Rh1DG098100

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000455
Physical Location & Seq
Forward (+)
18535385 .. 18536963
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG098100.1

Sequence Viewer

Length: 765 bp
ATGATTCTGAAGGTAGACCTTCAGTGTGAACAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATACGAGACCAGACGTACGACGAGAAGAACAACCTGGTGATCATCAAAGTGGTCTGCTGTAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCTCAAGACTCCTTCTACGGATGACAAATCCAAACAAACACTAGCTGCAGGTAAAACCAAAGATACCAAGGACGTGTCTAAAGAGAAACAAAAGGAAGATAAACCCGAAGACGGTGAGAAGCCGAAGGATGAGTCGAAGAAGAAGCGTGCTCCAGTTACTACTTGTCCTCCGCGGCTGGTGAACCCGTGCTGTATGGATTGTTATGGAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGCGGCAGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCATCCGCGGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACGGTAGGCTTGCCCTTTACATGCAGTACGATGGCTACTATGGAAGGCCGATCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

254

Amino Acids

28.55

Weight (kDa)

8.72

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 457
Acc36I ACCTGC 2 cut(s) 254, 457
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 388, 460, 535
AcoI YGGCCR 1 cut(s) 539
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 5, 29
AcyI GRCGYC 4 cut(s) 180, 427, 502, 577
AfaI GTAC 2 cut(s) 92, 638
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 288
AhlI ACTAGT 1 cut(s) 698
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 4 cut(s) 108, 430, 505, 580
AluBI AGCT 4 cut(s) 160, 217, 260, 690
AluI AGCT 4 cut(s) 160, 217, 260, 690
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 539, 656
ApeKI GCWGC 2 cut(s) 165, 260
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 2 cut(s) 182, 755
AspS9I GGNCC 3 cut(s) 437, 512, 587
AsuHPI GGTGA 5 cut(s) 124, 341, 406, 481, 556
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 3 cut(s) 437, 512, 587
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 152, 247
BccI CCATC 3 cut(s) 537, 635, 764
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 4 cut(s) 110, 432, 507, 582
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 2 cut(s) 257, 699
BfmI CTRYAG 3 cut(s) 37, 133, 261
BfoI RGCGCY 1 cut(s) 183
BfuAI ACCTGC 2 cut(s) 254, 457
BisI GCNGC 7 cut(s) 166, 261, 389, 461, 464, 536, 539
BlsI GCNGC 7 cut(s) 167, 262, 390, 462, 465, 537, 540
Bme1390I CCNGG 4 cut(s) 110, 432, 507, 582
Bme18I GGWCC 3 cut(s) 437, 512, 587
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 437, 512, 587
BmiI GGNNCC 4 cut(s) 181, 439, 514, 589
BmrFI CCNGG 4 cut(s) 110, 432, 507, 582
BmrI ACTGGG 1 cut(s) 609
BmsI GCATC 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 203
BsaHI GRCGYC 4 cut(s) 180, 427, 502, 577
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 282, 386, 458, 533
BsaXI ACNNNNNCTCC 4 cut(s) 367, 397, 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 2 cut(s) 368, 604
BseBI CCWGG 4 cut(s) 110, 432, 507, 582
BseDI CCNNGG 4 cut(s) 282, 386, 458, 533
BseGI GGATG 3 cut(s) 241, 349, 529
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 368, 604
BseRI GAGGAG 1 cut(s) 700
BseX3I CGGCCG 1 cut(s) 539
BseXI GCAGC 2 cut(s) 152, 247
Bsh1236I CGCG 3 cut(s) 388, 460, 535
Bsh1285I CGRYCG 1 cut(s) 542
BshFI GGCC 2 cut(s) 541, 658
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 542
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 4 cut(s) 167, 423, 498, 573
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 4 cut(s) 167, 423, 498, 573
BsnI GGCC 2 cut(s) 541, 658
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 210, 367
Bsp143I GATC 4 cut(s) 114, 147, 198, 660
BspANI GGCC 2 cut(s) 541, 658
BspFNI CGCG 3 cut(s) 388, 460, 535
BspLI GGNNCC 4 cut(s) 181, 439, 514, 589
BspMAI CTGCAG 1 cut(s) 265
BspMI ACCTGC 2 cut(s) 254, 457
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 2 cut(s) 368, 604
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 4 cut(s) 282, 386, 458, 533
BssMI GATC 4 cut(s) 114, 147, 198, 660
BssNI GRCGYC 4 cut(s) 180, 427, 502, 577
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 4 cut(s) 110, 432, 507, 582
Bst4CI ACNGT 2 cut(s) 329, 614
BstACI GRCGYC 4 cut(s) 180, 427, 502, 577
BstC8I GCNNGC 3 cut(s) 363, 621, 751
BstDSI CCRYGG 3 cut(s) 386, 458, 533
BstF5I GGATG 3 cut(s) 241, 349, 529
BstFNI CGCG 3 cut(s) 388, 460, 535
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 182, 755
BstKTI GATC 4 cut(s) 117, 150, 201, 663
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 4 cut(s) 114, 147, 198, 660
BstMCI CGRYCG 1 cut(s) 542
BstMWI GCNNNNNNNGC 4 cut(s) 214, 450, 525, 714
BstNI CCWGG 4 cut(s) 110, 432, 507, 582
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 4 cut(s) 108, 430, 505, 580
BstSFI CTRYAG 3 cut(s) 37, 133, 261
BstUI CGCG 3 cut(s) 388, 460, 535
BstV1I GCAGC 2 cut(s) 152, 247
BstV2I GAAGAC 1 cut(s) 330
BstZI CGGCCG 1 cut(s) 539
BsuRI GGCC 2 cut(s) 541, 658
BtgI CCRYGG 3 cut(s) 386, 458, 533
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 3 cut(s) 241, 349, 529
BtsIMutI CAGTG 2 cut(s) 29, 736
BveI ACCTGC 2 cut(s) 254, 457
Cac8I GCNNGC 3 cut(s) 363, 621, 751
CfoI GCGC 2 cut(s) 182, 755
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 3 cut(s) 437, 512, 587
Cfr42I CCGCGG 3 cut(s) 389, 461, 536
CseI GACGC 3 cut(s) 416, 491, 566
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 91, 637
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 631, 760
CviQI GTAC 2 cut(s) 91, 637
DinI GGCGCC 1 cut(s) 181
DpnI GATC 4 cut(s) 116, 149, 200, 662
DpnII GATC 4 cut(s) 114, 147, 198, 660
EaeI YGGCCR 1 cut(s) 539
EagI CGGCCG 1 cut(s) 539
EclXI CGGCCG 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 3 cut(s) 437, 512, 587
Eco52I CGGCCG 1 cut(s) 539
Eco57I CTGAAG 2 cut(s) 5, 29
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 4 cut(s) 108, 430, 505, 580
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 634, 763
FaqI GGGAC 4 cut(s) 167, 423, 498, 573
FatI CATG 2 cut(s) 630, 759
FauI CCCGC 1 cut(s) 722
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 7 cut(s) 166, 261, 389, 461, 464, 536, 539
FokI GGATG 3 cut(s) 248, 356, 516
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 7 cut(s) 166, 261, 389, 461, 464, 536, 539
FspBI CTAG 2 cut(s) 257, 699
GlaI GCGC 2 cut(s) 181, 754
GluI GCNGC 7 cut(s) 166, 261, 389, 461, 464, 536, 539
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 541, 658
HapII CCGG 1 cut(s) 542
HgaI GACGC 3 cut(s) 416, 491, 566
HhaI GCGC 2 cut(s) 182, 755
Hin1I GRCGYC 4 cut(s) 180, 427, 502, 577
Hin1II CATG 2 cut(s) 634, 763
Hin6I GCGC 2 cut(s) 180, 753
HinP1I GCGC 2 cut(s) 180, 753
HinfI GANTC 3 cut(s) 4, 223, 347
HpaII CCGG 1 cut(s) 542
HphI GGTGA 5 cut(s) 124, 341, 406, 481, 556
Hpy166II GTNNAC 5 cut(s) 16, 29, 397, 472, 547
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 4 cut(s) 49, 140, 196, 220
Hpy8I GTNNAC 5 cut(s) 16, 29, 397, 472, 547
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 8 cut(s) 4, 29, 37, 237, 334, 491, 566, 648
HpyCH4III ACNGT 2 cut(s) 329, 614
HpyCH4IV ACGT 2 cut(s) 89, 288
HpyCH4V TGCA 3 cut(s) 168, 263, 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 450, 525, 714
HpySE526I ACGT 2 cut(s) 89, 288
Hsp92I GRCGYC 4 cut(s) 180, 427, 502, 577
Hsp92II CATG 2 cut(s) 634, 763
HspAI GCGC 2 cut(s) 180, 753
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 114
KspI CCGCGG 3 cut(s) 389, 461, 536
Kzo9I GATC 4 cut(s) 114, 147, 198, 660
LmnI GCTCC 2 cut(s) 370, 687
Lsp1109I GCAGC 2 cut(s) 152, 247
LweI GCATC 1 cut(s) 201
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 2 cut(s) 257, 699
MaeII ACGT 2 cut(s) 89, 288
MaeIII GTNAC 7 cut(s) 370, 491, 566, 608, 671, 701, 709
MalI GATC 4 cut(s) 116, 149, 200, 662
MboI GATC 4 cut(s) 114, 147, 198, 660
MboII GAAGA 6 cut(s) 112, 323, 335, 364, 367, 746
MhlI GDGCHC 2 cut(s) 210, 367
MluCI AATT 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 2 cut(s) 217, 356
MnlI CCTC 6 cut(s) 81, 167, 393, 416, 465, 678
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 3 cut(s) 388, 460, 535
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 4 cut(s) 110, 432, 507, 582
MvaI CCWGG 4 cut(s) 110, 432, 507, 582
MvnI CGCG 3 cut(s) 388, 460, 535
MwoI GCNNNNNNNGC 4 cut(s) 214, 450, 525, 714
NarI GGCGCC 1 cut(s) 180
NdeII GATC 4 cut(s) 114, 147, 198, 660
NlaIII CATG 2 cut(s) 634, 763
NlaIV GGNNCC 4 cut(s) 181, 439, 514, 589
NmuCI GTSAC 1 cut(s) 709
NspI RCATGY 1 cut(s) 634
PaqCI CACCTGC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 4
Pfl23II CGTACG 1 cut(s) 90
PkrI GCNGC 7 cut(s) 167, 262, 390, 462, 465, 537, 540
PleI GAGTC 2 cut(s) 217, 355
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 2 cut(s) 217, 355
Psp6I CCWGG 4 cut(s) 108, 430, 505, 580
PspGI CCWGG 4 cut(s) 108, 430, 505, 580
PspLI CGTACG 1 cut(s) 90
PspN4I GGNNCC 4 cut(s) 181, 439, 514, 589
PspPI GGNCC 3 cut(s) 437, 512, 587
PstI CTGCAG 1 cut(s) 265
RsaI GTAC 2 cut(s) 92, 638
RsaNI GTAC 2 cut(s) 91, 637
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 3 cut(s) 389, 461, 536
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 7 cut(s) 166, 261, 389, 461, 464, 536, 539
Sau3AI GATC 4 cut(s) 114, 147, 198, 660
Sau96I GGNCC 3 cut(s) 437, 512, 587
SchI GAGTC 2 cut(s) 217, 356
ScrFI CCNGG 4 cut(s) 110, 432, 507, 582
SduI GDGCHC 2 cut(s) 210, 367
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 3 cut(s) 37, 133, 261
SfoI GGCGCC 1 cut(s) 181
Sfr303I CCGCGG 3 cut(s) 389, 461, 536
SgrBI CCGCGG 3 cut(s) 389, 461, 536
SinI GGWCC 3 cut(s) 437, 512, 587
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 698
Sse9I AATT 1 cut(s) 65
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 2 cut(s) 257, 699
StyD4I CCNGG 4 cut(s) 108, 430, 505, 580
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 329, 614
TaiI ACGT 2 cut(s) 92, 291
TaqI TCGA 2 cut(s) 195, 350
TasI AATT 1 cut(s) 65
TauI GCSGC 5 cut(s) 391, 463, 466, 538, 541
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 29, 736
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 2 cut(s) 165, 260
Tsp45I GTSAC 1 cut(s) 709
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 2 cut(s) 29, 736
VpaK11BI GGWCC 3 cut(s) 437, 512, 587
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 257, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.