Rroxscaffold_4G00307930

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000455
Physical Location & Seq
Forward (+)
29458371 .. 29459859
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307930.1

Sequence Viewer

Length: 528 bp
ATGGGGGAAAATAAGGTGACTATGATTCTGAAGGTAGATCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTTCTCTGTAAATTCCCTCAAATATGTGACCAGACGTACGACGAGAAGAACAACCAAGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGAGCCCGAGAAGCTCAAAGACAAGCCCAAAGAAGACGTGTCTAAAGAGAAACCAAAGGAAAATGTGTCTAAAGAGAAGCCGAAGAACCCGTGTTGTATGGATTGTTACAGAGGGCGTCCTGGTGGTCCCTGCGAAACTGGATATGGTTATGGTAGGCTTGCCCTTTACATACAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGCTATACTACTTGTTACTGCGTGACCCACCCCGATTGTTTCGGTGAAGAAAATCCCCAAGCGTGCATCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

175

Amino Acids

19.87

Weight (kDa)

8.6

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 1 cut(s) 441
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 26, 50
AcyI GRCGYC 2 cut(s) 201, 340
AfaI GTAC 2 cut(s) 113, 401
AflIII ACRYGT 1 cut(s) 261
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 3 cut(s) 181, 238, 453
AluI AGCT 3 cut(s) 181, 238, 453
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 153, 186
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 28, 506
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 140, 173
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 135
BfmI CTRYAG 2 cut(s) 58, 154
BfoI RGCGCY 1 cut(s) 204
BglII AGATCT 1 cut(s) 37
BisI GCNGC 2 cut(s) 154, 187
BlsI GCNGC 2 cut(s) 155, 188
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 202, 352
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 264
BsaHI GRCGYC 2 cut(s) 201, 340
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 463
BseXI GCAGC 2 cut(s) 140, 173
BshFI GGCC 1 cut(s) 421
BshNI GGYRCC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 422
BsiWI CGTACG 1 cut(s) 111
BslFI GGGAC 2 cut(s) 188, 336
BsmFI GGGAC 2 cut(s) 188, 336
BsnI GGCC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 4 cut(s) 37, 135, 168, 219
BspACI CCGC 1 cut(s) 441
BspANI GGCC 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 202, 352
BspMAI CTGCAG 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 421
BssMI GATC 4 cut(s) 37, 135, 168, 219
BssNI GRCGYC 2 cut(s) 201, 340
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 399
BstACI GRCGYC 2 cut(s) 201, 340
BstC8I GCNNGC 2 cut(s) 384, 514
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 4 cut(s) 40, 138, 171, 222
BstMBI GATC 4 cut(s) 37, 135, 168, 219
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 2 cut(s) 58, 154
BstV1I GCAGC 2 cut(s) 140, 173
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 421
BtrI CACGTC 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 384, 514
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 112, 400
CspCI CAANNNNNGTGG 4 cut(s) 178, 213, 467, 502
CviAII CATG 1 cut(s) 523
CviJI RGCY 9 cut(s) 181, 229, 238, 250, 304, 382, 408, 421, 453
CviKI_1 RGCY 9 cut(s) 181, 229, 238, 250, 304, 382, 408, 421, 453
CviQI GTAC 2 cut(s) 112, 400
DinI GGCGCC 1 cut(s) 202
DpnI GATC 4 cut(s) 39, 137, 170, 221
DpnII GATC 4 cut(s) 37, 135, 168, 219
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 2 cut(s) 26, 50
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
FaeI CATG 1 cut(s) 526
FaqI GGGAC 2 cut(s) 188, 336
FatI CATG 1 cut(s) 522
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 154, 187
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 154, 187
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 154, 187
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 421
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 2 cut(s) 201, 340
Hin1II CATG 1 cut(s) 526
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 28, 506
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 70, 161, 217
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 25, 58, 411
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4IV ACGT 2 cut(s) 110, 261
HpyCH4V TGCA 3 cut(s) 156, 189, 516
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 2 cut(s) 110, 261
Hsp92I GRCGYC 2 cut(s) 201, 340
Hsp92II CATG 1 cut(s) 526
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 4 cut(s) 37, 135, 168, 219
LmnI GCTCC 1 cut(s) 450
LpnPI CCDG 9 cut(s) 46, 119, 157, 174, 330, 348, 357, 367, 435
Lsp1109I GCAGC 2 cut(s) 140, 173
LweI GCATC 1 cut(s) 222
MaeII ACGT 2 cut(s) 110, 261
MaeIII GTNAC 6 cut(s) 16, 101, 329, 434, 464, 472
MalI GATC 4 cut(s) 39, 137, 170, 221
MboI GATC 4 cut(s) 37, 135, 168, 219
MboII GAAGA 5 cut(s) 32, 133, 269, 319, 509
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 86
Mly113I GGCGCC 1 cut(s) 201
MnlI CCTC 4 cut(s) 102, 188, 329, 441
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 2 cut(s) 143, 521
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 235
NarI GGCGCC 1 cut(s) 201
NdeII GATC 4 cut(s) 37, 135, 168, 219
NlaIII CATG 1 cut(s) 526
NlaIV GGNNCC 2 cut(s) 202, 352
NmuCI GTSAC 3 cut(s) 16, 101, 472
PfeI GAWTC 1 cut(s) 25
Pfl23II CGTACG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 155, 188
PluTI GGCGCC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspLI CGTACG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 202, 352
PspPI GGNCC 1 cut(s) 350
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 2 cut(s) 113, 401
RsaNI GTAC 2 cut(s) 112, 400
RseI CAYNNNNRTG 2 cut(s) 143, 521
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 154, 187
Sau3AI GATC 4 cut(s) 37, 135, 168, 219
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 231
SetI ASST 9 cut(s) 18, 36, 69, 113, 183, 199, 240, 264, 455
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 2 cut(s) 58, 154
SfoI GGCGCC 1 cut(s) 202
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 2 cut(s) 143, 521
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 441
SspDI GGCGCC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 399
TaiI ACGT 2 cut(s) 113, 264
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 3 cut(s) 16, 101, 472
TseI GCWGC 2 cut(s) 153, 186
Tsp45I GTSAC 3 cut(s) 16, 101, 472
TspRI CASTG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.