Rroxscaffold_2G00140790

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000455
Physical Location & Seq
Reverse (-)
79079347 .. 79080609
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140790.1

Sequence Viewer

Length: 777 bp
ATGGGGGAAAAGAAGGTGACTGTAATGGTTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCACAAATACGAGACCAGAAGTACGACGAGAAGAAGAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGATGTGGCGTCATTAAGTGCATCGAGATCATAGAGCCTCCTCCGCCTCCGCCTCCCCCTCCGCCTCCTCCTCCACCTCCTCCTCCTCCTCCTCCACCGCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCTCCTCCGCCTCCTCCTCCCCCTCCGCCTCCGCCTCCTTGCCTTTGCATTTGCCTCTGCCCTTGCCCTTGCCCTTGCCGGCCGGTGAAACCATGTTGTTCGGATTGTAACGAAGGGCGTCGTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGTGTTGCTCGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGGACACATGTTGTACGGATTGTTACGAAGGGCGTCCCGGCGGTCCCTGTGAAACTGGGTATGGTTATGGTGGGCCTGTCCCTTACATACAGTATGGAAGGCCGGTGTATGATAGTTACGGCGGTGGGAGGAGCTATACTACCAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

258

Amino Acids

28.08

Weight (kDa)

8.24

Isoelectric Point (pI)

77.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 425, 497, 563
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 29, 53
AcyI GRCGYC 4 cut(s) 204, 463, 529, 601
AfaI GTAC 2 cut(s) 116, 583
AflIII ACRYGT 1 cut(s) 575
AjnI CCWGG 2 cut(s) 132, 532
AluBI AGCT 2 cut(s) 184, 702
AluI AGCT 2 cut(s) 184, 702
Alw26I GTCTC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 717
AoxI GGCC 5 cut(s) 425, 497, 563, 641, 668
ApeKI GCWGC 2 cut(s) 156, 189
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 1 cut(s) 767
AspS9I GGNCC 4 cut(s) 473, 539, 611, 641
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 28, 148, 442
AvaII GGWCC 3 cut(s) 473, 539, 611
BbvI GCAGC 2 cut(s) 143, 176
BccI CCATC 1 cut(s) 776
BceAI ACGGC 1 cut(s) 703
BciT130I CCWGG 2 cut(s) 134, 534
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 99
BfmI CTRYAG 2 cut(s) 61, 157
BisI GCNGC 4 cut(s) 157, 190, 497, 563
BlsI GCNGC 4 cut(s) 158, 191, 498, 564
Bme1390I CCNGG 3 cut(s) 134, 534, 606
Bme18I GGWCC 3 cut(s) 473, 539, 611
BmgT120I GGNCC 4 cut(s) 473, 539, 611, 641
BmiI GGNNCC 3 cut(s) 475, 541, 613
BmrFI CCNGG 3 cut(s) 134, 534, 606
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 633
BpuMI CCSGG 1 cut(s) 606
BsaHI GRCGYC 4 cut(s) 204, 463, 529, 601
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 491, 557
Bse118I RCCGGY 5 cut(s) 423, 427, 499, 565, 670
Bse1I ACTGG 2 cut(s) 628, 711
BseBI CCWGG 2 cut(s) 134, 534
BseDI CCNNGG 2 cut(s) 491, 557
BseGI GGATG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 628, 711
BseX3I CGGCCG 3 cut(s) 425, 497, 563
BseXI GCAGC 2 cut(s) 143, 176
Bsh1285I CGRYCG 3 cut(s) 428, 500, 566
BshFI GGCC 5 cut(s) 427, 499, 565, 643, 670
BsiEI CGRYCG 3 cut(s) 428, 500, 566
BsiSI CCGG 6 cut(s) 424, 428, 500, 566, 606, 671
BslFI GGGAC 6 cut(s) 191, 459, 525, 588, 597, 632
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 6 cut(s) 191, 459, 525, 588, 597, 632
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 5 cut(s) 427, 499, 565, 643, 670
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 138, 171, 222
BspANI GGCC 5 cut(s) 427, 499, 565, 643, 670
BspLI GGNNCC 3 cut(s) 475, 541, 613
BspMAI CTGCAG 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 5 cut(s) 423, 427, 499, 565, 670
BsrI ACTGG 2 cut(s) 628, 711
BssAI RCCGGY 5 cut(s) 423, 427, 499, 565, 670
BssECI CCNNGG 2 cut(s) 491, 557
BssMI GATC 3 cut(s) 138, 171, 222
BssNI GRCGYC 4 cut(s) 204, 463, 529, 601
Bst2UI CCWGG 2 cut(s) 134, 534
Bst4CI ACNGT 2 cut(s) 22, 660
BstACI GRCGYC 4 cut(s) 204, 463, 529, 601
BstC8I GCNNGC 2 cut(s) 425, 763
BstF5I GGATG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 3 cut(s) 141, 174, 225
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 138, 171, 222
BstMCI CGRYCG 3 cut(s) 428, 500, 566
BstMWI GCNNNNNNNGC 2 cut(s) 238, 726
BstNI CCWGG 2 cut(s) 134, 534
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 3 cut(s) 132, 532, 604
BstSFI CTRYAG 2 cut(s) 61, 157
BstV1I GCAGC 2 cut(s) 143, 176
BstZI CGGCCG 3 cut(s) 425, 497, 563
BsuRI GGCC 5 cut(s) 427, 499, 565, 643, 670
BtsCI GGATG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 53, 748
Cac8I GCNNGC 2 cut(s) 425, 763
CaiI CAGNNNCTG 1 cut(s) 717
CfoI GCGC 1 cut(s) 767
Cfr10I RCCGGY 5 cut(s) 423, 427, 499, 565, 670
Cfr13I GGNCC 4 cut(s) 473, 539, 611, 641
CseI GACGC 4 cut(s) 193, 452, 518, 590
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 115, 582
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 3 cut(s) 438, 576, 772
CviJI RGCY 8 cut(s) 184, 232, 427, 499, 565, 643, 670, 702
CviKI_1 RGCY 8 cut(s) 184, 232, 427, 499, 565, 643, 670, 702
CviQI GTAC 2 cut(s) 115, 582
DpnI GATC 3 cut(s) 140, 173, 224
DpnII GATC 3 cut(s) 138, 171, 222
EaeI YGGCCR 3 cut(s) 425, 497, 563
EagI CGGCCG 3 cut(s) 425, 497, 563
EciI GGCGGA 8 cut(s) 228, 234, 246, 288, 318, 342, 360, 366
EclXI CGGCCG 3 cut(s) 425, 497, 563
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 473, 539, 611
Eco52I CGGCCG 3 cut(s) 425, 497, 563
Eco57I CTGAAG 2 cut(s) 29, 53
EcoRII CCWGG 2 cut(s) 132, 532
FaeI CATG 3 cut(s) 441, 579, 775
FaqI GGGAC 6 cut(s) 191, 459, 525, 588, 597, 632
FatI CATG 3 cut(s) 437, 575, 771
FauI CCCGC 1 cut(s) 734
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 157, 190, 497, 563
FokI GGATG 1 cut(s) 210
Fsp4HI GCNGC 4 cut(s) 157, 190, 497, 563
GlaI GCGC 1 cut(s) 766
GluI GCNGC 4 cut(s) 157, 190, 497, 563
HaeIII GGCC 5 cut(s) 427, 499, 565, 643, 670
HapII CCGG 6 cut(s) 424, 428, 500, 566, 606, 671
HgaI GACGC 4 cut(s) 193, 452, 518, 590
HhaI GCGC 1 cut(s) 767
Hin1I GRCGYC 4 cut(s) 204, 463, 529, 601
Hin1II CATG 3 cut(s) 441, 579, 775
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HpaII CCGG 6 cut(s) 424, 428, 500, 566, 606, 671
HphI GGTGA 3 cut(s) 28, 148, 442
Hpy166II GTNNAC 2 cut(s) 40, 571
Hpy188I TCNGA 3 cut(s) 33, 448, 514
Hpy188III TCNNGA 3 cut(s) 73, 164, 220
Hpy8I GTNNAC 2 cut(s) 40, 571
Hpy99I CGWCG 2 cut(s) 122, 468
HpyAV CCTTC 8 cut(s) 7, 28, 53, 61, 452, 518, 590, 660
HpyCH4III ACNGT 2 cut(s) 22, 660
HpyCH4V TGCA 4 cut(s) 159, 192, 216, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 726
Hsp92I GRCGYC 4 cut(s) 204, 463, 529, 601
Hsp92II CATG 3 cut(s) 441, 579, 775
HspAI GCGC 1 cut(s) 765
KroI GCCGGC 1 cut(s) 423
KroNI GCCGGC 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 171, 222
LmnI GCTCC 1 cut(s) 699
Lsp1109I GCAGC 2 cut(s) 143, 176
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 1 cut(s) 132
MaeIII GTNAC 7 cut(s) 16, 452, 518, 590, 683, 713, 721
MalI GATC 3 cut(s) 140, 173, 224
MboI GATC 3 cut(s) 138, 171, 222
MboII GAAGA 3 cut(s) 136, 139, 758
MluCI AATT 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 423
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 6 cut(s) 424, 428, 500, 566, 606, 671
MspR9I CCNGG 3 cut(s) 134, 534, 606
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 2 cut(s) 134, 534
MwoI GCNNNNNNNGC 2 cut(s) 238, 726
NaeI GCCGGC 1 cut(s) 425
NciI CCSGG 1 cut(s) 606
NdeII GATC 3 cut(s) 138, 171, 222
NgoMIV GCCGGC 1 cut(s) 423
NlaIII CATG 3 cut(s) 441, 579, 775
NlaIV GGNNCC 3 cut(s) 475, 541, 613
NmeAIII GCCGAG 2 cut(s) 472, 538
NmuCI GTSAC 2 cut(s) 16, 721
NspI RCATGY 1 cut(s) 579
PciI ACATGT 1 cut(s) 575
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 425
PkrI GCNGC 4 cut(s) 158, 191, 498, 564
PscI ACATGT 1 cut(s) 575
Psp6I CCWGG 2 cut(s) 132, 532
PspGI CCWGG 2 cut(s) 132, 532
PspN4I GGNNCC 3 cut(s) 475, 541, 613
PspPI GGNCC 4 cut(s) 473, 539, 611, 641
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 717
RsaI GTAC 2 cut(s) 116, 583
RsaNI GTAC 2 cut(s) 115, 582
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 4 cut(s) 157, 190, 497, 563
Sau3AI GATC 3 cut(s) 138, 171, 222
Sau96I GGNCC 4 cut(s) 473, 539, 611, 641
ScrFI CCNGG 3 cut(s) 134, 534, 606
SetI ASST 8 cut(s) 18, 39, 45, 72, 138, 186, 274, 704
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 2 cut(s) 61, 157
SinI GGWCC 3 cut(s) 473, 539, 611
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 132, 532, 604
TaaI ACNGT 2 cut(s) 22, 660
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 89
TauI GCSGC 2 cut(s) 499, 565
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 53, 748
TseFI GTSAC 2 cut(s) 16, 721
TseI GCWGC 2 cut(s) 156, 189
Tsp45I GTSAC 2 cut(s) 16, 721
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 2 cut(s) 53, 748
VpaK11BI GGWCC 3 cut(s) 473, 539, 611
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.