FvH4_3g00441

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000455
Physical Location & Seq
Forward (+)
237285 .. 238571
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00441.t1

Sequence Viewer

Length: 804 bp
ATGGGCGAAAAAAAGGTGACGATAATGGTTCTGAAGGTGGACCTTCAGTGTGAAAAATGCTACAAGAAGGTTAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACATACGACGAGAAGAACAACCAGGTAATCGTCAAGGTGGTCTGCTGCAGTCCTGAGAAGATCAGAGACAAGCTATGCTGCGAAGGAGATGGCGCCATCAAGAGAATCGACATCTTAGAGCCTAAAAAGAAACAAGAGCCTGAAAAGACACCAAAGCCTAAACAGAAACAAGAGCCTGAAAAGACACCAGAGCCTGAAAAGAAACAAGAGCCTGAAAAGACACCAGAGCCTGAAAAGAAACAAGAGCCTGAAAAGGAACCAGAGCCTGAAAAGAAACCAGAGAATCCGAAGCTTACTGCGCCTCCGTTTCCTGCTTACCCTCCGGTGACAGTGAACGTGTGTTGTATTGTTTGTTACGGACGGCATCCGGGTTGTCCCTGCCAAATCCGGGACGCAGAGAAGTCGAAGCCTACTCCGCCTCCACCTCCGCCTCCGCCTCCGGTTGTTCCTGCTAACCCTCCGGTGACGGGGAGCACGTGTTGTATGGATTGTTACGGAGGGCATCCGGGTGGTCCTTGCCAAACTGGGTACGGTTACGGTGGGGCAGCACCATACATAGAGTACGATGGCTACTATGGAAGGCCAGTGTATGATAGTTACGGCGGTGGGAGGAGCTACTCCACTAGTAGTTACTGCGTGACACGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

268

Amino Acids

29.7

Weight (kDa)

8.16

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypan_PARP PF05887 77 - 132 1.8e-06 Procyclic acidic repetitive protein (PARP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AciI CCGC 4 cut(s) 527, 539, 545, 714
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcvI CACGTG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 2 cut(s) 641, 674
AfiI CCNNNNNNNGG 2 cut(s) 499, 578
AflIII ACRYGT 2 cut(s) 447, 587
AhlI ACTAGT 1 cut(s) 734
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 3 cut(s) 184, 403, 726
AluI AGCT 3 cut(s) 184, 403, 726
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 2 cut(s) 99, 171
AlwNI CAGNNNCTG 3 cut(s) 305, 341, 377
AoxI GGCC 1 cut(s) 692
ApeKI GCWGC 3 cut(s) 156, 189, 656
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 3 cut(s) 206, 412, 794
AspS9I GGNCC 2 cut(s) 40, 623
AsuC2I CCSGG 3 cut(s) 480, 500, 618
AsuHPI GGTGA 3 cut(s) 28, 448, 586
AvaII GGWCC 2 cut(s) 40, 623
BanI GGYRCC 1 cut(s) 203
BbrPI CACGTG 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 143, 176, 668
BccI CCATC 4 cut(s) 194, 215, 671, 803
BceAI ACGGC 2 cut(s) 488, 727
BcgI CGANNNNNNTGC 2 cut(s) 495, 529
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 3 cut(s) 480, 500, 618
BcoDI GTCTC 2 cut(s) 99, 171
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 1 cut(s) 735
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 3 cut(s) 157, 190, 657
BlsI GCNGC 3 cut(s) 158, 191, 658
Bme1390I CCNGG 4 cut(s) 134, 480, 500, 618
Bme18I GGWCC 2 cut(s) 40, 623
BmgT120I GGNCC 2 cut(s) 40, 623
BmiI GGNNCC 2 cut(s) 205, 369
BmrFI CCNGG 4 cut(s) 134, 480, 500, 618
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 484, 622
BmuI ACTGGG 1 cut(s) 645
BpuMI CCSGG 3 cut(s) 480, 500, 618
BsaAI YACGTR 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 99
BsaWI WCCGGW 3 cut(s) 433, 550, 571
BsaXI ACNNNNNCTCC 6 cut(s) 397, 427, 514, 544, 574, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 578
Bse1I ACTGG 2 cut(s) 640, 695
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 475, 613
BseLI CCNNNNNNNGG 2 cut(s) 499, 578
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 640, 695
BseRI GAGGAG 1 cut(s) 736
BseXI GCAGC 3 cut(s) 143, 176, 668
BshFI GGCC 1 cut(s) 694
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 6 cut(s) 434, 479, 499, 551, 572, 617
BslFI GGGAC 2 cut(s) 471, 515
BslI CCNNNNNNNGG 2 cut(s) 499, 578
BsmAI GTCTC 2 cut(s) 99, 171
BsmFI GGGAC 2 cut(s) 471, 515
BsnI GGCC 1 cut(s) 694
Bso31I GGTCTC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 4 cut(s) 527, 539, 545, 714
BspANI GGCC 1 cut(s) 694
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 205, 369
BspMAI CTGCAG 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 99
BsrI ACTGG 2 cut(s) 640, 695
BssMI GATC 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 442, 644, 650
BstACI GRCGYC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 2 cut(s) 165, 226
BstF5I GGATG 2 cut(s) 475, 613
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 3 cut(s) 206, 412, 794
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 2 cut(s) 99, 171
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 3 cut(s) 409, 526, 753
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 132, 478, 498, 616
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 143, 176, 668
BsuRI GGCC 1 cut(s) 694
BtsCI GGATG 2 cut(s) 475, 613
BtsIMutI CAGTG 4 cut(s) 53, 447, 702, 775
Cac8I GCNNGC 1 cut(s) 790
CaiI CAGNNNCTG 3 cut(s) 305, 341, 377
CfoI GCGC 3 cut(s) 206, 412, 794
Cfr13I GGNCC 2 cut(s) 40, 623
CseI GACGC 1 cut(s) 512
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 640, 673
CviAII CATG 1 cut(s) 799
CviQI GTAC 2 cut(s) 640, 673
DdeI CTNAG 2 cut(s) 165, 226
DinI GGCGCC 1 cut(s) 205
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
EciI GGCGGA 3 cut(s) 516, 528, 534
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 40, 623
Eco57I CTGAAG 2 cut(s) 29, 53
Eco72I CACGTG 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
FaeI CATG 1 cut(s) 802
FaiI YATR 8 cut(s) 115, 187, 596, 664, 668, 687, 702, 800
FaqI GGGAC 2 cut(s) 471, 515
FatI CATG 1 cut(s) 798
Fnu4HI GCNGC 3 cut(s) 157, 190, 657
FokI GGATG 2 cut(s) 462, 600
Fsp4HI GCNGC 3 cut(s) 157, 190, 657
FspBI CTAG 1 cut(s) 735
GlaI GCGC 3 cut(s) 205, 411, 793
GluI GCNGC 3 cut(s) 157, 190, 657
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 1 cut(s) 694
HapII CCGG 6 cut(s) 434, 479, 499, 551, 572, 617
HgaI GACGC 1 cut(s) 512
HhaI GCGC 3 cut(s) 206, 412, 794
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 802
Hin6I GCGC 3 cut(s) 204, 410, 792
HinP1I GCGC 3 cut(s) 204, 410, 792
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 2 cut(s) 216, 394
HpaII CCGG 6 cut(s) 434, 479, 499, 551, 572, 617
HphI GGTGA 3 cut(s) 28, 448, 586
Hpy166II GTNNAC 2 cut(s) 40, 445
Hpy188I TCNGA 3 cut(s) 33, 176, 399
Hpy188III TCNNGA 2 cut(s) 164, 211
Hpy8I GTNNAC 2 cut(s) 40, 445
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 5 cut(s) 28, 53, 61, 188, 684
HpyCH4III ACNGT 3 cut(s) 442, 644, 650
HpyCH4IV ACGT 2 cut(s) 447, 587
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 3 cut(s) 409, 526, 753
HpyF3I CTNAG 2 cut(s) 165, 226
HpySE526I ACGT 2 cut(s) 447, 587
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 802
HspAI GCGC 3 cut(s) 204, 410, 792
KasI GGCGCC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 582, 723
Lsp1109I GCAGC 3 cut(s) 143, 176, 668
LweI GCATC 2 cut(s) 484, 622
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 1 cut(s) 735
MaeII ACGT 2 cut(s) 447, 587
MaeIII GTNAC 9 cut(s) 16, 436, 464, 574, 602, 644, 707, 740, 748
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 3 cut(s) 136, 181, 785
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 204
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 618
MspI CCGG 6 cut(s) 434, 479, 499, 551, 572, 617
MspR9I CCNGG 4 cut(s) 134, 480, 500, 618
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 409, 526, 753
NarI GGCGCC 1 cut(s) 204
NciI CCSGG 3 cut(s) 480, 500, 618
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 802
NlaIV GGNNCC 2 cut(s) 205, 369
NmuCI GTSAC 4 cut(s) 16, 436, 574, 748
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PfeI GAWTC 2 cut(s) 216, 394
PfoI TCCNGGA 1 cut(s) 498
PkrI GCNGC 3 cut(s) 158, 191, 658
PluTI GGCGCC 1 cut(s) 207
PmaCI CACGTG 1 cut(s) 588
PmlI CACGTG 1 cut(s) 588
Ppu21I YACGTR 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 132
PspCI CACGTG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 205, 369
PspPI GGNCC 2 cut(s) 40, 623
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 3 cut(s) 305, 341, 377
RsaI GTAC 2 cut(s) 641, 674
RsaNI GTAC 2 cut(s) 640, 673
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 3 cut(s) 157, 190, 657
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 2 cut(s) 40, 623
ScrFI CCNGG 4 cut(s) 134, 480, 500, 618
SduI GDGCHC 1 cut(s) 587
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 2 cut(s) 484, 622
SfcI CTRYAG 1 cut(s) 157
SfoI GGCGCC 1 cut(s) 205
SinI GGWCC 2 cut(s) 40, 623
SmiMI CAYNNNNRTG 1 cut(s) 618
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 1 cut(s) 89
SsiI CCGC 4 cut(s) 527, 539, 545, 714
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 1 cut(s) 735
StyD4I CCNGG 4 cut(s) 132, 478, 498, 616
TaaI ACNGT 3 cut(s) 442, 644, 650
TaiI ACGT 2 cut(s) 450, 590
TaqI TCGA 2 cut(s) 219, 515
TasI AATT 1 cut(s) 89
TfiI GAWTC 2 cut(s) 216, 394
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 4 cut(s) 53, 447, 702, 775
TseFI GTSAC 4 cut(s) 16, 436, 574, 748
TseI GCWGC 3 cut(s) 156, 189, 656
Tsp45I GTSAC 4 cut(s) 16, 436, 574, 748
TspGWI ACGGA 3 cut(s) 405, 483, 621
TspRI CASTG 4 cut(s) 53, 447, 702, 775
VpaK11BI GGWCC 2 cut(s) 40, 623
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.