FvH4_3g00443

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000455
Physical Location & Seq
Forward (+)
244595 .. 245814
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00443.t1

Sequence Viewer

Length: 717 bp
ATGGGGGAAAAAAAGGTGACGATAATGGTTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAAGAAGGTTAAGAAAGTTCTGTGTAAATTCCCTCAAATACGAGACCAGGCGTACGACGAGAAGAACAACCAGGTGATCATCAAGGTGGTCTGCTGCAGTCCTGAGAAGATCAGAGACAAGCTATGCTGCAAAGGAGGTGGCGCCATCAAGAGCATCGACATCTTGCCGCCCGAGAAGCCCAAGCCCAAGGAGCCTGAGAAGCCTAAAGAGAAACCAAAGGAGGCTGAGAAGCCTAAAGAGAAACCAAAGGAGGCTGAGAAACCTAAAGAGGCTGAAAAGCCTAAAGAGAAACCAAAAGAGGCTGAGAAACCAAAGGAGGCTGAGAAACCTAAAGAGGCTGAAAAACCTAAAGAGAAACCCAAGGACGCAGAGAAGCCGAAGCCTTCTCAGCCTACTCAGCCTCCGGTTACTGCTTACCCTCCGGTGACGGTGAACGCGTGTTGTATGGAATGTTACGGAGGGCATCCGGGTGGTCCCTGCCAAACTGGGTACGGTTACGGTGGGGCAGCACCATACATACAGTACGACGGCTACTATGGAAGGCCAGTGTACGATAGTTACGGCGGTGGGAGGAGCTACGCCACTAGTAGTTACTGCGTGACACGCCCTGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

239

Amino Acids

26.51

Weight (kDa)

8.88

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccII CGCG 1 cut(s) 500
AciI CCGC 2 cut(s) 230, 627
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 4 cut(s) 116, 554, 587, 614
AflIII ACRYGT 1 cut(s) 498
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 2 cut(s) 108, 132
AluBI AGCT 2 cut(s) 184, 639
AluI AGCT 2 cut(s) 184, 639
Alw26I GTCTC 2 cut(s) 99, 171
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 3 cut(s) 156, 189, 569
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 2 cut(s) 206, 707
AspS9I GGNCC 2 cut(s) 40, 536
AsuC2I CCSGG 1 cut(s) 531
AsuHPI GGTGA 4 cut(s) 28, 148, 499, 505
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 2 cut(s) 40, 536
BanI GGYRCC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 143, 176, 581
BccI CCATC 2 cut(s) 215, 716
BceAI ACGGC 2 cut(s) 607, 640
BciT130I CCWGG 2 cut(s) 110, 134
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 99, 171
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 4 cut(s) 157, 190, 230, 570
BlsI GCNGC 4 cut(s) 158, 191, 231, 571
Bme1390I CCNGG 3 cut(s) 110, 134, 531
Bme18I GGWCC 2 cut(s) 40, 536
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 40, 536
BmiI GGNNCC 3 cut(s) 205, 255, 538
BmrFI CCNGG 3 cut(s) 110, 134, 531
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 2 cut(s) 225, 535
BmuI ACTGGG 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 249, 423
BsaWI WCCGGW 2 cut(s) 466, 484
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bse1I ACTGG 2 cut(s) 553, 608
BseBI CCWGG 2 cut(s) 110, 134
BseDI CCNNGG 2 cut(s) 249, 423
BseGI GGATG 1 cut(s) 526
BseMII CTCAG 8 cut(s) 156, 249, 279, 309, 357, 375, 464, 473
BseNI ACTGG 2 cut(s) 553, 608
BseRI GAGGAG 1 cut(s) 649
BseXI GCAGC 3 cut(s) 143, 176, 581
Bsh1236I CGCG 1 cut(s) 500
BshFI GGCC 1 cut(s) 607
BshNI GGYRCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 467, 485, 530
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 522
BsmAI GTCTC 2 cut(s) 99, 171
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 1 cut(s) 607
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp143I GATC 2 cut(s) 138, 171
BspACI CCGC 2 cut(s) 230, 627
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 8 cut(s) 157, 250, 280, 310, 358, 376, 463, 472
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 3 cut(s) 205, 255, 538
BspMAI CTGCAG 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 99
BsrI ACTGG 2 cut(s) 553, 608
BssECI CCNNGG 2 cut(s) 249, 423
BssMI GATC 2 cut(s) 138, 171
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 2 cut(s) 249, 423
Bst2UI CCWGG 2 cut(s) 110, 134
Bst4CI ACNGT 4 cut(s) 493, 557, 563, 585
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 8 cut(s) 165, 258, 288, 318, 366, 384, 450, 459
BstF5I GGATG 1 cut(s) 526
BstFNI CGCG 1 cut(s) 500
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 707
BstKTI GATC 2 cut(s) 141, 174
BstMAI GTCTC 2 cut(s) 99, 171
BstMBI GATC 2 cut(s) 138, 171
BstMWI GCNNNNNNNGC 6 cut(s) 238, 253, 262, 451, 460, 666
BstNI CCWGG 2 cut(s) 110, 134
BstSCI CCNGG 3 cut(s) 108, 132, 529
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 3 cut(s) 143, 176, 581
BsuRI GGCC 1 cut(s) 607
BtsCI GGATG 1 cut(s) 526
BtsIMutI CAGTG 3 cut(s) 53, 615, 688
Cac8I GCNNGC 1 cut(s) 703
CfoI GCGC 2 cut(s) 206, 707
Cfr13I GGNCC 2 cut(s) 40, 536
CseI GACGC 1 cut(s) 437
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 4 cut(s) 115, 553, 586, 613
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 712
CviQI GTAC 4 cut(s) 115, 553, 586, 613
DdeI CTNAG 8 cut(s) 165, 258, 288, 318, 366, 384, 450, 459
DinI GGCGCC 1 cut(s) 205
DpnI GATC 2 cut(s) 140, 173
DpnII GATC 2 cut(s) 138, 171
Eco130I CCWWGG 2 cut(s) 249, 423
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 40, 536
Eco57I CTGAAG 2 cut(s) 29, 53
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 108, 132
EcoT14I CCWWGG 2 cut(s) 249, 423
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
ErhI CCWWGG 2 cut(s) 249, 423
FaeI CATG 1 cut(s) 715
FaiI YATR 6 cut(s) 187, 509, 577, 581, 600, 713
FaqI GGGAC 1 cut(s) 522
FatI CATG 1 cut(s) 711
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 157, 190, 230, 570
FokI GGATG 1 cut(s) 513
Fsp4HI GCNGC 4 cut(s) 157, 190, 230, 570
FspBI CTAG 1 cut(s) 648
GlaI GCGC 2 cut(s) 205, 706
GluI GCNGC 4 cut(s) 157, 190, 230, 570
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 1 cut(s) 607
HapII CCGG 3 cut(s) 467, 485, 530
HgaI GACGC 1 cut(s) 437
HhaI GCGC 2 cut(s) 206, 707
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 715
Hin6I GCGC 2 cut(s) 204, 705
HinP1I GCGC 2 cut(s) 204, 705
HpaII CCGG 3 cut(s) 467, 485, 530
HphI GGTGA 4 cut(s) 28, 148, 499, 505
Hpy166II GTNNAC 3 cut(s) 40, 496, 613
Hpy188I TCNGA 2 cut(s) 33, 176
Hpy188III TCNNGA 2 cut(s) 164, 211
Hpy8I GTNNAC 3 cut(s) 40, 496, 613
Hpy99I CGWCG 2 cut(s) 122, 593
HpyAV CCTTC 5 cut(s) 28, 53, 61, 456, 597
HpyCH4III ACNGT 4 cut(s) 493, 557, 563, 585
HpyCH4V TGCA 2 cut(s) 159, 192
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 253, 262, 451, 460, 666
HpyF3I CTNAG 8 cut(s) 165, 258, 288, 318, 366, 384, 450, 459
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 715
HspAI GCGC 2 cut(s) 204, 705
KasI GGCGCC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 171
LmnI GCTCC 2 cut(s) 253, 636
Lsp1109I GCAGC 3 cut(s) 143, 176, 581
LweI GCATC 2 cut(s) 225, 535
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 648
MaeIII GTNAC 8 cut(s) 16, 469, 487, 515, 557, 620, 653, 661
MalI GATC 2 cut(s) 140, 173
MboI GATC 2 cut(s) 138, 171
MboII GAAGA 3 cut(s) 136, 181, 698
MluCI AATT 1 cut(s) 89
MluI ACGCGT 1 cut(s) 498
Mly113I GGCGCC 1 cut(s) 204
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 2 cut(s) 146, 531
MspI CCGG 3 cut(s) 467, 485, 530
MspR9I CCNGG 3 cut(s) 110, 134, 531
MvaI CCWGG 2 cut(s) 110, 134
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 6 cut(s) 238, 253, 262, 451, 460, 666
NarI GGCGCC 1 cut(s) 204
NciI CCSGG 1 cut(s) 531
NdeII GATC 2 cut(s) 138, 171
NlaIII CATG 1 cut(s) 715
NlaIV GGNNCC 3 cut(s) 205, 255, 538
NmuCI GTSAC 3 cut(s) 16, 487, 661
PcsI WCGNNNNNNNCGW 1 cut(s) 497
Pfl23II CGTACG 1 cut(s) 114
PkrI GCNGC 4 cut(s) 158, 191, 231, 571
PluTI GGCGCC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 108, 132
PspGI CCWGG 2 cut(s) 108, 132
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 3 cut(s) 205, 255, 538
PspPI GGNCC 2 cut(s) 40, 536
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 4 cut(s) 116, 554, 587, 614
RsaNI GTAC 4 cut(s) 115, 553, 586, 613
RseI CAYNNNNRTG 2 cut(s) 146, 531
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 157, 190, 230, 570
Sau3AI GATC 2 cut(s) 138, 171
Sau96I GGNCC 2 cut(s) 40, 536
ScrFI CCNGG 3 cut(s) 110, 134, 531
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 2 cut(s) 225, 535
SfcI CTRYAG 1 cut(s) 157
SfoI GGCGCC 1 cut(s) 205
SinI GGWCC 2 cut(s) 40, 536
SmiMI CAYNNNNRTG 2 cut(s) 146, 531
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 1 cut(s) 89
SsiI CCGC 2 cut(s) 230, 627
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 3 cut(s) 108, 132, 529
StyI CCWWGG 2 cut(s) 249, 423
TaaI ACNGT 4 cut(s) 493, 557, 563, 585
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 3 cut(s) 53, 615, 688
TseFI GTSAC 3 cut(s) 16, 487, 661
TseI GCWGC 3 cut(s) 156, 189, 569
Tsp45I GTSAC 3 cut(s) 16, 487, 661
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 3 cut(s) 53, 615, 688
VpaK11BI GGWCC 2 cut(s) 40, 536
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.