RchiOBHm_Chr1g0347291

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000455
Physical Location & Seq
Reverse (-)
39904371 .. 39905024
654 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57344

Sequence Viewer

Length: 555 bp
ATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGTGACCAGACGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCTCAAAGACAAGCCCAAAGAAGCCAAGGACGTGTCTAAAGAGAAACCAAAGGAAGATAAACCCAAAGACGGCCAGAAGCCGAAGGATGAGTCGAAGCCCAAGGATGAGTCAAAGCCGAAGAACCCGTGTTGTATGGACTGTTACGGAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACAACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

184

Amino Acids

20.84

Weight (kDa)

8.81

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 2 cut(s) 468, 505
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 5, 29
AcyI GRCGYC 2 cut(s) 180, 367
AfaI GTAC 2 cut(s) 92, 428
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 246
AhlI ACTAGT 1 cut(s) 488
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 2 cut(s) 108, 370
AluBI AGCT 3 cut(s) 160, 217, 480
AluI AGCT 3 cut(s) 160, 217, 480
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 286, 446
ApeKI GCWGC 2 cut(s) 132, 165
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 2 cut(s) 182, 545
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 119, 152
BccI CCATC 2 cut(s) 425, 554
BceAI ACGGC 2 cut(s) 301, 481
BciT130I CCWGG 2 cut(s) 110, 372
BclI TGATCA 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 2 cut(s) 37, 133
BfoI RGCGCY 1 cut(s) 183
BglII AGATCT 1 cut(s) 16
BisI GCNGC 2 cut(s) 133, 166
BlsI GCNGC 2 cut(s) 134, 167
Bme1390I CCNGG 2 cut(s) 110, 372
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 181, 379
BmrFI CCNGG 2 cut(s) 110, 372
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 80
BsaHI GRCGYC 2 cut(s) 180, 367
BsaJI CCNNGG 2 cut(s) 240, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 394
BseBI CCWGG 2 cut(s) 110, 372
BseDI CCNNGG 2 cut(s) 240, 315
BseGI GGATG 2 cut(s) 307, 325
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 2 cut(s) 119, 152
BshFI GGCC 2 cut(s) 288, 448
BshNI GGYRCC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 449
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 167, 363
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 167, 363
BsnI GGCC 2 cut(s) 288, 448
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 4 cut(s) 16, 114, 147, 198
BspACI CCGC 2 cut(s) 468, 505
BspANI GGCC 2 cut(s) 288, 448
BspLI GGNNCC 2 cut(s) 181, 379
BspMAI CTGCAG 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 240, 315
BssMI GATC 4 cut(s) 16, 114, 147, 198
BssNI GRCGYC 2 cut(s) 180, 367
BssT1I CCWWGG 2 cut(s) 240, 315
Bst2UI CCWGG 2 cut(s) 110, 372
Bst4CI ACNGT 3 cut(s) 356, 404, 426
BstACI GRCGYC 2 cut(s) 180, 367
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 411, 541
BstF5I GGATG 2 cut(s) 307, 325
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 182, 545
BstKTI GATC 4 cut(s) 19, 117, 150, 201
BstMBI GATC 4 cut(s) 16, 114, 147, 198
BstMWI GCNNNNNNNGC 2 cut(s) 214, 504
BstNI CCWGG 2 cut(s) 110, 372
BstSCI CCNGG 2 cut(s) 108, 370
BstSFI CTRYAG 2 cut(s) 37, 133
BstV1I GCAGC 2 cut(s) 119, 152
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 2 cut(s) 288, 448
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 307, 325
BtsIMutI CAGTG 2 cut(s) 29, 526
Cac8I GCNNGC 2 cut(s) 411, 541
CfoI GCGC 2 cut(s) 182, 545
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 377
CseI GACGC 1 cut(s) 356
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 91, 427
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 1 cut(s) 550
CviQI GTAC 2 cut(s) 91, 427
DinI GGCGCC 1 cut(s) 181
DpnI GATC 4 cut(s) 18, 116, 149, 200
DpnII GATC 4 cut(s) 16, 114, 147, 198
EaeI YGGCCR 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 240, 315
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 5, 29
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 108, 370
EcoT14I CCWWGG 2 cut(s) 240, 315
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 240, 315
FaeI CATG 1 cut(s) 553
FaiI YATR 8 cut(s) 163, 350, 396, 422, 441, 456, 483, 551
FaqI GGGAC 2 cut(s) 167, 363
FatI CATG 1 cut(s) 549
FauI CCCGC 1 cut(s) 512
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 133, 166
FokI GGATG 2 cut(s) 314, 332
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 133, 166
FspBI CTAG 1 cut(s) 489
GlaI GCGC 2 cut(s) 181, 544
GluI GCNGC 2 cut(s) 133, 166
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 288, 448
HapII CCGG 1 cut(s) 449
HgaI GACGC 1 cut(s) 356
HhaI GCGC 2 cut(s) 182, 545
Hin1I GRCGYC 2 cut(s) 180, 367
Hin1II CATG 1 cut(s) 553
Hin6I GCGC 2 cut(s) 180, 543
HinP1I GCGC 2 cut(s) 180, 543
HinfI GANTC 3 cut(s) 4, 305, 323
HpaII CCGG 1 cut(s) 449
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 49, 140, 196
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 4, 37, 292, 438
HpyCH4III ACNGT 3 cut(s) 356, 404, 426
HpyCH4IV ACGT 3 cut(s) 79, 89, 246
HpyCH4V TGCA 2 cut(s) 135, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 504
HpySE526I ACGT 3 cut(s) 79, 89, 246
Hsp92I GRCGYC 2 cut(s) 180, 367
Hsp92II CATG 1 cut(s) 553
HspAI GCGC 2 cut(s) 180, 543
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 4 cut(s) 16, 114, 147, 198
LmnI GCTCC 1 cut(s) 477
Lsp1109I GCAGC 2 cut(s) 119, 152
LweI GCATC 1 cut(s) 201
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 1 cut(s) 489
MaeII ACGT 3 cut(s) 79, 89, 246
MaeIII GTNAC 6 cut(s) 80, 356, 398, 461, 491, 499
MalI GATC 4 cut(s) 18, 116, 149, 200
MboI GATC 4 cut(s) 16, 114, 147, 198
MboII GAAGA 5 cut(s) 11, 112, 281, 346, 536
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 2 cut(s) 314, 332
MnlI CCTC 4 cut(s) 81, 167, 356, 468
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 110, 372
MvaI CCWGG 2 cut(s) 110, 372
MwoI GCNNNNNNNGC 2 cut(s) 214, 504
NarI GGCGCC 1 cut(s) 180
NdeII GATC 4 cut(s) 16, 114, 147, 198
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 2 cut(s) 181, 379
NmuCI GTSAC 2 cut(s) 80, 499
PfeI GAWTC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 90
PkrI GCNGC 2 cut(s) 134, 167
PleI GAGTC 2 cut(s) 313, 331
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 2 cut(s) 313, 331
Ppu21I YACGTR 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 108, 370
PspGI CCWGG 2 cut(s) 108, 370
PspLI CGTACG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 181, 379
PspPI GGNCC 1 cut(s) 377
PstI CTGCAG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 92, 428
RsaNI GTAC 2 cut(s) 91, 427
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 133, 166
Sau3AI GATC 4 cut(s) 16, 114, 147, 198
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 2 cut(s) 314, 332
ScrFI CCNGG 2 cut(s) 110, 372
SduI GDGCHC 1 cut(s) 210
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 2 cut(s) 37, 133
SfoI GGCGCC 1 cut(s) 181
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 1 cut(s) 65
SsiI CCGC 2 cut(s) 468, 505
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 108, 370
StyI CCWWGG 2 cut(s) 240, 315
TaaI ACNGT 3 cut(s) 356, 404, 426
TaiI ACGT 3 cut(s) 82, 92, 249
TaqI TCGA 2 cut(s) 195, 308
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 29, 526
TseFI GTSAC 2 cut(s) 80, 499
TseI GCWGC 2 cut(s) 132, 165
Tsp45I GTSAC 2 cut(s) 80, 499
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 29, 526
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 1 cut(s) 65
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.