RLG00000017130

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000455
Physical Location & Seq
Forward (+)
13102840 .. 13104186
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017130

Sequence Viewer

Length: 876 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCACAAATACGAGACCAGAAGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGTTGTGGCGTCATTAAGTGCATCGAGATCATAGAGCCTCCGCCTCCGCCTCCGCCTCCGCCTAAGCAATCTGAACCGCCTCCCCCTCCGCCTCAGAAATCTGAACCGCCTCCGCCTCCGCCTCAGAAATCTGAACCGCCTCCGCCTCCGCCTAAGAAATCTGAACCCCCTCCGCCTCCGCCTCCTCCTCCCCCTCCCCCTCAGCCTCCTTGCCTTTGCCCTTGCCCTTGCCCTTGCCCTTGCCCTTGCCGGCGGGTGAAACAGTGTAGTTCGGATTGTAACGAAGGGCGTCGTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGCATACGTGTTGCTCGGATTGTTACGAAGGGCGTCGTGGTGGTCCCTGCGAAACTCACCCTCCGCGGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGGCGTCCTGGTGGTCCTTGCGAAACTTACCCTCCGCCGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGGCGTCCCGGCGGTCCCTGCGAAACTGGGTATGGTTATGGTGGGCCTGTCCCTTACATACAGTATGGAAGGCCGGTGTATGATATTTACGGCGGTGGGAGGAGCCATACTACCAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

292

Amino Acids

31.94

Weight (kDa)

8.19

Isoelectric Point (pI)

77.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 589
AcoI YGGCCR 2 cut(s) 518, 590
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcvI CACGTG 2 cut(s) 603, 675
AcyI GRCGYC 5 cut(s) 204, 484, 556, 628, 700
AfaI GTAC 3 cut(s) 116, 610, 682
AflIII ACRYGT 5 cut(s) 530, 600, 602, 672, 674
AjnI CCWGG 2 cut(s) 132, 631
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 816
AoxI GGCC 4 cut(s) 518, 590, 740, 767
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 1 cut(s) 866
AspS9I GGNCC 5 cut(s) 494, 566, 638, 710, 740
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 6 cut(s) 28, 148, 463, 572, 607, 679
AvaII GGWCC 4 cut(s) 494, 566, 638, 710
BbrPI CACGTG 2 cut(s) 603, 675
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 1 cut(s) 875
BceAI ACGGC 1 cut(s) 802
BciT130I CCWGG 2 cut(s) 134, 633
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 99
BfmI CTRYAG 2 cut(s) 61, 157
BisI GCNGC 5 cut(s) 157, 190, 518, 590, 662
BlsI GCNGC 5 cut(s) 158, 191, 519, 591, 663
Bme1390I CCNGG 3 cut(s) 134, 633, 705
Bme18I GGWCC 4 cut(s) 494, 566, 638, 710
BmgT120I GGNCC 5 cut(s) 494, 566, 638, 710, 740
BmiI GGNNCC 4 cut(s) 496, 568, 712, 800
BmrFI CCNGG 3 cut(s) 134, 633, 705
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 732
Bpu10I CCTNAGC 2 cut(s) 258, 396
BpuMI CCSGG 1 cut(s) 705
BsaAI YACGTR 3 cut(s) 531, 603, 675
BsaHI GRCGYC 5 cut(s) 204, 484, 556, 628, 700
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 512, 587
BsaXI ACNNNNNCTCC 4 cut(s) 568, 598, 640, 670
Bse118I RCCGGY 5 cut(s) 444, 520, 592, 664, 769
Bse1I ACTGG 2 cut(s) 727, 810
BseBI CCWGG 2 cut(s) 134, 633
BseDI CCNNGG 2 cut(s) 512, 587
BseMII CTCAG 3 cut(s) 302, 332, 410
BseNI ACTGG 2 cut(s) 727, 810
BseRI GAGGAG 3 cut(s) 369, 372, 811
BseX3I CGGCCG 2 cut(s) 518, 590
BseXI GCAGC 2 cut(s) 143, 176
Bsh1236I CGCG 1 cut(s) 589
Bsh1285I CGRYCG 2 cut(s) 521, 593
BshFI GGCC 4 cut(s) 520, 592, 742, 769
BsiEI CGRYCG 2 cut(s) 521, 593
BsiSI CCGG 6 cut(s) 445, 521, 593, 665, 705, 770
BslFI GGGAC 6 cut(s) 191, 480, 552, 687, 696, 731
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 6 cut(s) 191, 480, 552, 687, 696, 731
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 4 cut(s) 520, 592, 742, 769
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 138, 171, 222
BspANI GGCC 4 cut(s) 520, 592, 742, 769
BspCNI CTCAG 3 cut(s) 301, 331, 409
BspFNI CGCG 1 cut(s) 589
BspLI GGNNCC 4 cut(s) 496, 568, 712, 800
BspMAI CTGCAG 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 5 cut(s) 444, 520, 592, 664, 769
BsrI ACTGG 2 cut(s) 727, 810
BssAI RCCGGY 5 cut(s) 444, 520, 592, 664, 769
BssECI CCNNGG 2 cut(s) 512, 587
BssMI GATC 3 cut(s) 138, 171, 222
BssNI GRCGYC 5 cut(s) 204, 484, 556, 628, 700
Bst2UI CCWGG 2 cut(s) 134, 633
Bst4CI ACNGT 2 cut(s) 459, 759
BstACI GRCGYC 5 cut(s) 204, 484, 556, 628, 700
BstBAI YACGTR 3 cut(s) 531, 603, 675
BstC8I GCNNGC 2 cut(s) 446, 862
BstDEI CTNAG 5 cut(s) 258, 288, 318, 348, 396
BstDSI CCRYGG 1 cut(s) 587
BstFNI CGCG 1 cut(s) 589
BstHHI GCGC 1 cut(s) 866
BstKTI GATC 3 cut(s) 141, 174, 225
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 138, 171, 222
BstMCI CGRYCG 2 cut(s) 521, 593
BstMWI GCNNNNNNNGC 3 cut(s) 523, 714, 825
BstNI CCWGG 2 cut(s) 134, 633
BstSCI CCNGG 3 cut(s) 132, 631, 703
BstSFI CTRYAG 2 cut(s) 61, 157
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 143, 176
BstZI CGGCCG 2 cut(s) 518, 590
BsuRI GGCC 4 cut(s) 520, 592, 742, 769
BtgI CCRYGG 1 cut(s) 587
BtsIMutI CAGTG 3 cut(s) 53, 464, 847
Cac8I GCNNGC 2 cut(s) 446, 862
CaiI CAGNNNCTG 1 cut(s) 816
CfoI GCGC 1 cut(s) 866
Cfr10I RCCGGY 5 cut(s) 444, 520, 592, 664, 769
Cfr13I GGNCC 5 cut(s) 494, 566, 638, 710, 740
Cfr42I CCGCGG 1 cut(s) 590
CseI GACGC 5 cut(s) 193, 473, 545, 617, 689
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 3 cut(s) 115, 609, 681
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 871
CviJI RGCY 8 cut(s) 184, 232, 400, 520, 592, 742, 769, 801
CviKI_1 RGCY 8 cut(s) 184, 232, 400, 520, 592, 742, 769, 801
CviQI GTAC 3 cut(s) 115, 609, 681
DdeI CTNAG 5 cut(s) 258, 288, 318, 348, 396
DpnI GATC 3 cut(s) 140, 173, 224
DpnII GATC 3 cut(s) 138, 171, 222
EaeI YGGCCR 2 cut(s) 518, 590
EagI CGGCCG 2 cut(s) 518, 590
EclXI CGGCCG 2 cut(s) 518, 590
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 4 cut(s) 494, 566, 638, 710
Eco52I CGGCCG 2 cut(s) 518, 590
Eco57I CTGAAG 2 cut(s) 29, 53
Eco72I CACGTG 2 cut(s) 603, 675
EcoRII CCWGG 2 cut(s) 132, 631
FaeI CATG 1 cut(s) 874
FaqI GGGAC 6 cut(s) 191, 480, 552, 687, 696, 731
FatI CATG 1 cut(s) 870
FauI CCCGC 2 cut(s) 441, 833
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 5 cut(s) 157, 190, 518, 590, 662
Fsp4HI GCNGC 5 cut(s) 157, 190, 518, 590, 662
GlaI GCGC 1 cut(s) 865
GluI GCNGC 5 cut(s) 157, 190, 518, 590, 662
HaeIII GGCC 4 cut(s) 520, 592, 742, 769
HapII CCGG 6 cut(s) 445, 521, 593, 665, 705, 770
HgaI GACGC 5 cut(s) 193, 473, 545, 617, 689
HhaI GCGC 1 cut(s) 866
Hin1I GRCGYC 5 cut(s) 204, 484, 556, 628, 700
Hin1II CATG 1 cut(s) 874
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 28
HpaII CCGG 6 cut(s) 445, 521, 593, 665, 705, 770
HphI GGTGA 6 cut(s) 28, 148, 463, 572, 607, 679
Hpy166II GTNNAC 3 cut(s) 40, 598, 670
Hpy188I TCNGA 9 cut(s) 33, 268, 291, 298, 321, 328, 358, 469, 541
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy8I GTNNAC 3 cut(s) 40, 598, 670
Hpy99I CGWCG 3 cut(s) 122, 489, 561
HpyAV CCTTC 9 cut(s) 7, 28, 53, 61, 473, 545, 617, 689, 759
HpyCH4III ACNGT 2 cut(s) 459, 759
HpyCH4IV ACGT 3 cut(s) 530, 602, 674
HpyCH4V TGCA 4 cut(s) 159, 192, 216, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 523, 714, 825
HpyF3I CTNAG 5 cut(s) 258, 288, 318, 348, 396
HpySE526I ACGT 3 cut(s) 530, 602, 674
Hsp92I GRCGYC 5 cut(s) 204, 484, 556, 628, 700
Hsp92II CATG 1 cut(s) 874
HspAI GCGC 1 cut(s) 864
KroI GCCGGC 1 cut(s) 444
KroNI GCCGGC 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 1 cut(s) 590
Kzo9I GATC 3 cut(s) 138, 171, 222
LmnI GCTCC 1 cut(s) 798
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeII ACGT 3 cut(s) 530, 602, 674
MaeIII GTNAC 7 cut(s) 16, 473, 545, 617, 689, 812, 820
MalI GATC 3 cut(s) 140, 173, 224
MboI GATC 3 cut(s) 138, 171, 222
MboII GAAGA 2 cut(s) 136, 857
MluCI AATT 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 444
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 6 cut(s) 445, 521, 593, 665, 705, 770
MspR9I CCNGG 3 cut(s) 134, 633, 705
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 2 cut(s) 134, 633
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 3 cut(s) 523, 714, 825
NaeI GCCGGC 1 cut(s) 446
NciI CCSGG 1 cut(s) 705
NdeII GATC 3 cut(s) 138, 171, 222
NgoMIV GCCGGC 1 cut(s) 444
NlaIII CATG 1 cut(s) 874
NlaIV GGNNCC 4 cut(s) 496, 568, 712, 800
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 16, 820
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 5 cut(s) 158, 191, 519, 591, 663
PmaCI CACGTG 2 cut(s) 603, 675
PmlI CACGTG 2 cut(s) 603, 675
Ppu21I YACGTR 3 cut(s) 531, 603, 675
Psp6I CCWGG 2 cut(s) 132, 631
PspCI CACGTG 2 cut(s) 603, 675
PspGI CCWGG 2 cut(s) 132, 631
PspN4I GGNNCC 4 cut(s) 496, 568, 712, 800
PspPI GGNCC 5 cut(s) 494, 566, 638, 710, 740
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 816
RsaI GTAC 3 cut(s) 116, 610, 682
RsaNI GTAC 3 cut(s) 115, 609, 681
RseI CAYNNNNRTG 1 cut(s) 146
SacII CCGCGG 1 cut(s) 590
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 5 cut(s) 157, 190, 518, 590, 662
Sau3AI GATC 3 cut(s) 138, 171, 222
Sau96I GGNCC 5 cut(s) 494, 566, 638, 710, 740
ScrFI CCNGG 3 cut(s) 134, 633, 705
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 2 cut(s) 61, 157
Sfr303I CCGCGG 1 cut(s) 590
SgrAI CRCCGGYG 1 cut(s) 664
SgrBI CCGCGG 1 cut(s) 590
SinI GGWCC 4 cut(s) 494, 566, 638, 710
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 132, 631, 703
TaaI ACNGT 2 cut(s) 459, 759
TaiI ACGT 3 cut(s) 533, 605, 677
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 3 cut(s) 520, 592, 664
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 3 cut(s) 53, 464, 847
TseFI GTSAC 2 cut(s) 16, 820
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 820
TspGWI ACGGA 2 cut(s) 626, 698
TspRI CASTG 3 cut(s) 53, 464, 847
VpaK11BI GGWCC 4 cut(s) 494, 566, 638, 710
XapI RAATTY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.