Rmu_sc0008178.1_g000003

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008178.1
OG0000455
Physical Location & Seq
Reverse (-)
4450 .. 5641
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008178.1_g000003.1.cds

Sequence Viewer

Length: 669 bp
atgggggaaaaggaaaaggtgacgataatgattctgaaggtggaccttcagtgtgaaaaatgctacaggaaggtcaagaaagttctcagtaaattccctcaaatacgagaccagacgtacgacgagaagaacaacctggtgatcatcaaagtcgtctgctgcagtcctgaaaagatcagggacaagctatgctgcaaaggaggtggcgccattaagagcatcgagatcaaagtgcccgagaagcccaagccaaaggagccggagaagccaaaagatcagaaacccaaggagccggagaagcccaaagagaaaccaaaggagccggagaagcctaaagagaaaccaaaggagccggagaagcctaaagagcaaccaaaggagccggagaagcctaaagagaaacccaaagagcccgagaagccgaaggaagctccacctgtggtgatggttaacccgtgttgtatggaatgttacggagggcatcctggtggtccctgccaaactgggtacagttacggtggacctgccccttacatagagtacgatggctactatggaaggccggtctatgatagttacggcggtgggaggaactatactactagtttctgcgtgacccgccccgattgtttcagtgaagaaaatccccaagcgtgcgccatcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

222

Amino Acids

25.18

Weight (kDa)

8.8

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 532
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 582, 619
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 32, 56
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 119, 509, 542
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 2 cut(s) 135, 484
AluBI AGCT 2 cut(s) 187, 431
AluI AGCT 2 cut(s) 187, 431
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 2 cut(s) 236, 413
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 2 cut(s) 159, 192
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 2 cut(s) 209, 659
AspS9I GGNCC 3 cut(s) 43, 491, 521
AsuHPI GGTGA 3 cut(s) 31, 151, 454
AvaI CYCGRG 2 cut(s) 236, 413
AvaII GGWCC 3 cut(s) 43, 491, 521
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 146, 179
BccI CCATC 3 cut(s) 439, 539, 668
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 2 cut(s) 137, 486
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 2 cut(s) 64, 160
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 532
BisI GCNGC 2 cut(s) 160, 193
BlsI GCNGC 2 cut(s) 161, 194
Bme1390I CCNGG 2 cut(s) 137, 486
Bme18I GGWCC 3 cut(s) 43, 491, 521
BmeT110I CYCGRG 2 cut(s) 236, 413
BmgT120I GGNCC 3 cut(s) 43, 491, 521
BmiI GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 493
BmrFI CCNGG 2 cut(s) 137, 486
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 228, 490
BmuI ACTGGG 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 508
BseBI CCWGG 2 cut(s) 137, 486
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 146, 179
BshFI GGCC 1 cut(s) 562
BshNI GGYRCC 1 cut(s) 206
BsiHKCI CYCGRG 2 cut(s) 236, 413
BsiSI CCGG 6 cut(s) 260, 293, 323, 353, 383, 563
BsiWI CGTACG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 194, 477
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 194, 477
BsnI GGCC 1 cut(s) 562
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 2 cut(s) 236, 413
Bsp1286I GDGCHC 2 cut(s) 237, 414
Bsp143I GATC 4 cut(s) 141, 174, 225, 274
BspACI CCGC 2 cut(s) 582, 619
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 493
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 562
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 4 cut(s) 141, 174, 225, 274
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 137, 486
Bst4CI ACNGT 2 cut(s) 512, 518
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 655
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 659
BstKTI GATC 4 cut(s) 144, 177, 228, 277
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 141, 174, 225, 274
BstNI CCWGG 2 cut(s) 137, 486
BstSCI CCNGG 2 cut(s) 135, 484
BstSFI CTRYAG 2 cut(s) 64, 160
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 146, 179
BsuRI GGCC 1 cut(s) 562
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 56, 640
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 655
CfoI GCGC 2 cut(s) 209, 659
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 3 cut(s) 43, 491, 521
CsiI ACCWGGT 1 cut(s) 135
Csp6I GTAC 3 cut(s) 118, 508, 541
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 664
CviQI GTAC 3 cut(s) 118, 508, 541
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 1 cut(s) 208
DpnI GATC 4 cut(s) 143, 176, 227, 276
DpnII GATC 4 cut(s) 141, 174, 225, 274
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 43, 491, 521
Eco57I CTGAAG 2 cut(s) 32, 56
Eco88I CYCGRG 2 cut(s) 236, 413
EcoRII CCWGG 2 cut(s) 135, 484
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 414
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 667
FaiI YATR 7 cut(s) 190, 464, 536, 555, 570, 597, 665
FaqI GGGAC 2 cut(s) 194, 477
FatI CATG 1 cut(s) 663
FauI CCCGC 1 cut(s) 626
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 160, 193
FokI GGATG 1 cut(s) 468
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 2 cut(s) 160, 193
FspBI CTAG 1 cut(s) 603
GlaI GCGC 2 cut(s) 208, 658
GluI GCNGC 2 cut(s) 160, 193
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 562
HapII CCGG 6 cut(s) 260, 293, 323, 353, 383, 563
HhaI GCGC 2 cut(s) 209, 659
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 2 cut(s) 207, 657
HinP1I GCGC 2 cut(s) 207, 657
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 451
HpaII CCGG 6 cut(s) 260, 293, 323, 353, 383, 563
HphI GGTGA 3 cut(s) 31, 151, 454
Hpy166II GTNNAC 3 cut(s) 43, 451, 521
Hpy188I TCNGA 2 cut(s) 36, 279
Hpy188III TCNNGA 3 cut(s) 76, 167, 223
Hpy8I GTNNAC 3 cut(s) 43, 451, 521
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 31, 56, 64, 418, 552
HpyCH4III ACNGT 2 cut(s) 512, 518
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 162, 195
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 2 cut(s) 207, 657
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 4 cut(s) 141, 174, 225, 274
LmnI GCTCC 6 cut(s) 256, 289, 319, 349, 379, 436
Lsp1109I GCAGC 2 cut(s) 146, 179
LweI GCATC 2 cut(s) 228, 490
MabI ACCWGGT 1 cut(s) 135
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 5 cut(s) 19, 470, 512, 575, 613
MalI GATC 4 cut(s) 143, 176, 227, 276
MboI GATC 4 cut(s) 141, 174, 225, 274
MboII GAAGA 2 cut(s) 139, 650
MhlI GDGCHC 2 cut(s) 237, 414
MluCI AATT 1 cut(s) 92
Mly113I GGCGCC 1 cut(s) 207
MnlI CCTC 4 cut(s) 108, 194, 470, 582
MseI TTAA 2 cut(s) 213, 450
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 6 cut(s) 260, 293, 323, 353, 383, 563
MspR9I CCNGG 2 cut(s) 137, 486
MvaI CCWGG 2 cut(s) 137, 486
NarI GGCGCC 1 cut(s) 207
NdeII GATC 4 cut(s) 141, 174, 225, 274
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 493
NmuCI GTSAC 2 cut(s) 19, 613
PfeI GAWTC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 2 cut(s) 161, 194
PluTI GGCGCC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 135, 484
PspGI CCWGG 2 cut(s) 135, 484
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 7 cut(s) 208, 258, 291, 321, 351, 381, 493
PspPI GGNCC 3 cut(s) 43, 491, 521
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 3 cut(s) 119, 509, 542
RsaNI GTAC 3 cut(s) 118, 508, 541
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 2 cut(s) 213, 450
SatI GCNGC 2 cut(s) 160, 193
Sau3AI GATC 4 cut(s) 141, 174, 225, 274
Sau96I GGNCC 3 cut(s) 43, 491, 521
ScrFI CCNGG 2 cut(s) 137, 486
SduI GDGCHC 2 cut(s) 237, 414
SexAI ACCWGGT 1 cut(s) 135
SfaNI GCATC 2 cut(s) 228, 490
SfcI CTRYAG 2 cut(s) 64, 160
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 3 cut(s) 43, 491, 521
SmiMI CAYNNNNRTG 1 cut(s) 486
SpeI ACTAGT 1 cut(s) 602
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 582, 619
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 135, 484
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 512, 518
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 213, 450
Tru9I TTAA 2 cut(s) 213, 450
TscAI CASTG 2 cut(s) 56, 640
TseFI GTSAC 2 cut(s) 19, 613
TseI GCWGC 2 cut(s) 159, 192
Tsp45I GTSAC 2 cut(s) 19, 613
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 2 cut(s) 56, 640
VpaK11BI GGWCC 3 cut(s) 43, 491, 521
XapI RAATTY 1 cut(s) 92
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.