MD10G1337500.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
41350535 .. 41351718
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1337500.v1.1.491

Sequence Viewer

Length: 636 bp
ATGATTCTTCCCAGTCAGTCAGTTACGATTATGGTGCTGAAGGTGGATCTTCAGTGTCACAAATGCTACAAGAAAGTCAAAAAAGTTCTTTGTAAATTCCCTCAAATACGAGACCAGATATACGACGAGAAGCAAAACCAAGTGGTGATCAAAGTGGTATGCTGTAGTCCAGAAAAGATAAGAGACAAGATTTGCTGCAAAGGTGGAGGTGCCATAAAAAGCATCGAGATCAAAGAGCCAGAGAAGCCCAAGCCACCGCCGCCGGTTGAGAAACCACCTCCCGAAAAACCTAAACCGGCTCCACCGCCTCCCGAAAAACCTAAACCGGCTCCACCGCCTCCCGAAAAGCCTAAACCACCTCCTGAAAAACCTAAACCACCGGTGGAGCCAGTGAAGCCTTGTCCTCCTCCTATGCAGCCGGTTCCTTGTGTGCCAGGGTACCCACCGCCTGTCCGAACATGTTGTACGGATTGTTACCATGGGCATGCAGGTGGGCCATGCTACAGTGGTTATGGTGGGGGACCACCCCCGTACATCCAGTATGATGGTTACTATGGGAGGCCAGTGTATGACAGTTACGGCGGTGGCAGCAGGGGGTATTGTGAAGAAAATCCCTCAGCTTGCACAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

212

Amino Acids

23.09

Weight (kDa)

8.93

Isoelectric Point (pI)

66.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 479
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 2 cut(s) 209, 438
AciI CCGC 6 cut(s) 257, 260, 305, 335, 446, 582
AclWI GGATC 1 cut(s) 54
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 2 cut(s) 35, 59
AfaI GTAC 3 cut(s) 440, 466, 533
AflIII ACRYGT 1 cut(s) 458
AgeI ACCGGT 1 cut(s) 379
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 1 cut(s) 620
AluI AGCT 1 cut(s) 620
Alw26I GTCTC 2 cut(s) 105, 177
AlwI GGATC 1 cut(s) 54
AoxI GGCC 2 cut(s) 494, 560
ApeKI GCWGC 3 cut(s) 195, 415, 588
ApoI RAATTY 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 379
Asp718I GGTACC 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 494, 521
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 521
BanI GGYRCC 2 cut(s) 209, 438
BbvCI CCTCAGC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 182, 427, 600
BccI CCATC 1 cut(s) 539
BceAI ACGGC 1 cut(s) 595
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 1 cut(s) 435
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 105, 177
BfmI CTRYAG 2 cut(s) 163, 502
BfuAI ACCTGC 1 cut(s) 479
BisI GCNGC 4 cut(s) 196, 260, 416, 589
BlsI GCNGC 4 cut(s) 197, 261, 417, 590
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 494, 521
BmiI GGNNCC 7 cut(s) 211, 300, 330, 387, 423, 440, 522
BmrFI CCNGG 1 cut(s) 435
BmrI ACTGGG 1 cut(s) 6
BmsI GCATC 1 cut(s) 231
BmuI ACTGGG 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 434, 478
BsaWI WCCGGW 1 cut(s) 379
Bse118I RCCGGY 5 cut(s) 262, 295, 325, 379, 418
Bse1I ACTGG 4 cut(s) 12, 389, 538, 563
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 434, 478
BseGI GGATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 4 cut(s) 12, 389, 538, 563
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 3 cut(s) 182, 427, 600
BshFI GGCC 2 cut(s) 496, 562
BshNI GGYRCC 2 cut(s) 209, 438
BshTI ACCGGT 1 cut(s) 379
BsiSI CCGG 5 cut(s) 263, 296, 326, 380, 419
BslFI GGGAC 1 cut(s) 534
BsmAI GTCTC 2 cut(s) 105, 177
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 2 cut(s) 496, 562
Bso31I GGTCTC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 46, 147, 228
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 6 cut(s) 257, 260, 305, 335, 446, 582
BspANI GGCC 2 cut(s) 496, 562
BspCNI CTCAG 1 cut(s) 629
BspLI GGNNCC 7 cut(s) 211, 300, 330, 387, 423, 440, 522
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 209, 438
BspTNI GGTCTC 1 cut(s) 105
BsrFI RCCGGY 5 cut(s) 262, 295, 325, 379, 418
BsrI ACTGG 4 cut(s) 12, 389, 538, 563
BssAI RCCGGY 5 cut(s) 262, 295, 325, 379, 418
BssECI CCNNGG 2 cut(s) 434, 478
BssMI GATC 3 cut(s) 46, 147, 228
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 3 cut(s) 506, 575, 628
BstC8I GCNNGC 2 cut(s) 486, 622
BstDEI CTNAG 1 cut(s) 616
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 1 cut(s) 534
BstKTI GATC 3 cut(s) 49, 150, 231
BstMAI GTCTC 2 cut(s) 105, 177
BstMBI GATC 3 cut(s) 46, 147, 228
BstMWI GCNNNNNNNGC 4 cut(s) 244, 259, 394, 588
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 2 cut(s) 462, 488
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 2 cut(s) 163, 502
BstV1I GCAGC 3 cut(s) 182, 427, 600
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 2 cut(s) 496, 562
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 1 cut(s) 534
BtsIMutI CAGTG 4 cut(s) 59, 396, 511, 570
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 2 cut(s) 486, 622
Cfr10I RCCGGY 5 cut(s) 262, 295, 325, 379, 418
Cfr13I GGNCC 2 cut(s) 494, 521
Csp6I GTAC 3 cut(s) 439, 465, 532
CspAI ACCGGT 1 cut(s) 379
CviAII CATG 5 cut(s) 459, 479, 485, 498, 631
CviQI GTAC 3 cut(s) 439, 465, 532
DdeI CTNAG 1 cut(s) 616
DpnI GATC 3 cut(s) 48, 149, 230
DpnII GATC 3 cut(s) 46, 147, 228
Eco130I CCWWGG 1 cut(s) 478
Eco31I GGTCTC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 2 cut(s) 35, 59
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 5 cut(s) 462, 482, 488, 501, 634
FaqI GGGAC 1 cut(s) 534
FatI CATG 5 cut(s) 458, 478, 484, 497, 630
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 4 cut(s) 196, 260, 416, 589
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 4 cut(s) 196, 260, 416, 589
GluI GCNGC 4 cut(s) 196, 260, 416, 589
HaeIII GGCC 2 cut(s) 496, 562
HapII CCGG 5 cut(s) 263, 296, 326, 380, 419
Hin1II CATG 5 cut(s) 462, 482, 488, 501, 634
HinfI GANTC 1 cut(s) 4
HpaII CCGG 5 cut(s) 263, 296, 326, 380, 419
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 455
Hpy188III TCNNGA 6 cut(s) 170, 226, 281, 311, 341, 362
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 3 cut(s) 506, 575, 628
HpyCH4V TGCA 4 cut(s) 198, 415, 488, 624
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 259, 394, 588
HpyF3I CTNAG 1 cut(s) 616
Hsp92II CATG 5 cut(s) 462, 482, 488, 501, 634
KpnI GGTACC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 46, 147, 228
LmnI GCTCC 3 cut(s) 304, 334, 385
Lsp1109I GCAGC 3 cut(s) 182, 427, 600
LweI GCATC 1 cut(s) 231
MaeIII GTNAC 5 cut(s) 22, 56, 473, 548, 575
MalI GATC 3 cut(s) 48, 149, 230
MboI GATC 3 cut(s) 46, 147, 228
MboII GAAGA 2 cut(s) 41, 617
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 95
MslI CAYNNNNRTG 3 cut(s) 483, 489, 629
MspI CCGG 5 cut(s) 263, 296, 326, 380, 419
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 4 cut(s) 244, 259, 394, 588
NcoI CCATGG 1 cut(s) 478
NdeII GATC 3 cut(s) 46, 147, 228
NlaIII CATG 5 cut(s) 462, 482, 488, 501, 634
NlaIV GGNNCC 7 cut(s) 211, 300, 330, 387, 423, 440, 522
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 2 cut(s) 462, 488
PaeI GCATGC 1 cut(s) 488
PaqCI CACCTGC 1 cut(s) 479
PciI ACATGT 1 cut(s) 458
PfeI GAWTC 1 cut(s) 4
PinAI ACCGGT 1 cut(s) 379
PkrI GCNGC 4 cut(s) 197, 261, 417, 590
PscI ACATGT 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 7 cut(s) 211, 300, 330, 387, 423, 440, 522
PspPI GGNCC 2 cut(s) 494, 521
PsrI GAACNNNNNNTAC 2 cut(s) 448, 480
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 3 cut(s) 440, 466, 533
RsaNI GTAC 3 cut(s) 439, 465, 532
RseI CAYNNNNRTG 3 cut(s) 483, 489, 629
SatI GCNGC 4 cut(s) 196, 260, 416, 589
Sau3AI GATC 3 cut(s) 46, 147, 228
Sau96I GGNCC 2 cut(s) 494, 521
ScrFI CCNGG 1 cut(s) 435
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 2 cut(s) 163, 502
SgrAI CRCCGGYG 1 cut(s) 379
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 3 cut(s) 483, 489, 629
SphI GCATGC 1 cut(s) 488
Sse9I AATT 1 cut(s) 95
SsiI CCGC 6 cut(s) 257, 260, 305, 335, 446, 582
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 3 cut(s) 506, 575, 628
TaqI TCGA 1 cut(s) 225
TasI AATT 1 cut(s) 95
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 4 cut(s) 59, 396, 511, 570
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 195, 415, 588
Tsp45I GTSAC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 4 cut(s) 59, 396, 511, 570
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 1 cut(s) 95
XceI RCATGY 2 cut(s) 462, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.