Rw1G017090

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000455
Physical Location & Seq
Reverse (-)
37907619 .. 37908796
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017090.1

Sequence Viewer

Length: 678 bp
ATGGTCGTTCCGCCCCGTATTCAATCATTTCGCCCAGACTCTGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCTCAAGCCTCCTCCTCCGGATGACAAATCCAAAAAGGCCAAGGACGTGTCTAAAGAGAAACAAAAGGAAGACAAATCCAAAGACGACGAGAAGCCGAAGGATGAGCCGAAGCGGAAGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGTGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTGGGTTTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACCACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

225

Amino Acids

25.43

Weight (kDa)

8.7

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 448
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 6 cut(s) 11, 379, 446, 448, 591, 628
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 56, 80
AcyI GRCGYC 3 cut(s) 231, 415, 490
AfaI GTAC 2 cut(s) 143, 551
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 23
AhlI ACTAGT 1 cut(s) 611
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 3 cut(s) 159, 418, 493
AluBI AGCT 3 cut(s) 211, 268, 603
AluI AGCT 3 cut(s) 211, 268, 603
Alw26I GTCTC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 3 cut(s) 303, 452, 569
ApeKI GCWGC 2 cut(s) 183, 216
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 2 cut(s) 233, 668
AspS9I GGNCC 2 cut(s) 425, 500
AsuHPI GGTGA 2 cut(s) 175, 469
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 2 cut(s) 425, 500
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 170, 203
BccI CCATC 2 cut(s) 548, 677
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 3 cut(s) 161, 420, 495
BclI TGATCA 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 126
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 2 cut(s) 88, 184
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 2 cut(s) 184, 217
BlsI GCNGC 2 cut(s) 185, 218
Bme1390I CCNGG 3 cut(s) 161, 420, 495
Bme18I GGWCC 2 cut(s) 425, 500
BmeT110I CYCGRG 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 425, 500
BmiI GGNNCC 3 cut(s) 232, 427, 502
BmrFI CCNGG 3 cut(s) 161, 420, 495
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 254
BsaHI GRCGYC 3 cut(s) 231, 415, 490
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 306, 446
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bse118I RCCGGY 2 cut(s) 454, 571
Bse1I ACTGG 1 cut(s) 517
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 3 cut(s) 161, 420, 495
BseDI CCNNGG 2 cut(s) 306, 446
BseGI GGATG 2 cut(s) 292, 373
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 3 cut(s) 267, 270, 613
BseXI GCAGC 2 cut(s) 170, 203
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 3 cut(s) 305, 454, 571
BshNI GGYRCC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 3 cut(s) 284, 455, 572
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 3 cut(s) 218, 411, 486
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 3 cut(s) 218, 411, 486
BsnI GGCC 3 cut(s) 305, 454, 571
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 261
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 3 cut(s) 165, 198, 249
BspACI CCGC 6 cut(s) 11, 379, 446, 448, 591, 628
BspANI GGCC 3 cut(s) 305, 454, 571
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 3 cut(s) 232, 427, 502
BspMAI CTGCAG 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 126
BsrFI RCCGGY 2 cut(s) 454, 571
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 2 cut(s) 454, 571
BssECI CCNNGG 2 cut(s) 306, 446
BssMI GATC 3 cut(s) 165, 198, 249
BssNI GRCGYC 3 cut(s) 231, 415, 490
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 3 cut(s) 161, 420, 495
Bst4CI ACNGT 2 cut(s) 527, 549
BstACI GRCGYC 3 cut(s) 231, 415, 490
BstC8I GCNNGC 1 cut(s) 664
BstDSI CCRYGG 1 cut(s) 446
BstF5I GGATG 2 cut(s) 292, 373
BstFNI CGCG 1 cut(s) 448
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 2 cut(s) 233, 668
BstKTI GATC 3 cut(s) 168, 201, 252
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 3 cut(s) 165, 198, 249
BstMWI GCNNNNNNNGC 3 cut(s) 265, 438, 627
BstNI CCWGG 3 cut(s) 161, 420, 495
BstSCI CCNGG 3 cut(s) 159, 418, 493
BstSFI CTRYAG 2 cut(s) 88, 184
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 170, 203
BstV2I GAAGAC 1 cut(s) 342
BsuRI GGCC 3 cut(s) 305, 454, 571
BtgI CCRYGG 1 cut(s) 446
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 292, 373
BtsIMutI CAGTG 2 cut(s) 80, 649
Cac8I GCNNGC 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 2 cut(s) 233, 668
Cfr10I RCCGGY 2 cut(s) 454, 571
Cfr13I GGNCC 2 cut(s) 425, 500
Cfr42I CCGCGG 1 cut(s) 449
CseI GACGC 2 cut(s) 404, 479
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 2 cut(s) 142, 550
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 1 cut(s) 673
CviQI GTAC 2 cut(s) 142, 550
DinI GGCGCC 1 cut(s) 232
DpnI GATC 3 cut(s) 167, 200, 251
DpnII GATC 3 cut(s) 165, 198, 249
EaeI YGGCCR 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 425, 500
Eco57I CTGAAG 2 cut(s) 56, 80
Eco88I CYCGRG 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 159, 418, 493
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 261
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 676
FaqI GGGAC 3 cut(s) 218, 411, 486
FatI CATG 1 cut(s) 672
FauI CCCGC 1 cut(s) 635
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 184, 217
FokI GGATG 2 cut(s) 299, 380
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 184, 217
FspBI CTAG 1 cut(s) 612
GlaI GCGC 2 cut(s) 232, 667
GluI GCNGC 2 cut(s) 184, 217
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 3 cut(s) 305, 454, 571
HapII CCGG 3 cut(s) 284, 455, 572
HgaI GACGC 2 cut(s) 404, 479
HhaI GCGC 2 cut(s) 233, 668
Hin1I GRCGYC 3 cut(s) 231, 415, 490
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 2 cut(s) 231, 666
HinP1I GCGC 2 cut(s) 231, 666
HinfI GANTC 2 cut(s) 38, 55
HpaII CCGG 3 cut(s) 284, 455, 572
HphI GGTGA 2 cut(s) 175, 469
Hpy166II GTNNAC 2 cut(s) 67, 460
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 4 cut(s) 100, 191, 247, 284
Hpy8I GTNNAC 2 cut(s) 67, 460
Hpy99I CGWCG 2 cut(s) 149, 356
HpyAV CCTTC 6 cut(s) 55, 80, 88, 358, 479, 561
HpyCH4III ACNGT 2 cut(s) 527, 549
HpyCH4IV ACGT 2 cut(s) 140, 312
HpyCH4V TGCA 2 cut(s) 186, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 438, 627
HpySE526I ACGT 2 cut(s) 140, 312
Hsp92I GRCGYC 3 cut(s) 231, 415, 490
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 2 cut(s) 231, 666
KasI GGCGCC 1 cut(s) 230
Kpn2I TCCGGA 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 165
KspI CCGCGG 1 cut(s) 449
Kzo9I GATC 3 cut(s) 165, 198, 249
LmnI GCTCC 1 cut(s) 600
Lsp1109I GCAGC 2 cut(s) 170, 203
LweI GCATC 1 cut(s) 252
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 1 cut(s) 612
MaeII ACGT 2 cut(s) 140, 312
MaeIII GTNAC 7 cut(s) 43, 404, 479, 521, 584, 614, 622
MalI GATC 3 cut(s) 167, 200, 251
MboI GATC 3 cut(s) 165, 198, 249
MboII GAAGA 4 cut(s) 163, 347, 394, 659
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 1 cut(s) 116
Mly113I GGCGCC 1 cut(s) 231
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 8 cut(s) 132, 218, 285, 288, 291, 404, 453, 591
MroI TCCGGA 1 cut(s) 283
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 448
MspI CCGG 3 cut(s) 284, 455, 572
MspR9I CCNGG 3 cut(s) 161, 420, 495
MvaI CCWGG 3 cut(s) 161, 420, 495
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 3 cut(s) 265, 438, 627
NarI GGCGCC 1 cut(s) 231
NdeII GATC 3 cut(s) 165, 198, 249
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 3 cut(s) 232, 427, 502
NmuCI GTSAC 2 cut(s) 43, 622
PfeI GAWTC 1 cut(s) 55
Pfl23II CGTACG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 185, 218
PleI GAGTC 1 cut(s) 32
PluTI GGCGCC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 159, 418, 493
PspGI CCWGG 3 cut(s) 159, 418, 493
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 232, 427, 502
PspPI GGNCC 2 cut(s) 425, 500
PstI CTGCAG 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 143, 551
RsaNI GTAC 2 cut(s) 142, 550
RseI CAYNNNNRTG 1 cut(s) 173
SacII CCGCGG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 184, 217
Sau3AI GATC 3 cut(s) 165, 198, 249
Sau96I GGNCC 2 cut(s) 425, 500
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 161, 420, 495
SduI GDGCHC 1 cut(s) 261
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 2 cut(s) 88, 184
SfoI GGCGCC 1 cut(s) 232
Sfr303I CCGCGG 1 cut(s) 449
SgrBI CCGCGG 1 cut(s) 449
SinI GGWCC 2 cut(s) 425, 500
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 1 cut(s) 116
SsiI CCGC 6 cut(s) 11, 379, 446, 448, 591, 628
SspDI GGCGCC 1 cut(s) 230
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 3 cut(s) 159, 418, 493
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 527, 549
TaiI ACGT 2 cut(s) 143, 315
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 116
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 80, 649
TseFI GTSAC 2 cut(s) 43, 622
TseI GCWGC 2 cut(s) 183, 216
Tsp45I GTSAC 2 cut(s) 43, 622
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 2 cut(s) 80, 649
VpaK11BI GGWCC 2 cut(s) 425, 500
XapI RAATTY 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.