Rmu_sc0012465.1_g000001

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012465.1
OG0000455
Physical Location & Seq
Forward (+)
958 .. 2000
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012465.1_g000001.1.cds

Sequence Viewer

Length: 522 bp
atgggggaaaaggaaaaggtgacgataatgattctgaaggtggaccttcagtgtgaaaaatgctacaggaaggtcaagaaagttctcagtaaattccctcaaatacgagaccagacgtacgacgagaagaacaacctggtgatcatcaaagtggtctgctgcagtcctgaaaagatcagggacaagctatgctgcaaaggaggtggcgccattaagagcatcgagatcaaagtgcccgagaagcccaagcctcctcctccaaaggagccggagaagcctaaagatcagaaacccaaggagccggagaagcctaaagagaaaccaaaggagccggagaagcctaaagagaaaccaaaggagcaaccaaaggagccggagaagccaaaagagcaaccaaaggcgccggagaagcctaaagagcaaccaaaggagccggagaagcctaaagagaaacccaaagagcccgagaagccgaaggaagctccacctgtggtgatggttaacccgtgttgtatggaatgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

174

Amino Acids

20.04

Weight (kDa)

9.22

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 400
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcyI GRCGYC 2 cut(s) 207, 401
AfaI GTAC 1 cut(s) 119
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 2 cut(s) 187, 482
AluI AGCT 2 cut(s) 187, 482
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 2 cut(s) 236, 464
ApeKI GCWGC 2 cut(s) 159, 192
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 209, 403
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 31, 151, 505
AvaI CYCGRG 2 cut(s) 236, 464
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 2 cut(s) 206, 400
BanII GRGCYC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 146, 179
BccI CCATC 1 cut(s) 490
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 2 cut(s) 64, 160
BfoI RGCGCY 2 cut(s) 210, 404
BisI GCNGC 2 cut(s) 160, 193
BlsI GCNGC 2 cut(s) 161, 194
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 2 cut(s) 236, 464
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 7 cut(s) 208, 267, 300, 330, 372, 402, 432
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 228
BsaHI GRCGYC 2 cut(s) 207, 401
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 243, 246
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 146, 179
BshNI GGYRCC 2 cut(s) 206, 400
BsiHKCI CYCGRG 2 cut(s) 236, 464
BsiSI CCGG 6 cut(s) 269, 302, 332, 374, 404, 434
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 2 cut(s) 236, 464
Bsp1286I GDGCHC 2 cut(s) 237, 465
Bsp143I GATC 4 cut(s) 141, 174, 225, 283
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 7 cut(s) 208, 267, 300, 330, 372, 402, 432
BspMAI CTGCAG 1 cut(s) 164
BspT107I GGYRCC 2 cut(s) 206, 400
BspTNI GGTCTC 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 4 cut(s) 141, 174, 225, 283
BssNI GRCGYC 2 cut(s) 207, 401
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 137
BstACI GRCGYC 2 cut(s) 207, 401
BstDEI CTNAG 1 cut(s) 86
BstH2I RGCGCY 2 cut(s) 210, 404
BstHHI GCGC 2 cut(s) 209, 403
BstKTI GATC 4 cut(s) 144, 177, 228, 286
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 141, 174, 225, 283
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 2 cut(s) 64, 160
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 146, 179
BtsIMutI CAGTG 1 cut(s) 56
CfoI GCGC 2 cut(s) 209, 403
Cfr13I GGNCC 1 cut(s) 43
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 2 cut(s) 208, 402
DpnI GATC 4 cut(s) 143, 176, 227, 285
DpnII GATC 4 cut(s) 141, 174, 225, 283
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 2 cut(s) 236, 464
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 465
EgeI GGCGCC 2 cut(s) 208, 402
EheI GGCGCC 2 cut(s) 208, 402
ErhI CCWWGG 1 cut(s) 294
FaiI YATR 2 cut(s) 190, 515
FaqI GGGAC 1 cut(s) 194
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 160, 193
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 2 cut(s) 160, 193
GlaI GCGC 2 cut(s) 208, 402
GluI GCNGC 2 cut(s) 160, 193
HaeII RGCGCY 2 cut(s) 210, 404
HapII CCGG 6 cut(s) 269, 302, 332, 374, 404, 434
HhaI GCGC 2 cut(s) 209, 403
Hin1I GRCGYC 2 cut(s) 207, 401
Hin6I GCGC 2 cut(s) 207, 401
HinP1I GCGC 2 cut(s) 207, 401
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 6 cut(s) 269, 302, 332, 374, 404, 434
HphI GGTGA 3 cut(s) 31, 151, 505
Hpy166II GTNNAC 2 cut(s) 43, 502
Hpy188I TCNGA 2 cut(s) 36, 288
Hpy188III TCNNGA 3 cut(s) 76, 167, 223
Hpy8I GTNNAC 2 cut(s) 43, 502
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 31, 56, 64, 469
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 162, 195
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 2 cut(s) 207, 401
HspAI GCGC 2 cut(s) 207, 401
KasI GGCGCC 2 cut(s) 206, 400
Ksp22I TGATCA 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 4 cut(s) 141, 174, 225, 283
LmnI GCTCC 7 cut(s) 265, 298, 328, 358, 370, 430, 487
Lsp1109I GCAGC 2 cut(s) 146, 179
LweI GCATC 1 cut(s) 228
MabI ACCWGGT 1 cut(s) 135
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 19
MalI GATC 4 cut(s) 143, 176, 227, 285
MboI GATC 4 cut(s) 141, 174, 225, 283
MboII GAAGA 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 237, 465
MluCI AATT 1 cut(s) 92
Mly113I GGCGCC 2 cut(s) 207, 401
MnlI CCTC 5 cut(s) 108, 194, 261, 264, 267
MseI TTAA 2 cut(s) 213, 501
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 6 cut(s) 269, 302, 332, 374, 404, 434
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
NarI GGCGCC 2 cut(s) 207, 401
NdeII GATC 4 cut(s) 141, 174, 225, 283
NlaIV GGNNCC 7 cut(s) 208, 267, 300, 330, 372, 402, 432
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 2 cut(s) 161, 194
PluTI GGCGCC 2 cut(s) 210, 404
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 7 cut(s) 208, 267, 300, 330, 372, 402, 432
PspPI GGNCC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 213, 501
SatI GCNGC 2 cut(s) 160, 193
Sau3AI GATC 4 cut(s) 141, 174, 225, 283
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 2 cut(s) 237, 465
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 2 cut(s) 64, 160
SfoI GGCGCC 2 cut(s) 208, 402
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 1 cut(s) 92
SspDI GGCGCC 2 cut(s) 206, 400
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 294
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 213, 501
Tru9I TTAA 2 cut(s) 213, 501
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 159, 192
Tsp45I GTSAC 1 cut(s) 19
TspRI CASTG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.