MD05G1360500.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000455
Physical Location & Seq
Reverse (-)
47644339 .. 47646264
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1360500.v1.1.491

Sequence Viewer

Length: 777 bp
ATGGGGGAAAAGGAAAAGGTTACGATTATGGTGTTGAAGGTGGATCTTGGGTGTCACAAATGCTATAAGAAGGTCAAAAAAGTTCTCTGTAAATTCCCCCAAATACGAGACCAGATATACGACGAGAAGCAAAACCAAGTGGTGATCAAAGTGGTATGCTGTAGTCCAGAAAAGATAAGGGACAAGATTTGCTGCAAAGGTGGAGGTGCCATAAAAAGCATTGAGATCAAAGAGCCAGAGAAGCCCAAGCCACCACCGGCCGAGAAACCCAAAGAGCCCGAAAAACCTAAACCGGCAGAGAAACCCAAAGTGCCCGAAAAACCTAAACCGACGACTGAGAAACCCAAAGAGCCTGAAAAACCTAAACCGGCAGAGAAACCCAAAGAGCCTGAAAAACCTAAACCGGCAGATAAACCCAAGGAACCTGAAAATCCTAAACCTGCACCGCCACCAGCGGAGCCAGTGAAACCGCCAAAACCTGCACCGCCACCGGCTGAGCCAGTGAAGCCTTCTCCTCCTCCAGTGCAGCCGGGTCCTGTTGTGCCAGGGTACCCACCGCCTGTCCAAGTAAACGCGTGTTGTATGGATTGTTACCAGGGGCATCCAGGTGGGCCATGCTACAATGGTTATGGCGGTGGGCCTGCCCCATACATACAATATGATGGTTACTATGGAAGACCTGTGTATGACAGTTACGGCGGTGGAAACAGAAGCTACTGTGTTACCCGCCCTGATTGTTTCAGTGAAGAAAATCCCTCAGCTTGCACAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

259

Amino Acids

28.28

Weight (kDa)

8.95

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 448, 487
Acc65I GGTACC 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 206, 549
AccII CGCG 1 cut(s) 575
AciI CCGC 8 cut(s) 446, 455, 470, 485, 557, 633, 699, 727
AclWI GGATC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 3 cut(s) 544, 594, 604
AluBI AGCT 2 cut(s) 714, 761
AluI AGCT 2 cut(s) 714, 761
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 51
AoxI GGCC 3 cut(s) 258, 611, 638
ApeKI GCWGC 2 cut(s) 192, 526
ApoI RAATTY 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 549
AspS9I GGNCC 3 cut(s) 533, 611, 638
AsuC2I CCSGG 1 cut(s) 531
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 2 cut(s) 206, 549
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 682
BbvCI CCTCAGC 1 cut(s) 757
BbvI GCAGC 2 cut(s) 179, 538
BccI CCATC 1 cut(s) 656
BceAI ACGGC 1 cut(s) 712
BciT130I CCWGG 3 cut(s) 546, 596, 606
BclI TGATCA 1 cut(s) 144
BcnI CCSGG 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 160
BfuAI ACCTGC 2 cut(s) 448, 487
BisI GCNGC 2 cut(s) 193, 527
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 2 cut(s) 194, 528
Bme1390I CCNGG 4 cut(s) 531, 546, 596, 606
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 3 cut(s) 533, 611, 638
BmiI GGNNCC 5 cut(s) 208, 423, 459, 534, 551
BmrFI CCNGG 4 cut(s) 531, 546, 596, 606
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 682
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 757
Bpu1102I GCTNAGC 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 417, 545, 595
Bse118I RCCGGY 5 cut(s) 256, 292, 367, 403, 490
Bse1I ACTGG 3 cut(s) 461, 500, 521
BseBI CCWGG 3 cut(s) 546, 596, 606
BseDI CCNNGG 3 cut(s) 417, 545, 595
BseGI GGATG 1 cut(s) 601
BseMII CTCAG 3 cut(s) 327, 486, 771
BseNI ACTGG 3 cut(s) 461, 500, 521
BseRI GAGGAG 2 cut(s) 504, 507
BseSI GKGCMC 1 cut(s) 315
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 179, 538
BsgI GTGCAG 3 cut(s) 426, 465, 545
Bsh1236I CGCG 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 260, 613, 640
BshNI GGYRCC 2 cut(s) 206, 549
BsiEI CGRYCG 1 cut(s) 261
BsiSI CCGG 6 cut(s) 257, 293, 368, 404, 491, 530
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 3 cut(s) 260, 613, 640
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 279, 315
Bsp143I GATC 3 cut(s) 43, 144, 225
Bsp1720I GCTNAGC 1 cut(s) 495
BspACI CCGC 8 cut(s) 446, 455, 470, 485, 557, 633, 699, 727
BspANI GGCC 3 cut(s) 260, 613, 640
BspCNI CTCAG 3 cut(s) 328, 487, 770
BspFNI CGCG 1 cut(s) 575
BspLI GGNNCC 5 cut(s) 208, 423, 459, 534, 551
BspMI ACCTGC 2 cut(s) 448, 487
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 206, 549
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 5 cut(s) 256, 292, 367, 403, 490
BsrI ACTGG 3 cut(s) 461, 500, 521
BssAI RCCGGY 5 cut(s) 256, 292, 367, 403, 490
BssECI CCNNGG 3 cut(s) 417, 545, 595
BssMI GATC 3 cut(s) 43, 144, 225
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 3 cut(s) 546, 596, 606
Bst4CI ACNGT 3 cut(s) 692, 719, 769
BstC8I GCNNGC 2 cut(s) 642, 763
BstDEI CTNAG 3 cut(s) 336, 495, 757
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 1 cut(s) 575
BstKTI GATC 3 cut(s) 46, 147, 228
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 43, 144, 225
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 241, 505
BstNI CCWGG 3 cut(s) 546, 596, 606
BstSCI CCNGG 4 cut(s) 529, 544, 594, 604
BstSFI CTRYAG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 2 cut(s) 179, 538
BstV2I GAAGAC 1 cut(s) 682
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 3 cut(s) 260, 613, 640
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 4 cut(s) 468, 507, 528, 748
BveI ACCTGC 2 cut(s) 448, 487
Cac8I GCNNGC 2 cut(s) 642, 763
Cfr10I RCCGGY 5 cut(s) 256, 292, 367, 403, 490
Cfr13I GGNCC 3 cut(s) 533, 611, 638
Csp6I GTAC 1 cut(s) 550
CviAII CATG 2 cut(s) 615, 772
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 3 cut(s) 336, 495, 757
DpnI GATC 3 cut(s) 45, 146, 227
DpnII GATC 3 cut(s) 43, 144, 225
EaeI YGGCCR 1 cut(s) 258
EagI CGGCCG 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 533
Eco52I CGGCCG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 533
EcoRII CCWGG 3 cut(s) 544, 594, 604
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 2 cut(s) 618, 775
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 614, 771
FauI CCCGC 1 cut(s) 734
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 193, 527
FokI GGATG 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 193, 527
GluI GCNGC 2 cut(s) 193, 527
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 3 cut(s) 260, 613, 640
HapII CCGG 6 cut(s) 257, 293, 368, 404, 491, 530
Hin1II CATG 2 cut(s) 618, 775
HpaII CCGG 6 cut(s) 257, 293, 368, 404, 491, 530
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 571
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 2 cut(s) 125, 334
HpyAV CCTTC 3 cut(s) 31, 64, 519
HpyCH4III ACNGT 3 cut(s) 692, 719, 769
HpyCH4V TGCA 5 cut(s) 195, 443, 482, 526, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 505
HpyF3I CTNAG 3 cut(s) 336, 495, 757
Hsp92II CATG 2 cut(s) 618, 775
KpnI GGTACC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 3 cut(s) 43, 144, 225
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 2 cut(s) 179, 538
LweI GCATC 1 cut(s) 610
MaeIII GTNAC 6 cut(s) 19, 53, 590, 665, 692, 721
MalI GATC 3 cut(s) 45, 146, 227
MboI GATC 3 cut(s) 43, 144, 225
MboII GAAGA 2 cut(s) 687, 758
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 279, 315
MluCI AATT 1 cut(s) 92
MluI ACGCGT 1 cut(s) 573
MnlI CCTC 4 cut(s) 197, 525, 528, 766
MslI CAYNNNNRTG 2 cut(s) 606, 770
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 6 cut(s) 257, 293, 368, 404, 491, 530
MspR9I CCNGG 4 cut(s) 531, 546, 596, 606
MvaI CCWGG 3 cut(s) 546, 596, 606
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 2 cut(s) 241, 505
NciI CCSGG 1 cut(s) 531
NdeII GATC 3 cut(s) 43, 144, 225
NlaIII CATG 2 cut(s) 618, 775
NlaIV GGNNCC 5 cut(s) 208, 423, 459, 534, 551
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 194, 528
PpuMI RGGWCCY 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 3 cut(s) 544, 594, 604
PspGI CCWGG 3 cut(s) 544, 594, 604
PspN4I GGNNCC 5 cut(s) 208, 423, 459, 534, 551
PspPI GGNCC 3 cut(s) 533, 611, 638
PspPPI RGGWCCY 1 cut(s) 533
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 2 cut(s) 606, 770
SatI GCNGC 2 cut(s) 193, 527
Sau3AI GATC 3 cut(s) 43, 144, 225
Sau96I GGNCC 3 cut(s) 533, 611, 638
ScrFI CCNGG 4 cut(s) 531, 546, 596, 606
SduI GDGCHC 2 cut(s) 279, 315
SfaNI GCATC 1 cut(s) 610
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 533
SmiMI CAYNNNNRTG 2 cut(s) 606, 770
Sse9I AATT 1 cut(s) 92
SsiI CCGC 8 cut(s) 446, 455, 470, 485, 557, 633, 699, 727
StyD4I CCNGG 4 cut(s) 529, 544, 594, 604
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 692, 719, 769
TasI AATT 1 cut(s) 92
TscAI CASTG 4 cut(s) 468, 507, 528, 748
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 192, 526
Tsp45I GTSAC 1 cut(s) 53
TspRI CASTG 4 cut(s) 468, 507, 528, 748
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.