Rmu_co8428345.1_g000001

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8428345.1
OG0000455
Physical Location & Seq
Forward (+)
1 .. 279
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8428345.1_g000001.1.cds

Sequence Viewer

Length: 279 bp
cctaaagagaaacccaaagagcccgagaagccgaaggaagctccacctgtggtgatggttaacccgtgttgtatggaatgttacggagggcatcctggtggtccctgccaaactgggtacagttacggtggacctgccccttacatagagtacgatggctactatggaaggccggtctatgatagttacggcggtgggaggaactatactactagtttctgcgtgacccgccccgattgtttcagtgaagaaaatccccaagcgtgcgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

5.0

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 2 cut(s) 192, 229
AfaI GTAC 2 cut(s) 119, 152
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 101, 131
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 101, 131
BanII GRGCYC 1 cut(s) 24
BccI CCATC 3 cut(s) 49, 149, 278
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 96
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 2 cut(s) 101, 131
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 101, 131
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 118
BshFI GGCC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 24
BspACI CCGC 2 cut(s) 192, 229
BspANI GGCC 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 122, 128
BstC8I GCNNGC 1 cut(s) 265
BstF5I GGATG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 28, 228
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 101, 131
Csp6I GTAC 2 cut(s) 118, 151
CviAII CATG 1 cut(s) 274
CviJI RGCY 5 cut(s) 22, 31, 41, 159, 172
CviKI_1 RGCY 5 cut(s) 22, 31, 41, 159, 172
CviQI GTAC 2 cut(s) 118, 151
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 101, 131
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 1 cut(s) 277
FaiI YATR 6 cut(s) 74, 146, 165, 180, 207, 275
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 273
FauI CCCGC 1 cut(s) 236
FokI GGATG 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 269
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 61, 131
Hpy8I GTNNAC 2 cut(s) 61, 131
HpyAV CCTTC 2 cut(s) 28, 162
HpyCH4III ACNGT 2 cut(s) 122, 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 228
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 1 cut(s) 267
KspAI GTTAAC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 7 cut(s) 60, 81, 99, 108, 118, 147, 186
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 80, 122, 185, 223
MboII GAAGA 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 24
MnlI CCTC 2 cut(s) 80, 192
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 28, 228
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 101, 131
RsaI GTAC 2 cut(s) 119, 152
RsaNI GTAC 2 cut(s) 118, 151
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 101, 131
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 24
SetI ASST 3 cut(s) 43, 49, 136
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 2 cut(s) 101, 131
SmiMI CAYNNNNRTG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 212
SsiI CCGC 2 cut(s) 192, 229
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 122, 128
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 101, 131
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.