RLG00000005325

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000455
Physical Location & Seq
Forward (+)
66796582 .. 66798470
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005325

Sequence Viewer

Length: 924 bp
ATGCGTTGCTTGTTCTCAAGTACGTACTTTCAGCAGAGGTTTAAACCAAAGAGGGAAGTGGTTCTCTATAATGTGACCCCGAAAGTTTTTATCAAGCGTAAGGATTTGGAGAGGGCAGAGAAGCTGTTTTATGAGATACTTGAGAGAAACATCAGATCCCATCTCATCGAGCACTCACTGCTAGCTACAACAATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTCCTCTGTAAATTCCCTCAAATACGAGACCAGGCGTACGACGAGAAGAACAACCGGGTGATCATCAAAGTGGTCTGCTGCTGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCTTCTCCGGCTCCGAAACCTACTCCAGCTCCGGCTCCGAAACCTGCTCCCACTCCGAAACCTGCTCCGGCTCCTGCTCCGAAACCAGCTCCGGCTCCGGCTCCGGCGGCGGTACCTGCTTGCCCTCCGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTGTGGTGCTCCGGCTCCACCTCCTGCGCCGAAACCTGCTCCTTTTCCGGTGCCGGTTCCTGCTTGCCGTCCGCGGCCTGTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACAGATGGCCTGCCCCTTGCACACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGTTACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

308

Amino Acids

33.86

Weight (kDa)

9.17

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 493, 511, 565, 679
Acc65I GGTACC 1 cut(s) 553
AccB1I GGYRCC 3 cut(s) 395, 553, 685
AccI GTMKAC 1 cut(s) 231
AccII CGCG 2 cut(s) 571, 709
AciI CCGC 8 cut(s) 548, 551, 569, 571, 707, 709, 849, 874
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 572
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 2 cut(s) 221, 245
AcyI GRCGYC 3 cut(s) 396, 610, 748
AfaI GTAC 5 cut(s) 22, 26, 308, 555, 809
AjnI CCWGG 3 cut(s) 300, 613, 751
AluBI AGCT 5 cut(s) 124, 185, 376, 470, 530
AluI AGCT 5 cut(s) 124, 185, 376, 470, 530
Alw21I GWGCWC 2 cut(s) 174, 646
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 4 cut(s) 572, 710, 788, 827
ApeKI GCWGC 2 cut(s) 348, 381
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 60
Asp718I GGTACC 1 cut(s) 553
AspLEI GCGC 3 cut(s) 398, 664, 914
AspS9I GGNCC 2 cut(s) 620, 758
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 220, 340, 589
AsuNHI GCTAGC 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 2 cut(s) 620, 758
BanI GGYRCC 3 cut(s) 395, 553, 685
BanII GRGCYC 1 cut(s) 426
Bbv12I GWGCWC 2 cut(s) 174, 646
BbvI GCAGC 2 cut(s) 335, 368
BccI CCATC 4 cut(s) 168, 780, 806, 923
BceAI ACGGC 2 cut(s) 687, 862
BciT130I CCWGG 3 cut(s) 302, 615, 753
BclI TGATCA 1 cut(s) 330
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 399
BfuAI ACCTGC 4 cut(s) 493, 511, 565, 679
BisI GCNGC 5 cut(s) 349, 382, 549, 572, 710
BlsI GCNGC 5 cut(s) 350, 383, 550, 573, 711
Bme1390I CCNGG 4 cut(s) 302, 326, 615, 753
Bme18I GGWCC 2 cut(s) 620, 758
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 620, 758
BmrFI CCNGG 4 cut(s) 302, 326, 615, 753
BmrI ACTGGG 2 cut(s) 642, 780
BmsI GCATC 1 cut(s) 417
BmtI GCTAGC 1 cut(s) 185
BmuI ACTGGG 2 cut(s) 642, 780
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 24
BsaHI GRCGYC 3 cut(s) 396, 610, 748
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 569, 707
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bse118I RCCGGY 3 cut(s) 574, 688, 829
Bse1I ACTGG 2 cut(s) 637, 775
BseBI CCWGG 3 cut(s) 302, 615, 753
BseDI CCNNGG 2 cut(s) 569, 707
BseNI ACTGG 2 cut(s) 637, 775
BseRI GAGGAG 1 cut(s) 871
BseX3I CGGCCG 1 cut(s) 572
BseXI GCAGC 2 cut(s) 335, 368
Bsh1236I CGCG 2 cut(s) 571, 709
Bsh1285I CGRYCG 1 cut(s) 575
BshFI GGCC 4 cut(s) 574, 712, 790, 829
BshNI GGYRCC 3 cut(s) 395, 553, 685
BsiEI CGRYCG 1 cut(s) 575
BsiHKAI GWGCWC 2 cut(s) 174, 646
BsiHKCI CYCGRG 1 cut(s) 425
BsiWI CGTACG 1 cut(s) 306
BslFI GGGAC 3 cut(s) 383, 606, 744
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 3 cut(s) 383, 606, 744
BsnI GGCC 4 cut(s) 574, 712, 790, 829
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 174, 426, 646
Bsp143I GATC 4 cut(s) 155, 330, 363, 414
BspACI CCGC 8 cut(s) 548, 551, 569, 571, 707, 709, 849, 874
BspANI GGCC 4 cut(s) 574, 712, 790, 829
BspFNI CGCG 2 cut(s) 571, 709
BspMI ACCTGC 4 cut(s) 493, 511, 565, 679
BspOI GCTAGC 1 cut(s) 185
BspPI GGATC 1 cut(s) 150
BspT107I GGYRCC 3 cut(s) 395, 553, 685
BspTNI GGTCTC 1 cut(s) 291
BsrFI RCCGGY 3 cut(s) 574, 688, 829
BsrI ACTGG 2 cut(s) 637, 775
BssAI RCCGGY 3 cut(s) 574, 688, 829
BssECI CCNNGG 2 cut(s) 569, 707
BssMI GATC 4 cut(s) 155, 330, 363, 414
BssNI GRCGYC 3 cut(s) 396, 610, 748
Bst2UI CCWGG 3 cut(s) 302, 615, 753
Bst4CI ACNGT 1 cut(s) 807
BstACI GRCGYC 3 cut(s) 396, 610, 748
BstAPI GCANNNNNTGC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 24
BstC8I GCNNGC 5 cut(s) 183, 562, 700, 792, 910
BstDSI CCRYGG 2 cut(s) 569, 707
BstFNI CGCG 2 cut(s) 571, 709
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 3 cut(s) 398, 664, 914
BstKTI GATC 4 cut(s) 158, 333, 366, 417
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 4 cut(s) 155, 330, 363, 414
BstMCI CGRYCG 1 cut(s) 575
BstMWI GCNNNNNNNGC 5 cut(s) 178, 430, 548, 557, 873
BstNI CCWGG 3 cut(s) 302, 615, 753
BstSCI CCNGG 4 cut(s) 300, 324, 613, 751
BstSFI CTRYAG 1 cut(s) 253
BstSNI TACGTA 1 cut(s) 24
BstUI CGCG 2 cut(s) 571, 709
BstV1I GCAGC 2 cut(s) 335, 368
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 572
BsuRI GGCC 4 cut(s) 574, 712, 790, 829
BtgI CCRYGG 2 cut(s) 569, 707
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 3 cut(s) 176, 245, 895
BveI ACCTGC 4 cut(s) 493, 511, 565, 679
Cac8I GCNNGC 5 cut(s) 183, 562, 700, 792, 910
CfoI GCGC 3 cut(s) 398, 664, 914
Cfr10I RCCGGY 3 cut(s) 574, 688, 829
Cfr13I GGNCC 2 cut(s) 620, 758
Cfr42I CCGCGG 2 cut(s) 572, 710
CseI GACGC 2 cut(s) 599, 737
Csp6I GTAC 5 cut(s) 21, 25, 307, 554, 808
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 1 cut(s) 919
CviQI GTAC 5 cut(s) 21, 25, 307, 554, 808
DinI GGCGCC 1 cut(s) 397
DpnI GATC 4 cut(s) 157, 332, 365, 416
DpnII GATC 4 cut(s) 155, 330, 363, 414
DraI TTTAAA 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 572
EagI CGGCCG 1 cut(s) 572
EclXI CGGCCG 1 cut(s) 572
Eco105I TACGTA 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 620, 758
Eco52I CGGCCG 1 cut(s) 572
Eco57I CTGAAG 2 cut(s) 221, 245
Eco88I CYCGRG 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 300, 613, 751
EcoT38I GRGCYC 1 cut(s) 426
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
FaeI CATG 1 cut(s) 922
FaqI GGGAC 3 cut(s) 383, 606, 744
FatI CATG 1 cut(s) 918
FauI CCCGC 1 cut(s) 881
FbaI TGATCA 1 cut(s) 330
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 5 cut(s) 349, 382, 549, 572, 710
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 5 cut(s) 349, 382, 549, 572, 710
FspBI CTAG 1 cut(s) 182
GlaI GCGC 3 cut(s) 397, 663, 913
GluI GCNGC 5 cut(s) 349, 382, 549, 572, 710
GsuI CTGGAG 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 4 cut(s) 574, 712, 790, 829
HgaI GACGC 2 cut(s) 599, 737
HhaI GCGC 3 cut(s) 398, 664, 914
Hin1I GRCGYC 3 cut(s) 396, 610, 748
Hin1II CATG 1 cut(s) 922
Hin6I GCGC 3 cut(s) 396, 662, 912
HinP1I GCGC 3 cut(s) 396, 662, 912
HinfI GANTC 1 cut(s) 220
HphI GGTGA 3 cut(s) 220, 340, 589
Hpy166II GTNNAC 3 cut(s) 232, 580, 718
Hpy188I TCNGA 6 cut(s) 155, 225, 456, 480, 498, 522
Hpy188III TCNNGA 3 cut(s) 265, 356, 412
Hpy8I GTNNAC 3 cut(s) 232, 580, 718
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 7 cut(s) 199, 220, 245, 253, 453, 737, 819
HpyCH4III ACNGT 1 cut(s) 807
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 384, 801
HpyF10VI GCNNNNNNNGC 5 cut(s) 178, 430, 548, 557, 873
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 3 cut(s) 396, 610, 748
Hsp92II CATG 1 cut(s) 922
HspAI GCGC 3 cut(s) 396, 662, 912
KasI GGCGCC 1 cut(s) 395
KpnI GGTACC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 330
KspI CCGCGG 2 cut(s) 572, 710
Kzo9I GATC 4 cut(s) 155, 330, 363, 414
Lsp1109I GCAGC 2 cut(s) 335, 368
LweI GCATC 1 cut(s) 417
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 8 cut(s) 73, 208, 599, 737, 779, 842, 860, 868
MalI GATC 4 cut(s) 157, 332, 365, 416
MboI GATC 4 cut(s) 155, 330, 363, 414
MboII GAAGA 2 cut(s) 328, 905
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 3 cut(s) 174, 426, 646
MluCI AATT 1 cut(s) 281
Mly113I GGCGCC 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 2 cut(s) 42, 402
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 571, 709
MspR9I CCNGG 4 cut(s) 302, 326, 615, 753
MssI GTTTAAAC 1 cut(s) 43
MvaI CCWGG 3 cut(s) 302, 615, 753
MvnI CGCG 2 cut(s) 571, 709
MwoI GCNNNNNNNGC 5 cut(s) 178, 430, 548, 557, 873
NarI GGCGCC 1 cut(s) 396
NciI CCSGG 1 cut(s) 326
NdeII GATC 4 cut(s) 155, 330, 363, 414
NheI GCTAGC 1 cut(s) 181
NlaIII CATG 1 cut(s) 922
NmuCI GTSAC 3 cut(s) 73, 208, 868
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 220
Pfl23II CGTACG 1 cut(s) 306
PkrI GCNGC 5 cut(s) 350, 383, 550, 573, 711
PluTI GGCGCC 1 cut(s) 399
PmeI GTTTAAAC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 300, 613, 751
PspGI CCWGG 3 cut(s) 300, 613, 751
PspLI CGTACG 1 cut(s) 306
PspPI GGNCC 2 cut(s) 620, 758
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 5 cut(s) 22, 26, 308, 555, 809
RsaNI GTAC 5 cut(s) 21, 25, 307, 554, 808
RseI CAYNNNNRTG 1 cut(s) 338
SacII CCGCGG 2 cut(s) 572, 710
SaqAI TTAA 2 cut(s) 42, 402
SatI GCNGC 5 cut(s) 349, 382, 549, 572, 710
Sau3AI GATC 4 cut(s) 155, 330, 363, 414
Sau96I GGNCC 2 cut(s) 620, 758
ScrFI CCNGG 4 cut(s) 302, 326, 615, 753
SduI GDGCHC 3 cut(s) 174, 426, 646
SfaNI GCATC 1 cut(s) 417
SfcI CTRYAG 1 cut(s) 253
SfoI GGCGCC 1 cut(s) 397
Sfr303I CCGCGG 2 cut(s) 572, 710
SgrBI CCGCGG 2 cut(s) 572, 710
SinI GGWCC 2 cut(s) 620, 758
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 16, 140
SmoI CTYRAG 2 cut(s) 16, 140
SnaBI TACGTA 1 cut(s) 24
Sse9I AATT 1 cut(s) 281
SsiI CCGC 8 cut(s) 548, 551, 569, 571, 707, 709, 849, 874
SspDI GGCGCC 1 cut(s) 395
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 4 cut(s) 300, 324, 613, 751
TaaI ACNGT 1 cut(s) 807
TaiI ACGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 168, 411
TasI AATT 1 cut(s) 281
TauI GCSGC 3 cut(s) 551, 574, 712
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 42, 402
Tru9I TTAA 2 cut(s) 42, 402
TscAI CASTG 3 cut(s) 183, 245, 895
TseFI GTSAC 3 cut(s) 73, 208, 868
TseI GCWGC 2 cut(s) 348, 381
Tsp45I GTSAC 3 cut(s) 73, 208, 868
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 3 cut(s) 183, 245, 895
VpaK11BI GGWCC 2 cut(s) 620, 758
XapI RAATTY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.