pycom10g28730

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000455
Physical Location & Seq
Reverse (-)
29239163 .. 29239963
801 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28730.2

Sequence Viewer

Length: 639 bp
ATGGTGCTGAGAGGTGATCGATCTTCAGTGTCACAAATGCTACAAGAAGGAGAAATACGAGACGAGATATACGACGAGAAGCAAAACCAAGTGGTGATCAAAGTGATATGCTGTAGTCCAGAAAAGATAAGGGACAAGATTTGCTGCAAAGGTGGGAGTGCCATCAAAAGCATCGAGATCATAGAGCCCGAGAAGAAAAAAGATGACGGGAAGAAAAAAGATGACGTCAATAAAAAAGATGACGGGAAGAAAAAAGATGAAGTCAATAAAAAAGATGACGGGAAGAAAAAAGATGACGGGAAGAAAAAAGATGAAGGCAACCCTAAAGATGACGGCAAGAAAAAAGATGAAGGCAAGAAAAAAGATGAAGGCAACCCTAAAGATGACGGCAAGTCTAAAGATCATGTTGTGCAAGGGCACCCACCGCATGTCCGAGCGTGTTGTATGGATTGTTACCAGGGGCATGCGGGTGGGCCGTGCTACAATGGTTATGGCGGGGGGCCAGCCCCGTACATCCAGTATGATGGTTACTATGGAAGGCCTGTGTATGATAGTTACGGCGGTGGCAGCATGGGGTATTGTGTTACCCGCCCTGACTATTTCAATGACGAAAATCCCTCAGCTTGCACAATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

213

Amino Acids

23.56

Weight (kDa)

7.46

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 417
AciI CCGC 5 cut(s) 425, 467, 495, 561, 589
AcuI CTGAAG 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 512
AgsI TTSAA 1 cut(s) 604
AhdI GACNNNNNGTC 1 cut(s) 391
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 1 cut(s) 623
AluI AGCT 1 cut(s) 623
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 3 cut(s) 473, 500, 539
ApeKI GCWGC 2 cut(s) 144, 567
AspS9I GGNCC 2 cut(s) 473, 500
AsuHPI GGTGA 2 cut(s) 26, 106
AvaI CYCGRG 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 420
BanI GGYRCC 1 cut(s) 417
BanII GRGCYC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 39, 71
BbvCI CCTCAGC 1 cut(s) 619
BbvI GCAGC 2 cut(s) 131, 579
BccI CCATC 2 cut(s) 170, 518
BceAI ACGGC 4 cut(s) 349, 403, 460, 574
BciT130I CCWGG 1 cut(s) 458
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 112
BisI GCNGC 2 cut(s) 145, 568
BlsI GCNGC 2 cut(s) 146, 569
Bme1390I CCNGG 1 cut(s) 458
BmeRI GACNNNNNGTC 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 473, 500
BmiI GGNNCC 2 cut(s) 419, 501
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 619
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 517
BseBI CCWGG 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 517
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 2 cut(s) 131, 579
BshFI GGCC 3 cut(s) 475, 502, 541
BshNI GGYRCC 1 cut(s) 417
BshVI ATCGAT 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 54
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 3 cut(s) 475, 502, 541
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 189, 420
Bsp143I GATC 5 cut(s) 16, 20, 96, 177, 400
BspACI CCGC 5 cut(s) 425, 467, 495, 561, 589
BspANI GGCC 3 cut(s) 475, 502, 541
BspCNI CTCAG 1 cut(s) 632
BspDI ATCGAT 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 419, 501
BspT107I GGYRCC 1 cut(s) 417
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 5 cut(s) 16, 20, 96, 177, 400
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 458
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 465, 504, 625
BstDEI CTNAG 2 cut(s) 8, 619
BstF5I GGATG 1 cut(s) 513
BstKTI GATC 5 cut(s) 19, 23, 99, 180, 403
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 5 cut(s) 16, 20, 96, 177, 400
BstMWI GCNNNNNNNGC 2 cut(s) 424, 567
BstNI CCWGG 1 cut(s) 458
BstNSI RCATGY 2 cut(s) 431, 467
BstSCI CCNGG 1 cut(s) 456
BstSFI CTRYAG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 131, 579
BstXI CCANNNNNNTGG 1 cut(s) 524
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 3 cut(s) 475, 502, 541
BsuTUI ATCGAT 1 cut(s) 19
BtsCI GGATG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 3 cut(s) 465, 504, 625
Cfr13I GGNCC 2 cut(s) 473, 500
ClaI ATCGAT 1 cut(s) 19
Csp6I GTAC 1 cut(s) 511
CviAII CATG 5 cut(s) 404, 428, 464, 571, 634
CviJI RGCY 6 cut(s) 187, 475, 502, 506, 541, 623
CviKI_1 RGCY 6 cut(s) 187, 475, 502, 506, 541, 623
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 2 cut(s) 8, 619
DpnI GATC 5 cut(s) 18, 22, 98, 179, 402
DpnII GATC 5 cut(s) 16, 20, 96, 177, 400
DriI GACNNNNNGTC 1 cut(s) 391
Eam1105I GACNNNNNGTC 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 54
FaeI CATG 5 cut(s) 407, 431, 467, 574, 637
FaqI GGGAC 1 cut(s) 146
FatI CATG 5 cut(s) 403, 427, 463, 570, 633
FauI CCCGC 3 cut(s) 460, 488, 596
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 145, 568
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 145, 568
GluI GCNGC 2 cut(s) 145, 568
HaeIII GGCC 3 cut(s) 475, 502, 541
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 5 cut(s) 407, 431, 467, 574, 637
HphI GGTGA 2 cut(s) 26, 106
Hpy188I TCNGA 1 cut(s) 434
Hpy188III TCNNGA 2 cut(s) 119, 175
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 5 cut(s) 41, 308, 344, 362, 531
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 147, 412, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 567
HpyF3I CTNAG 2 cut(s) 8, 619
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 5 cut(s) 407, 431, 467, 574, 637
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 5 cut(s) 16, 20, 96, 177, 400
LpnPI CCDG 7 cut(s) 132, 443, 470, 516, 530, 555, 606
Lsp1109I GCAGC 2 cut(s) 131, 579
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 5 cut(s) 30, 452, 527, 554, 583
MalI GATC 5 cut(s) 18, 22, 98, 179, 402
MboI GATC 5 cut(s) 16, 20, 96, 177, 400
MboII GAAGA 6 cut(s) 15, 205, 223, 259, 295, 313
MhlI GDGCHC 2 cut(s) 189, 420
MnlI CCTC 2 cut(s) 5, 628
MslI CAYNNNNRTG 2 cut(s) 468, 632
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 424, 567
NdeII GATC 5 cut(s) 16, 20, 96, 177, 400
NlaIII CATG 5 cut(s) 407, 431, 467, 574, 637
NlaIV GGNNCC 2 cut(s) 419, 501
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 2 cut(s) 431, 467
PaeI GCATGC 1 cut(s) 467
PceI AGGCCT 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PkrI GCNGC 2 cut(s) 146, 569
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 419, 501
PspPI GGNCC 2 cut(s) 473, 500
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 2 cut(s) 468, 632
SatI GCNGC 2 cut(s) 145, 568
Sau3AI GATC 5 cut(s) 16, 20, 96, 177, 400
Sau96I GGNCC 2 cut(s) 473, 500
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 2 cut(s) 189, 420
SetI ASST 4 cut(s) 16, 154, 228, 625
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 468, 632
SphI GCATGC 1 cut(s) 467
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 5 cut(s) 425, 467, 495, 561, 589
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 1 cut(s) 456
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 19, 174
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 144, 567
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 4 cut(s) 273, 327, 363, 381
TspRI CASTG 1 cut(s) 33
XceI RCATGY 2 cut(s) 431, 467
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.