Rh7CG028600

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000455
Physical Location & Seq
Reverse (-)
2059580 .. 2061148
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG028600.1

Sequence Viewer

Length: 603 bp
ATGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCTGTCCCGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTACGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCTTCTCCGGCTCCGAAACCTGCTCCGGCTCCGGCTCCGAAACCTGCTCCCTCTCCGGCTCCGAAACCTGCTCCCGCTCCTGCTCCTAAACCTGCTCCGAAACCGACTCCGGCTCCGGCGCCGGTACCTGCTTGCCCTCGGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTACGGTGCTCCGGCTCCGGTGCCGGTTCCTCCTTGCCGTCCGCGGCCGGTGAACCCTTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACAGATGGCCTGCCCCTTACACACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGTTACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGGGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

200

Amino Acids

21.27

Weight (kDa)

8.68

Isoelectric Point (pI)

78.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 5 cut(s) 166, 190, 214, 238, 274
Acc65I GGTACC 1 cut(s) 262
AccB1I GGYRCC 4 cut(s) 92, 256, 262, 364
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 1 cut(s) 388
AciI CCGC 6 cut(s) 213, 280, 386, 388, 528, 553
AcoI YGGCCR 2 cut(s) 281, 389
AcyI GRCGYC 4 cut(s) 93, 257, 319, 427
AfaI GTAC 4 cut(s) 5, 264, 347, 488
AjnI CCWGG 2 cut(s) 21, 430
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 281, 389, 467, 506
ApeKI GCWGC 2 cut(s) 45, 78
Asp718I GGTACC 1 cut(s) 262
AspLEI GCGC 3 cut(s) 95, 259, 593
AspS9I GGNCC 2 cut(s) 329, 437
AsuHPI GGTGA 3 cut(s) 37, 298, 406
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 329, 437
BanI GGYRCC 4 cut(s) 92, 256, 262, 364
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 32, 65
BccI CCATC 3 cut(s) 459, 485, 602
BceAI ACGGC 2 cut(s) 366, 541
BciT130I CCWGG 2 cut(s) 23, 432
BclI TGATCA 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 96, 260
BfuAI ACCTGC 5 cut(s) 166, 190, 214, 238, 274
BisI GCNGC 4 cut(s) 46, 79, 281, 389
BlsI GCNGC 4 cut(s) 47, 80, 282, 390
Bme1390I CCNGG 2 cut(s) 23, 432
Bme18I GGWCC 2 cut(s) 329, 437
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 329, 437
BmrFI CCNGG 2 cut(s) 23, 432
BmrI ACTGGG 2 cut(s) 351, 459
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 2 cut(s) 351, 459
BsaHI GRCGYC 4 cut(s) 93, 257, 319, 427
BsaJI CCNNGG 3 cut(s) 275, 386, 583
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bse118I RCCGGY 5 cut(s) 259, 283, 367, 391, 508
Bse1I ACTGG 2 cut(s) 346, 454
BseBI CCWGG 2 cut(s) 23, 432
BseDI CCNNGG 3 cut(s) 275, 386, 583
BseNI ACTGG 2 cut(s) 346, 454
BseRI GAGGAG 1 cut(s) 550
BseX3I CGGCCG 2 cut(s) 281, 389
BseXI GCAGC 2 cut(s) 32, 65
Bsh1236I CGCG 1 cut(s) 388
Bsh1285I CGRYCG 2 cut(s) 284, 392
BshFI GGCC 4 cut(s) 283, 391, 469, 508
BshNI GGYRCC 4 cut(s) 92, 256, 262, 364
BsiEI CGRYCG 2 cut(s) 284, 392
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 122
BslFI GGGAC 4 cut(s) 36, 80, 315, 423
BsmFI GGGAC 4 cut(s) 36, 80, 315, 423
BsnI GGCC 4 cut(s) 283, 391, 469, 508
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 123, 355
Bsp143I GATC 3 cut(s) 27, 60, 111
BspACI CCGC 6 cut(s) 213, 280, 386, 388, 528, 553
BspANI GGCC 4 cut(s) 283, 391, 469, 508
BspFNI CGCG 1 cut(s) 388
BspMI ACCTGC 5 cut(s) 166, 190, 214, 238, 274
BspT107I GGYRCC 4 cut(s) 92, 256, 262, 364
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 5 cut(s) 259, 283, 367, 391, 508
BsrI ACTGG 2 cut(s) 346, 454
BssAI RCCGGY 5 cut(s) 259, 283, 367, 391, 508
BssECI CCNNGG 3 cut(s) 275, 386, 583
BssMI GATC 3 cut(s) 27, 60, 111
BssNI GRCGYC 4 cut(s) 93, 257, 319, 427
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 2 cut(s) 23, 432
Bst4CI ACNGT 2 cut(s) 350, 486
BstACI GRCGYC 4 cut(s) 93, 257, 319, 427
BstC8I GCNNGC 2 cut(s) 271, 471
BstDSI CCRYGG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 388
BstH2I RGCGCY 2 cut(s) 96, 260
BstHHI GCGC 3 cut(s) 95, 259, 593
BstKTI GATC 3 cut(s) 30, 63, 114
BstMBI GATC 3 cut(s) 27, 60, 111
BstMCI CGRYCG 2 cut(s) 284, 392
BstMWI GCNNNNNNNGC 2 cut(s) 127, 552
BstNI CCWGG 2 cut(s) 23, 432
BstSCI CCNGG 2 cut(s) 21, 430
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 32, 65
BstZI CGGCCG 2 cut(s) 281, 389
BsuRI GGCC 4 cut(s) 283, 391, 469, 508
BtgI CCRYGG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 574
BveI ACCTGC 5 cut(s) 166, 190, 214, 238, 274
Cac8I GCNNGC 2 cut(s) 271, 471
CfoI GCGC 3 cut(s) 95, 259, 593
Cfr10I RCCGGY 5 cut(s) 259, 283, 367, 391, 508
Cfr13I GGNCC 2 cut(s) 329, 437
Cfr42I CCGCGG 1 cut(s) 389
CseI GACGC 2 cut(s) 308, 416
CsiI ACCWGGT 1 cut(s) 21
Csp6I GTAC 4 cut(s) 4, 263, 346, 487
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 2 cut(s) 323, 598
CviQI GTAC 4 cut(s) 4, 263, 346, 487
DinI GGCGCC 2 cut(s) 94, 258
DpnI GATC 3 cut(s) 29, 62, 113
DpnII GATC 3 cut(s) 27, 60, 111
EaeI YGGCCR 2 cut(s) 281, 389
EagI CGGCCG 2 cut(s) 281, 389
EclXI CGGCCG 2 cut(s) 281, 389
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 329, 437
Eco52I CGGCCG 2 cut(s) 281, 389
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 21, 430
EcoT14I CCWWGG 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 123
EgeI GGCGCC 2 cut(s) 94, 258
EheI GGCGCC 2 cut(s) 94, 258
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 2 cut(s) 326, 601
FaiI YATR 8 cut(s) 76, 302, 324, 410, 456, 501, 516, 599
FaqI GGGAC 4 cut(s) 36, 80, 315, 423
FatI CATG 2 cut(s) 322, 597
FauI CCCGC 2 cut(s) 220, 560
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 46, 79, 281, 389
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 46, 79, 281, 389
GlaI GCGC 3 cut(s) 94, 258, 592
GluI GCNGC 4 cut(s) 46, 79, 281, 389
HaeII RGCGCY 2 cut(s) 96, 260
HaeIII GGCC 4 cut(s) 283, 391, 469, 508
HgaI GACGC 2 cut(s) 308, 416
HhaI GCGC 3 cut(s) 95, 259, 593
Hin1I GRCGYC 4 cut(s) 93, 257, 319, 427
Hin1II CATG 2 cut(s) 326, 601
Hin6I GCGC 3 cut(s) 93, 257, 591
HinP1I GCGC 3 cut(s) 93, 257, 591
HinfI GANTC 1 cut(s) 244
HphI GGTGA 3 cut(s) 37, 298, 406
Hpy166II GTNNAC 2 cut(s) 289, 397
Hpy188I TCNGA 4 cut(s) 153, 177, 201, 237
Hpy188III TCNNGA 2 cut(s) 53, 109
Hpy8I GTNNAC 2 cut(s) 289, 397
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 150, 416, 498
HpyCH4III ACNGT 2 cut(s) 350, 486
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 552
Hsp92I GRCGYC 4 cut(s) 93, 257, 319, 427
Hsp92II CATG 2 cut(s) 326, 601
HspAI GCGC 3 cut(s) 93, 257, 591
KasI GGCGCC 2 cut(s) 92, 256
KpnI GGTACC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 27
KspI CCGCGG 1 cut(s) 389
Kzo9I GATC 3 cut(s) 27, 60, 111
Lsp1109I GCAGC 2 cut(s) 32, 65
LweI GCATC 1 cut(s) 114
MabI ACCWGGT 1 cut(s) 21
MaeIII GTNAC 6 cut(s) 308, 416, 458, 521, 539, 547
MalI GATC 3 cut(s) 29, 62, 113
MbiI CCGCTC 1 cut(s) 215
MboI GATC 3 cut(s) 27, 60, 111
MboII GAAGA 2 cut(s) 25, 584
MhlI GDGCHC 2 cut(s) 123, 355
Mly113I GGCGCC 2 cut(s) 93, 257
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 7 cut(s) 80, 147, 199, 285, 308, 384, 528
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 388
MspR9I CCNGG 2 cut(s) 23, 432
MvaI CCWGG 2 cut(s) 23, 432
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 127, 552
NarI GGCGCC 2 cut(s) 93, 257
NdeII GATC 3 cut(s) 27, 60, 111
NlaIII CATG 2 cut(s) 326, 601
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 547
PkrI GCNGC 4 cut(s) 47, 80, 282, 390
PleI GAGTC 1 cut(s) 238
PluTI GGCGCC 2 cut(s) 96, 260
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 21, 430
PspGI CCWGG 2 cut(s) 21, 430
PspPI GGNCC 2 cut(s) 329, 437
RsaI GTAC 4 cut(s) 5, 264, 347, 488
RsaNI GTAC 4 cut(s) 4, 263, 346, 487
RseI CAYNNNNRTG 1 cut(s) 35
SacII CCGCGG 1 cut(s) 389
SatI GCNGC 4 cut(s) 46, 79, 281, 389
Sau3AI GATC 3 cut(s) 27, 60, 111
Sau96I GGNCC 2 cut(s) 329, 437
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 23, 432
SduI GDGCHC 2 cut(s) 123, 355
SetI ASST 8 cut(s) 27, 75, 91, 160, 184, 208, 232, 268
SexAI ACCWGGT 1 cut(s) 21
SfaNI GCATC 1 cut(s) 114
SfoI GGCGCC 2 cut(s) 94, 258
Sfr303I CCGCGG 1 cut(s) 389
SgrBI CCGCGG 1 cut(s) 389
SinI GGWCC 2 cut(s) 329, 437
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 6 cut(s) 213, 280, 386, 388, 528, 553
SspDI GGCGCC 2 cut(s) 92, 256
StyD4I CCNGG 2 cut(s) 21, 430
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 2 cut(s) 350, 486
TaqI TCGA 1 cut(s) 108
TauI GCSGC 2 cut(s) 283, 391
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 2 cut(s) 45, 78
Tsp45I GTSAC 1 cut(s) 547
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 574
VpaK11BI GGWCC 2 cut(s) 329, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.