pycom10g28760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
29270786 .. 29271154
369 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28760.1

Sequence Viewer

Length: 369 bp
ATGCAGGTAGACCATGCTACAGTGGTTGTGGCGGGCGGCAATGCTACTGTCGTTGTGGTGGGCGGCAATGCTACTGTCGTTGTGGTGGGCGGCAATGCTACTGTCGTTGTGGTGGGCGGCCATGCTACAGCCGTTGTGGTGGGCAGCCGTGCTACAGTGGTTATGTCGAGCGGCCAGCCCCGTACATCCAGTATGATGGTTACTATGGGAGGCCTGTGTATGACAATTACAGTGGTGACAGCAGGGGGTATTGTGTTACCCACACTAACTATTTCAGTGAAGAAAATCCCTCAGCTTGCACAGTCATGTAAATCATCGATCATCTTGTTGGACCATGATACCTTGTTCAATCTCGGGATAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.17

Weight (kDa)

8.84

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 9
AciI CCGC 6 cut(s) 32, 36, 63, 90, 117, 171
AcoI YGGCCR 2 cut(s) 118, 172
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 3 cut(s) 118, 172, 211
ApeKI GCWGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 190
BceAI ACGGC 2 cut(s) 116, 132
BfmI CTRYAG 3 cut(s) 18, 126, 153
BisI GCNGC 6 cut(s) 37, 64, 91, 118, 145, 172
BlsI GCNGC 6 cut(s) 38, 65, 92, 119, 146, 173
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 3 cut(s) 46, 73, 100
BseCI ATCGAT 1 cut(s) 317
BseGI GGATG 1 cut(s) 185
BseMI GCAATG 3 cut(s) 46, 73, 100
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 3 cut(s) 120, 174, 213
BshVI ATCGAT 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 353
BsnI GGCC 3 cut(s) 120, 174, 213
BsoBI CYCGRG 1 cut(s) 353
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 6 cut(s) 32, 36, 63, 90, 117, 171
BspANI GGCC 3 cut(s) 120, 174, 213
BspCNI CTCAG 1 cut(s) 304
BspDI ATCGAT 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 3 cut(s) 46, 73, 100
BsrI ACTGG 1 cut(s) 189
BssMI GATC 1 cut(s) 318
Bst4CI ACNGT 7 cut(s) 22, 49, 76, 103, 157, 232, 303
BstC8I GCNNGC 3 cut(s) 34, 176, 297
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 1 cut(s) 321
BstMBI GATC 1 cut(s) 318
BstSFI CTRYAG 3 cut(s) 18, 126, 153
BstV1I GCAGC 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 317
BsuRI GGCC 3 cut(s) 120, 174, 213
BsuTUI ATCGAT 1 cut(s) 317
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 4 cut(s) 27, 162, 237, 282
Cac8I GCNNGC 3 cut(s) 34, 176, 297
Cfr13I GGNCC 1 cut(s) 331
ClaI ATCGAT 1 cut(s) 317
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 4 cut(s) 14, 122, 306, 335
CviJI RGCY 7 cut(s) 120, 131, 147, 174, 178, 213, 295
CviKI_1 RGCY 7 cut(s) 120, 131, 147, 174, 178, 213, 295
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
EaeI YGGCCR 2 cut(s) 118, 172
Eco147I AGGCCT 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 353
FaeI CATG 4 cut(s) 17, 125, 309, 338
FaiI YATR 8 cut(s) 15, 123, 164, 194, 206, 221, 307, 336
FatI CATG 4 cut(s) 13, 121, 305, 334
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 6 cut(s) 37, 64, 91, 118, 145, 172
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 6 cut(s) 37, 64, 91, 118, 145, 172
GluI GCNGC 6 cut(s) 37, 64, 91, 118, 145, 172
HaeIII GGCC 3 cut(s) 120, 174, 213
Hin1II CATG 4 cut(s) 17, 125, 309, 338
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 1 cut(s) 10
HpyCH4III ACNGT 7 cut(s) 22, 49, 76, 103, 157, 232, 303
HpyCH4V TGCA 2 cut(s) 4, 299
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 4 cut(s) 17, 125, 309, 338
Kzo9I GATC 1 cut(s) 318
LpnPI CCDG 4 cut(s) 188, 202, 227, 228
Lsp1109I GCAGC 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 199, 235, 255
MalI GATC 1 cut(s) 320
MbiI CCGCTC 1 cut(s) 171
MboI GATC 1 cut(s) 318
MboII GAAGA 1 cut(s) 292
MluCI AATT 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 2 cut(s) 203, 300
MslI CAYNNNNRTG 1 cut(s) 304
NdeII GATC 1 cut(s) 318
NlaIII CATG 4 cut(s) 17, 125, 309, 338
NmuCI GTSAC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 213
PkrI GCNGC 6 cut(s) 38, 65, 92, 119, 146, 173
PspPI GGNCC 1 cut(s) 331
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 304
SatI GCNGC 6 cut(s) 37, 64, 91, 118, 145, 172
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 331
SetI ASST 3 cut(s) 9, 297, 344
SfcI CTRYAG 3 cut(s) 18, 126, 153
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 304
Sse9I AATT 1 cut(s) 225
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 6 cut(s) 32, 36, 63, 90, 117, 171
SspI AATATT 1 cut(s) 363
StuI AGGCCT 1 cut(s) 213
TaaI ACNGT 7 cut(s) 22, 49, 76, 103, 157, 232, 303
TaqI TCGA 2 cut(s) 167, 317
TasI AATT 1 cut(s) 225
TauI GCSGC 5 cut(s) 39, 66, 93, 120, 174
TscAI CASTG 4 cut(s) 27, 162, 237, 282
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 235
TspRI CASTG 4 cut(s) 27, 162, 237, 282
VpaK11BI GGWCC 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.