Rw1G007400

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000455
Physical Location & Seq
Forward (+)
15617852 .. 15619046
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007400.1

Sequence Viewer

Length: 789 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACTGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGTAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCTCAAGCCTCCTTCTACGGATGACAAATCCAAACAAACACTAGCTTCAGGTAAAACCAAAGATGCCAAGGACGTGTCTAAAGAGAAACAAAAGGAAGATAAACCCGAAGACGGCGAGAAGCCGAAGGATGAGTCGAAGCAGAAGCGTGCTCCGGTTACTGCTTGTTCTCCGCGGCCGGTGAACCCGTGCTGTATGGATTGTTATGGAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGCGGCAGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCATCCGCGGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACAGAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACATGCAGTACGATGGCTACTATGGAAGGCCGATCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGACTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

262

Amino Acids

29.42

Weight (kDa)

8.82

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 481
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 39
AccII CGCG 3 cut(s) 412, 484, 559
AcoI YGGCCR 2 cut(s) 413, 563
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 3 cut(s) 29, 53, 270
AcyI GRCGYC 4 cut(s) 204, 451, 526, 601
AfaI GTAC 2 cut(s) 116, 662
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 312
AhlI ACTAGT 1 cut(s) 722
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 4 cut(s) 132, 454, 529, 604
AluBI AGCT 4 cut(s) 184, 241, 284, 714
AluI AGCT 4 cut(s) 184, 241, 284, 714
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 3 cut(s) 413, 563, 680
ApeKI GCWGC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 2 cut(s) 206, 779
AspS9I GGNCC 3 cut(s) 461, 536, 611
AsuHPI GGTGA 5 cut(s) 28, 148, 430, 505, 580
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 3 cut(s) 461, 536, 611
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 176
BccI CCATC 3 cut(s) 561, 659, 788
BceAI ACGGC 2 cut(s) 367, 715
BciT130I CCWGG 4 cut(s) 134, 456, 531, 606
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 722
BfaI CTAG 2 cut(s) 281, 723
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 6 cut(s) 190, 413, 485, 488, 560, 563
BlsI GCNGC 6 cut(s) 191, 414, 486, 489, 561, 564
Bme1390I CCNGG 4 cut(s) 134, 456, 531, 606
Bme18I GGWCC 3 cut(s) 461, 536, 611
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 3 cut(s) 461, 536, 611
BmiI GGNNCC 4 cut(s) 205, 463, 538, 613
BmrFI CCNGG 4 cut(s) 134, 456, 531, 606
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 2 cut(s) 225, 292
BmuI ACTGGG 1 cut(s) 633
BpiI GAAGAC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 227
BsaHI GRCGYC 4 cut(s) 204, 451, 526, 601
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 306, 410, 482, 557
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse118I RCCGGY 2 cut(s) 415, 565
Bse1I ACTGG 2 cut(s) 68, 628
BseBI CCWGG 4 cut(s) 134, 456, 531, 606
BseDI CCNNGG 4 cut(s) 306, 410, 482, 557
BseGI GGATG 3 cut(s) 265, 373, 553
BseLI CCNNNNNNNGG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 68, 628
BseRI GAGGAG 1 cut(s) 724
BseX3I CGGCCG 2 cut(s) 413, 563
BseXI GCAGC 1 cut(s) 176
Bsh1236I CGCG 3 cut(s) 412, 484, 559
Bsh1285I CGRYCG 2 cut(s) 416, 566
BshFI GGCC 3 cut(s) 415, 565, 682
BshNI GGYRCC 1 cut(s) 203
BsiEI CGRYCG 2 cut(s) 416, 566
BsiHKAI GWGCWC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 392, 416, 566
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 4 cut(s) 191, 447, 522, 597
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 4 cut(s) 191, 447, 522, 597
BsnI GGCC 3 cut(s) 415, 565, 682
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 234, 391
Bsp143I GATC 4 cut(s) 138, 171, 222, 684
BspANI GGCC 3 cut(s) 415, 565, 682
BspFNI CGCG 3 cut(s) 412, 484, 559
BspLI GGNNCC 4 cut(s) 205, 463, 538, 613
BspMI ACCTGC 1 cut(s) 481
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 2 cut(s) 415, 565
BsrI ACTGG 2 cut(s) 68, 628
BssAI RCCGGY 2 cut(s) 415, 565
BssECI CCNNGG 4 cut(s) 306, 410, 482, 557
BssMI GATC 4 cut(s) 138, 171, 222, 684
BssNI GRCGYC 4 cut(s) 204, 451, 526, 601
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 4 cut(s) 134, 456, 531, 606
Bst4CI ACNGT 2 cut(s) 638, 749
BstACI GRCGYC 4 cut(s) 204, 451, 526, 601
BstC8I GCNNGC 3 cut(s) 387, 645, 775
BstDSI CCRYGG 3 cut(s) 410, 482, 557
BstF5I GGATG 3 cut(s) 265, 373, 553
BstFNI CGCG 3 cut(s) 412, 484, 559
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 779
BstKTI GATC 4 cut(s) 141, 174, 225, 687
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 4 cut(s) 138, 171, 222, 684
BstMCI CGRYCG 2 cut(s) 416, 566
BstMWI GCNNNNNNNGC 4 cut(s) 238, 474, 549, 738
BstNI CCWGG 4 cut(s) 134, 456, 531, 606
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 4 cut(s) 132, 454, 529, 604
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 3 cut(s) 412, 484, 559
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 354
BstZI CGGCCG 2 cut(s) 413, 563
BsuRI GGCC 3 cut(s) 415, 565, 682
BtgI CCRYGG 3 cut(s) 410, 482, 557
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 3 cut(s) 265, 373, 553
BtsIMutI CAGTG 2 cut(s) 53, 760
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 3 cut(s) 387, 645, 775
CfoI GCGC 2 cut(s) 206, 779
Cfr10I RCCGGY 2 cut(s) 415, 565
Cfr13I GGNCC 3 cut(s) 461, 536, 611
Cfr42I CCGCGG 3 cut(s) 413, 485, 560
CseI GACGC 3 cut(s) 440, 515, 590
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 115, 661
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 2 cut(s) 655, 784
CviQI GTAC 2 cut(s) 115, 661
DinI GGCGCC 1 cut(s) 205
DpnI GATC 4 cut(s) 140, 173, 224, 686
DpnII GATC 4 cut(s) 138, 171, 222, 684
EaeI YGGCCR 2 cut(s) 413, 563
EagI CGGCCG 2 cut(s) 413, 563
EclXI CGGCCG 2 cut(s) 413, 563
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 461, 536, 611
Eco52I CGGCCG 2 cut(s) 413, 563
Eco57I CTGAAG 3 cut(s) 29, 53, 270
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 132, 454, 529, 604
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 658, 787
FaqI GGGAC 4 cut(s) 191, 447, 522, 597
FatI CATG 2 cut(s) 654, 783
FauI CCCGC 1 cut(s) 746
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 6 cut(s) 190, 413, 485, 488, 560, 563
FokI GGATG 3 cut(s) 272, 380, 540
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 6 cut(s) 190, 413, 485, 488, 560, 563
FspBI CTAG 2 cut(s) 281, 723
GlaI GCGC 2 cut(s) 205, 778
GluI GCNGC 6 cut(s) 190, 413, 485, 488, 560, 563
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 3 cut(s) 415, 565, 682
HapII CCGG 3 cut(s) 392, 416, 566
HgaI GACGC 3 cut(s) 440, 515, 590
HhaI GCGC 2 cut(s) 206, 779
Hin1I GRCGYC 4 cut(s) 204, 451, 526, 601
Hin1II CATG 2 cut(s) 658, 787
Hin6I GCGC 2 cut(s) 204, 777
HinP1I GCGC 2 cut(s) 204, 777
HinfI GANTC 2 cut(s) 28, 371
HpaII CCGG 3 cut(s) 392, 416, 566
HphI GGTGA 5 cut(s) 28, 148, 430, 505, 580
Hpy166II GTNNAC 4 cut(s) 40, 421, 496, 571
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy8I GTNNAC 4 cut(s) 40, 421, 496, 571
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 8 cut(s) 7, 28, 53, 61, 261, 358, 515, 672
HpyCH4III ACNGT 2 cut(s) 638, 749
HpyCH4IV ACGT 2 cut(s) 113, 312
HpyCH4V TGCA 2 cut(s) 192, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 474, 549, 738
HpySE526I ACGT 2 cut(s) 113, 312
Hsp92I GRCGYC 4 cut(s) 204, 451, 526, 601
Hsp92II CATG 2 cut(s) 658, 787
HspAI GCGC 2 cut(s) 204, 777
KasI GGCGCC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 3 cut(s) 413, 485, 560
Kzo9I GATC 4 cut(s) 138, 171, 222, 684
LmnI GCTCC 2 cut(s) 394, 711
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 2 cut(s) 225, 292
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 2 cut(s) 281, 723
MaeII ACGT 2 cut(s) 113, 312
MaeIII GTNAC 8 cut(s) 16, 394, 515, 590, 632, 695, 725, 733
MalI GATC 4 cut(s) 140, 173, 224, 686
MboI GATC 4 cut(s) 138, 171, 222, 684
MboII GAAGA 4 cut(s) 136, 347, 359, 770
MhlI GDGCHC 2 cut(s) 234, 391
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 204
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 7 cut(s) 105, 191, 258, 440, 489, 590, 702
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 3 cut(s) 412, 484, 559
MspI CCGG 3 cut(s) 392, 416, 566
MspR9I CCNGG 4 cut(s) 134, 456, 531, 606
MvaI CCWGG 4 cut(s) 134, 456, 531, 606
MvnI CGCG 3 cut(s) 412, 484, 559
MwoI GCNNNNNNNGC 4 cut(s) 238, 474, 549, 738
NarI GGCGCC 1 cut(s) 204
NdeII GATC 4 cut(s) 138, 171, 222, 684
NlaIII CATG 2 cut(s) 658, 787
NlaIV GGNNCC 4 cut(s) 205, 463, 538, 613
NmuCI GTSAC 2 cut(s) 16, 733
NspI RCATGY 1 cut(s) 658
PaqCI CACCTGC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 28
Pfl23II CGTACG 1 cut(s) 114
PkrI GCNGC 6 cut(s) 191, 414, 486, 489, 561, 564
PleI GAGTC 1 cut(s) 379
PluTI GGCGCC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 4 cut(s) 132, 454, 529, 604
PspGI CCWGG 4 cut(s) 132, 454, 529, 604
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 205, 463, 538, 613
PspPI GGNCC 3 cut(s) 461, 536, 611
RsaI GTAC 2 cut(s) 116, 662
RsaNI GTAC 2 cut(s) 115, 661
RseI CAYNNNNRTG 1 cut(s) 146
SacII CCGCGG 3 cut(s) 413, 485, 560
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 6 cut(s) 190, 413, 485, 488, 560, 563
Sau3AI GATC 4 cut(s) 138, 171, 222, 684
Sau96I GGNCC 3 cut(s) 461, 536, 611
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 4 cut(s) 134, 456, 531, 606
SduI GDGCHC 2 cut(s) 234, 391
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 2 cut(s) 225, 292
SfcI CTRYAG 1 cut(s) 157
SfoI GGCGCC 1 cut(s) 205
Sfr303I CCGCGG 3 cut(s) 413, 485, 560
SgrBI CCGCGG 3 cut(s) 413, 485, 560
SinI GGWCC 3 cut(s) 461, 536, 611
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SpeI ACTAGT 1 cut(s) 722
Sse9I AATT 1 cut(s) 89
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 2 cut(s) 281, 723
StyD4I CCNGG 4 cut(s) 132, 454, 529, 604
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 638, 749
TaiI ACGT 2 cut(s) 116, 315
TaqI TCGA 2 cut(s) 219, 374
TasI AATT 1 cut(s) 89
TauI GCSGC 5 cut(s) 415, 487, 490, 562, 565
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 53, 760
TseFI GTSAC 2 cut(s) 16, 733
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 2 cut(s) 16, 733
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 53, 760
VpaK11BI GGWCC 3 cut(s) 461, 536, 611
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 2 cut(s) 281, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.