Rh7DG028200

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000455
Physical Location & Seq
Reverse (-)
2130219 .. 2131398
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG028200.1

Sequence Viewer

Length: 714 bp
ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTCCTCTGTAAATTCCCTCAAATACGAGACCAGATGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCTGTCCCGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTACGAGCATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCCTTCTCCGGCTCCGAAACCTGCTCCGGCTCCGGCTCCGAAACCTGCTCCCTCTCCGGCTCCGAAACCTGCTCCCGCTCCTGCTCCTAAACCTGCTCCGAAACCGACTCCGGCTCCGGCGCCGGTACCTGCTTGCCCTCGGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTACGGTGCTCCGGCTCCGGTGCCGGTTCCTCCTTGCCGTCCGCGGCCGGTGAACCCTTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTATGGTTACAGATGGCCTGCCCCTTACACACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGTTACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGGGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

237

Amino Acids

25.69

Weight (kDa)

8.96

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 5 cut(s) 277, 301, 325, 349, 385
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 4 cut(s) 203, 367, 373, 475
AccBSI CCGCTC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 499
AciI CCGC 6 cut(s) 324, 391, 497, 499, 639, 664
AcoI YGGCCR 2 cut(s) 392, 500
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 4 cut(s) 204, 368, 430, 538
AfaI GTAC 4 cut(s) 116, 375, 458, 599
AjnI CCWGG 2 cut(s) 132, 541
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 4 cut(s) 392, 500, 578, 617
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
Asp718I GGTACC 1 cut(s) 373
AspLEI GCGC 3 cut(s) 206, 370, 704
AspS9I GGNCC 2 cut(s) 440, 548
AsuHPI GGTGA 4 cut(s) 28, 148, 409, 517
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 2 cut(s) 440, 548
BanI GGYRCC 4 cut(s) 203, 367, 373, 475
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 3 cut(s) 570, 596, 713
BceAI ACGGC 2 cut(s) 477, 652
BciT130I CCWGG 2 cut(s) 134, 543
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 2 cut(s) 207, 371
BfuAI ACCTGC 5 cut(s) 277, 301, 325, 349, 385
BisI GCNGC 4 cut(s) 157, 190, 392, 500
BlsI GCNGC 4 cut(s) 158, 191, 393, 501
Bme1390I CCNGG 2 cut(s) 134, 543
Bme18I GGWCC 2 cut(s) 440, 548
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 440, 548
BmrFI CCNGG 2 cut(s) 134, 543
BmrI ACTGGG 2 cut(s) 462, 570
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 2 cut(s) 462, 570
BsaHI GRCGYC 4 cut(s) 204, 368, 430, 538
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 386, 497, 694
BsaWI WCCGGW 1 cut(s) 472
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse118I RCCGGY 5 cut(s) 370, 394, 478, 502, 619
Bse1I ACTGG 2 cut(s) 457, 565
BseBI CCWGG 2 cut(s) 134, 543
BseDI CCNNGG 3 cut(s) 386, 497, 694
BseNI ACTGG 2 cut(s) 457, 565
BseRI GAGGAG 1 cut(s) 661
BseX3I CGGCCG 2 cut(s) 392, 500
BseXI GCAGC 2 cut(s) 143, 176
Bsh1236I CGCG 1 cut(s) 499
Bsh1285I CGRYCG 2 cut(s) 395, 503
BshFI GGCC 4 cut(s) 394, 502, 580, 619
BshNI GGYRCC 4 cut(s) 203, 367, 373, 475
BsiEI CGRYCG 2 cut(s) 395, 503
BsiHKAI GWGCWC 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 233
BslFI GGGAC 4 cut(s) 147, 191, 426, 534
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 4 cut(s) 147, 191, 426, 534
BsnI GGCC 4 cut(s) 394, 502, 580, 619
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 234, 466
Bsp143I GATC 3 cut(s) 138, 171, 222
BspACI CCGC 6 cut(s) 324, 391, 497, 499, 639, 664
BspANI GGCC 4 cut(s) 394, 502, 580, 619
BspFNI CGCG 1 cut(s) 499
BspMI ACCTGC 5 cut(s) 277, 301, 325, 349, 385
BspT107I GGYRCC 4 cut(s) 203, 367, 373, 475
BspTNI GGTCTC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 326
BsrFI RCCGGY 5 cut(s) 370, 394, 478, 502, 619
BsrI ACTGG 2 cut(s) 457, 565
BssAI RCCGGY 5 cut(s) 370, 394, 478, 502, 619
BssECI CCNNGG 3 cut(s) 386, 497, 694
BssMI GATC 3 cut(s) 138, 171, 222
BssNI GRCGYC 4 cut(s) 204, 368, 430, 538
BssT1I CCWWGG 1 cut(s) 694
Bst2UI CCWGG 2 cut(s) 134, 543
Bst4CI ACNGT 2 cut(s) 461, 597
BstACI GRCGYC 4 cut(s) 204, 368, 430, 538
BstC8I GCNNGC 2 cut(s) 382, 582
BstDSI CCRYGG 1 cut(s) 497
BstFNI CGCG 1 cut(s) 499
BstH2I RGCGCY 2 cut(s) 207, 371
BstHHI GCGC 3 cut(s) 206, 370, 704
BstKTI GATC 3 cut(s) 141, 174, 225
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 138, 171, 222
BstMCI CGRYCG 2 cut(s) 395, 503
BstMWI GCNNNNNNNGC 2 cut(s) 238, 663
BstNI CCWGG 2 cut(s) 134, 543
BstSCI CCNGG 2 cut(s) 132, 541
BstSFI CTRYAG 1 cut(s) 61
BstUI CGCG 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 143, 176
BstZI CGGCCG 2 cut(s) 392, 500
BsuRI GGCC 4 cut(s) 394, 502, 580, 619
BtgI CCRYGG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 53, 685
BveI ACCTGC 5 cut(s) 277, 301, 325, 349, 385
Cac8I GCNNGC 2 cut(s) 382, 582
CfoI GCGC 3 cut(s) 206, 370, 704
Cfr10I RCCGGY 5 cut(s) 370, 394, 478, 502, 619
Cfr13I GGNCC 2 cut(s) 440, 548
Cfr42I CCGCGG 1 cut(s) 500
CseI GACGC 2 cut(s) 419, 527
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 4 cut(s) 115, 374, 457, 598
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 2 cut(s) 434, 709
CviQI GTAC 4 cut(s) 115, 374, 457, 598
DinI GGCGCC 2 cut(s) 205, 369
DpnI GATC 3 cut(s) 140, 173, 224
DpnII GATC 3 cut(s) 138, 171, 222
EaeI YGGCCR 2 cut(s) 392, 500
EagI CGGCCG 2 cut(s) 392, 500
EclXI CGGCCG 2 cut(s) 392, 500
Eco130I CCWWGG 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 440, 548
Eco52I CGGCCG 2 cut(s) 392, 500
Eco57I CTGAAG 2 cut(s) 29, 53
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 132, 541
EcoT14I CCWWGG 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 2 cut(s) 205, 369
EheI GGCGCC 2 cut(s) 205, 369
ErhI CCWWGG 1 cut(s) 694
FaeI CATG 2 cut(s) 437, 712
FaiI YATR 9 cut(s) 23, 187, 413, 435, 521, 567, 612, 627, 710
FaqI GGGAC 4 cut(s) 147, 191, 426, 534
FatI CATG 2 cut(s) 433, 708
FauI CCCGC 2 cut(s) 331, 671
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 4 cut(s) 157, 190, 392, 500
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 157, 190, 392, 500
GlaI GCGC 3 cut(s) 205, 369, 703
GluI GCNGC 4 cut(s) 157, 190, 392, 500
HaeII RGCGCY 2 cut(s) 207, 371
HaeIII GGCC 4 cut(s) 394, 502, 580, 619
HgaI GACGC 2 cut(s) 419, 527
HhaI GCGC 3 cut(s) 206, 370, 704
Hin1I GRCGYC 4 cut(s) 204, 368, 430, 538
Hin1II CATG 2 cut(s) 437, 712
Hin6I GCGC 3 cut(s) 204, 368, 702
HinP1I GCGC 3 cut(s) 204, 368, 702
HinfI GANTC 2 cut(s) 28, 355
HphI GGTGA 4 cut(s) 28, 148, 409, 517
Hpy166II GTNNAC 3 cut(s) 40, 400, 508
Hpy188I TCNGA 5 cut(s) 33, 264, 288, 312, 348
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy8I GTNNAC 3 cut(s) 40, 400, 508
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 7 cut(s) 7, 28, 53, 61, 261, 527, 609
HpyCH4III ACNGT 2 cut(s) 461, 597
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 663
Hsp92I GRCGYC 4 cut(s) 204, 368, 430, 538
Hsp92II CATG 2 cut(s) 437, 712
HspAI GCGC 3 cut(s) 204, 368, 702
KasI GGCGCC 2 cut(s) 203, 367
KpnI GGTACC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 138
KspI CCGCGG 1 cut(s) 500
Kzo9I GATC 3 cut(s) 138, 171, 222
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeIII GTNAC 7 cut(s) 16, 419, 527, 569, 632, 650, 658
MalI GATC 3 cut(s) 140, 173, 224
MbiI CCGCTC 1 cut(s) 326
MboI GATC 3 cut(s) 138, 171, 222
MboII GAAGA 2 cut(s) 136, 695
MhlI GDGCHC 2 cut(s) 234, 466
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 2 cut(s) 204, 368
MlyI GAGTC 1 cut(s) 349
MnlI CCTC 9 cut(s) 92, 105, 191, 258, 310, 396, 419, 495, 639
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 499
MspR9I CCNGG 2 cut(s) 134, 543
MvaI CCWGG 2 cut(s) 134, 543
MvnI CGCG 1 cut(s) 499
MwoI GCNNNNNNNGC 2 cut(s) 238, 663
NarI GGCGCC 2 cut(s) 204, 368
NdeII GATC 3 cut(s) 138, 171, 222
NlaIII CATG 2 cut(s) 437, 712
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 16, 658
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 4 cut(s) 158, 191, 393, 501
PleI GAGTC 1 cut(s) 349
PluTI GGCGCC 2 cut(s) 207, 371
PpsI GAGTC 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 132, 541
PspGI CCWGG 2 cut(s) 132, 541
PspPI GGNCC 2 cut(s) 440, 548
RsaI GTAC 4 cut(s) 116, 375, 458, 599
RsaNI GTAC 4 cut(s) 115, 374, 457, 598
RseI CAYNNNNRTG 1 cut(s) 146
SacII CCGCGG 1 cut(s) 500
SatI GCNGC 4 cut(s) 157, 190, 392, 500
Sau3AI GATC 3 cut(s) 138, 171, 222
Sau96I GGNCC 2 cut(s) 440, 548
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 134, 543
SduI GDGCHC 2 cut(s) 234, 466
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 61
SfoI GGCGCC 2 cut(s) 205, 369
Sfr303I CCGCGG 1 cut(s) 500
SgrBI CCGCGG 1 cut(s) 500
SinI GGWCC 2 cut(s) 440, 548
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 89
SsiI CCGC 6 cut(s) 324, 391, 497, 499, 639, 664
SspDI GGCGCC 2 cut(s) 203, 367
StyD4I CCNGG 2 cut(s) 132, 541
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 2 cut(s) 461, 597
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 2 cut(s) 394, 502
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 2 cut(s) 53, 685
TseFI GTSAC 2 cut(s) 16, 658
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 658
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 2 cut(s) 53, 685
VpaK11BI GGWCC 2 cut(s) 440, 548
XapI RAATTY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.