Rh1DG199900

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000455
Physical Location & Seq
Reverse (-)
39248662 .. 39261359
12698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG199900.1

Sequence Viewer

Length: 846 bp
ATGGTCGTTCCGCCCCTGTATTCAATCATTTCGCCCAAACTCTGTCCAAAACATCAGATCTCATCTGATCGAGCACTCACTGCAACAACAATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGGCGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGATGCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCTCCTCCTCCTCCTGCGCCGAAACCCGCTCCGGCTCCACCTCCGGCGCCGAAACCTGCTCCGGCTCCACCTCCGGCTCCGAAACCTGCTCCGGCTCCACCTCCGGCGCCTAAACCAGCTCCAGCTCCGGAGCCAAAACCTGCTCCGGTTCCTCCTTGCTGTCCGAGGCCTGTGCACCCGTGTTGTATGGATTGTTACGAAGGGCGTCGTGGTGGACCTTGTGAGACTGGGTATGGTTACGGTGGGCGTGCCCCGGCTCCGGTTCCTGCTTGCCCTCCGTGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCCTGCCCCTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTACGTGACCCGCCCCGATTGTTTCAGAGAAGAAAATCCTCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

281

Amino Acids

30.45

Weight (kDa)

8.91

Isoelectric Point (pI)

65.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 403, 433, 487
AccB1I GGYRCC 2 cut(s) 385, 445
AccBSI CCGCTC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 129
AccIII TCCGGA 1 cut(s) 466
AciI CCGC 4 cut(s) 11, 366, 759, 796
AcoI YGGCCR 1 cut(s) 620
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 2 cut(s) 119, 143
AcyI GRCGYC 4 cut(s) 386, 446, 544, 658
AfaI GTAC 2 cut(s) 206, 719
AfiI CCNNNNNNNGG 1 cut(s) 598
AgsI TTSAA 1 cut(s) 24
AhlI ACTAGT 1 cut(s) 779
AjnI CCWGG 3 cut(s) 198, 222, 661
AluBI AGCT 4 cut(s) 274, 458, 464, 771
AluI AGCT 4 cut(s) 274, 458, 464, 771
Alw21I GWGCWC 2 cut(s) 76, 516
Alw26I GTCTC 2 cut(s) 189, 557
Alw44I GTGCAC 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 4 cut(s) 506, 620, 698, 737
ApaLI GTGCAC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 246, 279
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 4 cut(s) 358, 388, 448, 836
AspS9I GGNCC 2 cut(s) 554, 668
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 3 cut(s) 118, 238, 637
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 2 cut(s) 554, 668
BaeGI GKGCMC 2 cut(s) 516, 592
BanI GGYRCC 2 cut(s) 385, 445
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 76, 516
BbvI GCAGC 2 cut(s) 233, 266
BccI CCATC 2 cut(s) 716, 845
BceAI ACGGC 1 cut(s) 772
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BciT130I CCWGG 3 cut(s) 200, 224, 663
BclI TGATCA 1 cut(s) 228
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 189, 557
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 1 cut(s) 780
BfmI CTRYAG 2 cut(s) 151, 247
BfoI RGCGCY 2 cut(s) 389, 449
BfuAI ACCTGC 3 cut(s) 403, 433, 487
BglII AGATCT 1 cut(s) 57
BisI GCNGC 2 cut(s) 247, 280
BlsI GCNGC 2 cut(s) 248, 281
Bme1390I CCNGG 4 cut(s) 200, 224, 593, 663
Bme18I GGWCC 2 cut(s) 554, 668
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 554, 668
BmrFI CCNGG 4 cut(s) 200, 224, 593, 663
BmrI ACTGGG 2 cut(s) 576, 690
BmsI GCATC 2 cut(s) 284, 315
BmuI ACTGGG 2 cut(s) 576, 690
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 790
BsaHI GRCGYC 4 cut(s) 386, 446, 544, 658
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 503, 591, 617
BsaWI WCCGGW 3 cut(s) 466, 484, 598
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse118I RCCGGY 2 cut(s) 622, 739
Bse1I ACTGG 2 cut(s) 571, 685
BseAI TCCGGA 1 cut(s) 466
BseBI CCWGG 3 cut(s) 200, 224, 663
BseDI CCNNGG 3 cut(s) 503, 591, 617
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 598
BseNI ACTGG 2 cut(s) 571, 685
BseRI GAGGAG 5 cut(s) 330, 333, 336, 339, 781
BseSI GKGCMC 2 cut(s) 516, 592
BseXI GCAGC 2 cut(s) 233, 266
BshFI GGCC 4 cut(s) 508, 622, 700, 739
BshNI GGYRCC 2 cut(s) 385, 445
BsiHKAI GWGCWC 2 cut(s) 76, 516
BsiHKCI CYCGRG 1 cut(s) 323
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 281, 654
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 2 cut(s) 189, 557
BsmFI GGGAC 2 cut(s) 281, 654
BsnI GGCC 4 cut(s) 508, 622, 700, 739
Bso31I GGTCTC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 4 cut(s) 76, 324, 516, 592
Bsp13I TCCGGA 1 cut(s) 466
Bsp143I GATC 5 cut(s) 57, 67, 228, 261, 312
BspACI CCGC 4 cut(s) 11, 366, 759, 796
BspANI GGCC 4 cut(s) 508, 622, 700, 739
BspEI TCCGGA 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 251
BspMI ACCTGC 3 cut(s) 403, 433, 487
BspT107I GGYRCC 2 cut(s) 385, 445
BspTNI GGTCTC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 368
BsrFI RCCGGY 2 cut(s) 622, 739
BsrI ACTGG 2 cut(s) 571, 685
BssAI RCCGGY 2 cut(s) 622, 739
BssECI CCNNGG 3 cut(s) 503, 591, 617
BssMI GATC 5 cut(s) 57, 67, 228, 261, 312
BssNI GRCGYC 4 cut(s) 386, 446, 544, 658
Bst2UI CCWGG 3 cut(s) 200, 224, 663
Bst4CI ACNGT 3 cut(s) 581, 695, 717
BstACI GRCGYC 4 cut(s) 386, 446, 544, 658
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 4 cut(s) 588, 610, 702, 832
BstDSI CCRYGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 299
BstH2I RGCGCY 2 cut(s) 389, 449
BstHHI GCGC 4 cut(s) 358, 388, 448, 836
BstKTI GATC 5 cut(s) 60, 70, 231, 264, 315
BstMAI GTCTC 2 cut(s) 189, 557
BstMBI GATC 5 cut(s) 57, 67, 228, 261, 312
BstMWI GCNNNNNNNGC 3 cut(s) 80, 303, 328
BstNI CCWGG 3 cut(s) 200, 224, 663
BstSCI CCNGG 4 cut(s) 198, 222, 591, 661
BstSFI CTRYAG 2 cut(s) 151, 247
BstSLI GKGCMC 2 cut(s) 516, 592
BstV1I GCAGC 2 cut(s) 233, 266
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 4 cut(s) 508, 622, 700, 739
BtgI CCRYGG 1 cut(s) 617
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 143
BveI ACCTGC 3 cut(s) 403, 433, 487
Cac8I GCNNGC 4 cut(s) 588, 610, 702, 832
CfoI GCGC 4 cut(s) 358, 388, 448, 836
Cfr10I RCCGGY 2 cut(s) 622, 739
Cfr13I GGNCC 2 cut(s) 554, 668
CseI GACGC 2 cut(s) 533, 647
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 2 cut(s) 205, 718
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 1 cut(s) 841
CviQI GTAC 2 cut(s) 205, 718
DinI GGCGCC 2 cut(s) 387, 447
DpnI GATC 5 cut(s) 59, 69, 230, 263, 314
DpnII GATC 5 cut(s) 57, 67, 228, 261, 312
EaeI YGGCCR 1 cut(s) 620
Eco147I AGGCCT 2 cut(s) 508, 700
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 554, 668
Eco57I CTGAAG 2 cut(s) 119, 143
Eco88I CYCGRG 1 cut(s) 323
EcoRII CCWGG 3 cut(s) 198, 222, 661
EcoT22I ATGCAT 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 324
EgeI GGCGCC 2 cut(s) 387, 447
EheI GGCGCC 2 cut(s) 387, 447
FaeI CATG 1 cut(s) 844
FaqI GGGAC 2 cut(s) 281, 654
FatI CATG 1 cut(s) 840
FauI CCCGC 2 cut(s) 373, 803
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 247, 280
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 247, 280
FspBI CTAG 1 cut(s) 780
GlaI GCGC 4 cut(s) 357, 387, 447, 835
GluI GCNGC 2 cut(s) 247, 280
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 2 cut(s) 389, 449
HaeIII GGCC 4 cut(s) 508, 622, 700, 739
HgaI GACGC 2 cut(s) 533, 647
HhaI GCGC 4 cut(s) 358, 388, 448, 836
Hin1I GRCGYC 4 cut(s) 386, 446, 544, 658
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 4 cut(s) 356, 386, 446, 834
HinP1I GCGC 4 cut(s) 356, 386, 446, 834
HinfI GANTC 1 cut(s) 118
HphI GGTGA 3 cut(s) 118, 238, 637
Hpy166II GTNNAC 4 cut(s) 130, 514, 554, 628
Hpy188I TCNGA 6 cut(s) 57, 67, 123, 420, 504, 812
Hpy188III TCNNGA 4 cut(s) 163, 254, 310, 467
Hpy8I GTNNAC 4 cut(s) 130, 514, 554, 628
Hpy99I CGWCG 2 cut(s) 212, 549
HpyAV CCTTC 7 cut(s) 97, 118, 143, 151, 533, 647, 729
HpyCH4III ACNGT 3 cut(s) 581, 695, 717
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 5 cut(s) 83, 249, 282, 297, 514
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 303, 328
HpySE526I ACGT 1 cut(s) 789
Hsp92I GRCGYC 4 cut(s) 386, 446, 544, 658
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 4 cut(s) 356, 386, 446, 834
KasI GGCGCC 2 cut(s) 385, 445
Kpn2I TCCGGA 1 cut(s) 466
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 5 cut(s) 57, 67, 228, 261, 312
Lsp1109I GCAGC 2 cut(s) 233, 266
LweI GCATC 2 cut(s) 284, 315
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 1 cut(s) 780
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 8 cut(s) 106, 533, 575, 647, 689, 752, 782, 790
MalI GATC 5 cut(s) 59, 69, 230, 263, 314
MbiI CCGCTC 1 cut(s) 368
MboI GATC 5 cut(s) 57, 67, 228, 261, 312
MboII GAAGA 2 cut(s) 226, 827
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 4 cut(s) 76, 324, 516, 592
MluCI AATT 1 cut(s) 179
Mly113I GGCGCC 2 cut(s) 386, 446
Mph1103I ATGCAT 1 cut(s) 299
MroI TCCGGA 1 cut(s) 466
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 236
MspR9I CCNGG 4 cut(s) 200, 224, 593, 663
MvaI CCWGG 3 cut(s) 200, 224, 663
MwoI GCNNNNNNNGC 3 cut(s) 80, 303, 328
NarI GGCGCC 2 cut(s) 386, 446
NciI CCSGG 1 cut(s) 593
NdeII GATC 5 cut(s) 57, 67, 228, 261, 312
NlaIII CATG 1 cut(s) 844
NmuCI GTSAC 2 cut(s) 106, 790
NsiI ATGCAT 1 cut(s) 299
PceI AGGCCT 2 cut(s) 508, 700
PfeI GAWTC 1 cut(s) 118
Pfl23II CGTACG 1 cut(s) 204
PkrI GCNGC 2 cut(s) 248, 281
PluTI GGCGCC 2 cut(s) 389, 449
Ppu21I YACGTR 1 cut(s) 790
Psp6I CCWGG 3 cut(s) 198, 222, 661
PspGI CCWGG 3 cut(s) 198, 222, 661
PspLI CGTACG 1 cut(s) 204
PspPI GGNCC 2 cut(s) 554, 668
PstI CTGCAG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 2 cut(s) 206, 719
RsaNI GTAC 2 cut(s) 205, 718
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 247, 280
Sau3AI GATC 5 cut(s) 57, 67, 228, 261, 312
Sau96I GGNCC 2 cut(s) 554, 668
ScrFI CCNGG 4 cut(s) 200, 224, 593, 663
SduI GDGCHC 4 cut(s) 76, 324, 516, 592
SexAI ACCWGGT 1 cut(s) 222
SfaNI GCATC 2 cut(s) 284, 315
SfcI CTRYAG 2 cut(s) 151, 247
SfoI GGCGCC 2 cut(s) 387, 447
SinI GGWCC 2 cut(s) 554, 668
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 825
SmoI CTYRAG 1 cut(s) 825
SpeI ACTAGT 1 cut(s) 779
Sse9I AATT 1 cut(s) 179
SseBI AGGCCT 2 cut(s) 508, 700
SsiI CCGC 4 cut(s) 11, 366, 759, 796
SspDI GGCGCC 2 cut(s) 385, 445
SspMI CTAG 1 cut(s) 780
StuI AGGCCT 2 cut(s) 508, 700
StyD4I CCNGG 4 cut(s) 198, 222, 591, 661
TaaI ACNGT 3 cut(s) 581, 695, 717
TaiI ACGT 1 cut(s) 792
TaqI TCGA 2 cut(s) 70, 309
TasI AATT 1 cut(s) 179
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 85, 143
TseFI GTSAC 2 cut(s) 106, 790
TseI GCWGC 2 cut(s) 246, 279
Tsp45I GTSAC 2 cut(s) 106, 790
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 2 cut(s) 85, 143
VneI GTGCAC 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 554, 668
XapI RAATTY 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 780
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.