, 474
BsmAI GTCTC 2 cut(s) 99, 171
BsmFI GGGAC 2 cut(s) 355, 474
BsnI GGCC 2 cut(s) 364, 520
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 138, 171
BspACI CCGC 1 cut(s) 540
BspANI GGCC 2 cut(s) 364, 520
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 4 cut(s) 205, 303, 423, 490
BspMAI CTGCAG 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 2 cut(s) 505, 521
BssAI RCCGGY 1 cut(s) 406
BssMI GATC 2 cut(s) 138, 171
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 445, 515
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 478
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 620
BstKTI GATC 2 cut(s) 141, 174
BstMAI GTCTC 2 cut(s) 99, 171
BstMBI GATC 2 cut(s) 138, 171
BstMWI GCNNNNNNNGC 2 cut(s) 238, 579
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 132, 481
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 143, 176
BsuRI GGCC 2 cut(s) 364, 520
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 53, 528
Cac8I GCNNGC 1 cut(s) 616
CfoI GCGC 2 cut(s) 206, 620
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 40, 488, 518
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 2 cut(s) 574, 625
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 165
DinI GGCGCC 1 cut(s) 205
DpnI GATC 2 cut(s) 140, 173
DpnII GATC 2 cut(s) 138, 171
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 40, 488
Eco57I CTGAAG 2 cut(s) 29, 53
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
FaeI CATG 2 cut(s) 577, 628
FaiI YATR 7 cut(s) 187, 461, 507, 528, 555, 575, 626
FaqI GGGAC 2 cut(s) 355, 474
FatI CATG 2 cut(s) 573, 624
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 157, 190
FokI GGATG 1 cut(s) 465
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 157, 190
FspBI CTAG 1 cut(s) 561
GlaI GCGC 2 cut(s) 205, 619
GluI GCNGC 2 cut(s) 157, 190
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 2 cut(s) 364, 520
HapII CCGG 4 cut(s) 407, 425, 437, 482
HhaI GCGC 2 cut(s) 206, 620
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 577, 628
Hin6I GCGC 2 cut(s) 204, 618
HinP1I GCGC 2 cut(s) 204, 618
HpaII CCGG 4 cut(s) 407, 425, 437, 482
HphI GGTGA 5 cut(s) 28, 148, 451, 457, 608
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 33, 176
Hpy188III TCNNGA 2 cut(s) 164, 211
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 6 cut(s) 28, 53, 61, 343, 376, 391
HpyCH4III ACNGT 2 cut(s) 445, 515
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 159, 192, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 579
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 577, 628
HspAI GCGC 2 cut(s) 204, 618
KasI GGCGCC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 171
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 2 cut(s) 301, 549
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 3 cut(s) 225, 313, 487
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 6 cut(s) 16, 439, 467, 509, 533, 566
MalI GATC 2 cut(s) 140, 173
MboI GATC 2 cut(s) 138, 171
MboII GAAGA 6 cut(s) 136, 181, 301, 304, 413, 611
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 204
MnlI CCTC 9 cut(s) 105, 191, 253, 277, 292, 346, 444, 467, 540
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 2 cut(s) 146, 483
MspI CCGG 4 cut(s) 407, 425, 437, 482
MspR9I CCNGG 2 cut(s) 134, 483
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 238, 579
NarI GGCGCC 1 cut(s) 204
NciI CCSGG 1 cut(s) 483
NdeII GATC 2 cut(s) 138, 171
NlaIII CATG 2 cut(s) 577, 628
NlaIV GGNNCC 4 cut(s) 205, 303, 423, 490
NmuCI GTSAC 2 cut(s) 16, 439
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 396
Pfl23II CGTACG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 158, 191
PluTI GGCGCC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 205, 303, 423, 490
PspPI GGNCC 3 cut(s) 40, 488, 518
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 146, 483
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 157, 190
Sau3AI GATC 2 cut(s) 138, 171
Sau96I GGNCC 3 cut(s) 40, 488, 518
ScrFI CCNGG 2 cut(s) 134, 483
SduI GDGCHC 1 cut(s) 234
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 3 cut(s) 225, 313, 487
SfcI CTRYAG 1 cut(s) 157
SfoI GGCGCC 1 cut(s) 205
SinI GGWCC 2 cut(s) 40, 488
SmiMI CAYNNNNRTG 2 cut(s) 146, 483
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 1 cut(s) 540
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 1 cut(s) 561
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 2 cut(s) 132, 481
TaaI ACNGT 2 cut(s) 445, 515
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 53, 528
TseFI GTSAC 2 cut(s) 16, 439
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 439
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 53, 528
VpaK11BI GGWCC 2 cut(s) 40, 488
XapI RAATTY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.