Rh1CG188400

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000455
Physical Location & Seq
Reverse (-)
41062656 .. 41064194
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG188400.1

Sequence Viewer

Length: 657 bp
ATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTGAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGACGCCATTAAGAGCATCGATATCAAAGAGCCCGAGAAGCTCAAGCCTCCTCCTACGGATGCCAAGTCTACGGATGGCAAATCCACGGATGACAAATCCAAAGAAGCCAAGGACGTGTCTAAAGAGAAACAAAAGGAAGAAAAAACCAAAGACGGCGAGAAGCTGAAGGATGAGTCGAAGCTGAAGAACCCGTGTTGTATGGATTGTTACGGAGGACGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGCGGTCGGTGAACCCATGTTGTATGGATTGTTACGAAGGGCGTCGTGGTGGTCCCTGTGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACCTACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCAGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

218

Amino Acids

24.55

Weight (kDa)

8.54

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 245
AccII CGCG 1 cut(s) 427
AciI CCGC 5 cut(s) 425, 427, 430, 570, 607
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 4 cut(s) 5, 29, 362, 380
AcyI GRCGYC 3 cut(s) 180, 394, 469
AfaI GTAC 2 cut(s) 92, 530
AflIII ACRYGT 1 cut(s) 291
AhlI ACTAGT 1 cut(s) 590
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 108, 397
AluBI AGCT 5 cut(s) 160, 217, 340, 358, 582
AluI AGCT 5 cut(s) 160, 217, 340, 358, 582
Alw26I GTCTC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 548
ApeKI GCWGC 2 cut(s) 132, 165
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 2 cut(s) 404, 479
AsuHPI GGTGA 3 cut(s) 124, 188, 448
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 2 cut(s) 404, 479
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 119, 152
BccI CCATC 2 cut(s) 245, 527
BceAI ACGGC 2 cut(s) 346, 583
BciT130I CCWGG 2 cut(s) 110, 399
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 3 cut(s) 37, 133, 524
BglII AGATCT 1 cut(s) 16
BisI GCNGC 3 cut(s) 133, 166, 428
BlsI GCNGC 3 cut(s) 134, 167, 429
Bme1390I CCNGG 2 cut(s) 110, 399
Bme18I GGWCC 2 cut(s) 404, 479
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 404, 479
BmiI GGNNCC 2 cut(s) 406, 481
BmrFI CCNGG 2 cut(s) 110, 399
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 201, 226
BmuI ACTGGG 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 195
BsaHI GRCGYC 3 cut(s) 180, 394, 469
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 261, 285, 425
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 2 cut(s) 110, 399
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 3 cut(s) 261, 285, 425
BseGI GGATG 4 cut(s) 241, 256, 271, 352
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 2 cut(s) 216, 592
BseXI GCAGC 2 cut(s) 119, 152
Bsh1236I CGCG 1 cut(s) 427
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 550
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 551
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 3 cut(s) 167, 390, 465
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 3 cut(s) 167, 390, 465
BsnI GGCC 1 cut(s) 550
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 16, 114, 147
BspACI CCGC 5 cut(s) 425, 427, 430, 570, 607
BspANI GGCC 1 cut(s) 550
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 406, 481
BspMAI CTGCAG 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 3 cut(s) 261, 285, 425
BssMI GATC 3 cut(s) 16, 114, 147
BssNI GRCGYC 3 cut(s) 180, 394, 469
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 110, 399
Bst4CI ACNGT 2 cut(s) 506, 528
BstACI GRCGYC 3 cut(s) 180, 394, 469
BstC8I GCNNGC 3 cut(s) 513, 643, 649
BstDSI CCRYGG 2 cut(s) 261, 425
BstF5I GGATG 4 cut(s) 241, 256, 271, 352
BstFNI CGCG 1 cut(s) 427
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 3 cut(s) 19, 117, 150
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 16, 114, 147
BstMCI CGRYCG 1 cut(s) 434
BstMWI GCNNNNNNNGC 3 cut(s) 214, 417, 606
BstNI CCWGG 2 cut(s) 110, 399
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 2 cut(s) 108, 397
BstSFI CTRYAG 3 cut(s) 37, 133, 524
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 119, 152
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 1 cut(s) 550
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 2 cut(s) 261, 425
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 4 cut(s) 241, 256, 271, 352
BtsIMutI CAGTG 2 cut(s) 29, 628
Cac8I GCNNGC 3 cut(s) 513, 643, 649
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 2 cut(s) 404, 479
Cfr42I CCGCGG 1 cut(s) 428
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 2 cut(s) 188, 458
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 91, 529
CviAII CATG 2 cut(s) 444, 652
CviQI GTAC 2 cut(s) 91, 529
DpnI GATC 3 cut(s) 18, 116, 149
DpnII GATC 3 cut(s) 16, 114, 147
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 75
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 404, 479
Eco57I CTGAAG 4 cut(s) 5, 29, 362, 380
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 108, 397
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 447, 655
FaiI YATR 9 cut(s) 163, 377, 445, 452, 498, 543, 558, 585, 653
FaqI GGGAC 3 cut(s) 167, 390, 465
FatI CATG 2 cut(s) 443, 651
FauI CCCGC 1 cut(s) 614
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 133, 166, 428
FokI GGATG 4 cut(s) 248, 263, 278, 359
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 3 cut(s) 133, 166, 428
FspBI CTAG 1 cut(s) 591
GlaI GCGC 1 cut(s) 646
GluI GCNGC 3 cut(s) 133, 166, 428
HaeIII GGCC 1 cut(s) 550
HapII CCGG 1 cut(s) 551
HgaI GACGC 2 cut(s) 188, 458
HhaI GCGC 1 cut(s) 647
Hin1I GRCGYC 3 cut(s) 180, 394, 469
Hin1II CATG 2 cut(s) 447, 655
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HinfI GANTC 2 cut(s) 4, 350
HpaII CCGG 1 cut(s) 551
HphI GGTGA 3 cut(s) 124, 188, 448
Hpy166II GTNNAC 2 cut(s) 246, 439
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 49, 140
Hpy8I GTNNAC 2 cut(s) 246, 439
Hpy99I CGWCG 2 cut(s) 98, 474
HpyAV CCTTC 5 cut(s) 4, 37, 337, 458, 540
HpyCH4III ACNGT 2 cut(s) 506, 528
HpyCH4IV ACGT 3 cut(s) 89, 291, 394
HpyCH4V TGCA 2 cut(s) 135, 168
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 417, 606
HpySE526I ACGT 3 cut(s) 89, 291, 394
Hsp92I GRCGYC 3 cut(s) 180, 394, 469
Hsp92II CATG 2 cut(s) 447, 655
HspAI GCGC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 114
KspI CCGCGG 1 cut(s) 428
Kzo9I GATC 3 cut(s) 16, 114, 147
LmnI GCTCC 1 cut(s) 579
Lsp1109I GCAGC 2 cut(s) 119, 152
LweI GCATC 2 cut(s) 201, 226
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 1 cut(s) 591
MaeII ACGT 3 cut(s) 89, 291, 394
MaeIII GTNAC 7 cut(s) 176, 383, 458, 500, 563, 593, 601
MalI GATC 3 cut(s) 18, 116, 149
MboI GATC 3 cut(s) 16, 114, 147
MboII GAAGA 5 cut(s) 11, 112, 326, 373, 638
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 6 cut(s) 167, 234, 237, 383, 432, 570
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 110, 399
MvaI CCWGG 2 cut(s) 110, 399
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 3 cut(s) 214, 417, 606
NdeII GATC 3 cut(s) 16, 114, 147
NlaIII CATG 2 cut(s) 447, 655
NlaIV GGNNCC 2 cut(s) 406, 481
NmuCI GTSAC 2 cut(s) 176, 601
NspI RCATGY 1 cut(s) 655
PfeI GAWTC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 90
PkrI GCNGC 3 cut(s) 134, 167, 429
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 108, 397
PspGI CCWGG 2 cut(s) 108, 397
PspLI CGTACG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 406, 481
PspPI GGNCC 2 cut(s) 404, 479
PstI CTGCAG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 92, 530
RsaNI GTAC 2 cut(s) 91, 529
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 1 cut(s) 428
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 133, 166, 428
Sau3AI GATC 3 cut(s) 16, 114, 147
Sau96I GGNCC 2 cut(s) 404, 479
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 110, 399
SduI GDGCHC 1 cut(s) 210
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 2 cut(s) 201, 226
SfcI CTRYAG 3 cut(s) 37, 133, 524
Sfr303I CCGCGG 1 cut(s) 428
SgrBI CCGCGG 1 cut(s) 428
SinI GGWCC 2 cut(s) 404, 479
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 590
Sse9I AATT 1 cut(s) 65
SsiI CCGC 5 cut(s) 425, 427, 430, 570, 607
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 108, 397
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 506, 528
TaiI ACGT 3 cut(s) 92, 294, 397
TaqI TCGA 2 cut(s) 195, 353
TasI AATT 1 cut(s) 65
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 29, 628
TseFI GTSAC 2 cut(s) 176, 601
TseI GCWGC 2 cut(s) 132, 165
Tsp45I GTSAC 2 cut(s) 176, 601
TspGWI ACGGA 4 cut(s) 248, 263, 278, 402
TspRI CASTG 2 cut(s) 29, 628
VpaK11BI GGWCC 2 cut(s) 404, 479
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 245
XspI CTAG 1 cut(s) 591
ZraI GACGTC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.