Rw2G011920

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000455
Physical Location & Seq
Forward (+)
12067908 .. 12069166
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011920.1

Sequence Viewer

Length: 753 bp
ATGCCCGAACCACCACAGTTATTGTGCTCTCGCACCATCACCTCTTTTGTGACTATAATGATTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTACAGGAAGGTCAAGAACGTTCTCTGTAAATTCCCACAAATACGAGACCAGAAGTACGACGAGAAGAACAACCAGGTGATCATCAAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGTCATTAAGTGCATCGAGATCATAGAGCCTCCGCCTCCTCCTCCTCCTCCGCCTCCTCCTCCTCCGCCTCCTCCTCCGCCTCCTCCTCCGCCTCCTCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCGTGCCTTTGCCTTTGCCTTGCCCTTGCCTTGCCGTTGCCGGCCGGGCGTTCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAAAACGTGTTGTTCAGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGGCGTCCTGGCGGTCCCTGCGAAACTGGGTATGGTTACGGAGGGCTTGTCCCTTTCATACAGTATGATGGCCACTATGGAAGGCCGGTGTATGACAGTTACGGCGGTGGGAGGAGCAATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

250

Amino Acids

27.2

Weight (kDa)

7.94

Isoelectric Point (pI)

81.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51090 AT4G16380 AT4G16380 AT4G16380 AT4G16380
fragaria_vesca FvH4_3g00430 FvH4_3g00441 FvH4_3g00443 FvH4_3g00445
malus_domestica MD05G1360500.v1.1 MD08G1234400.v1.1 MD10G1337500.v1.1 MD10G1337700.v1.1 MD10G1337900.v1.1 MD10G1338100.v1.1
prunus_persica Prupe.4G004900_v2.0.a1 Prupe.4G004900_v2.0.a1 Prupe.4G005100_v2.0.a1
pyrus_communis pycom05g32730 pycom10g28690 pycom10g28710 pycom10g28730 pycom10g28760 pycom10g28770
rosa_chinensis RchiOBHm_Chr1g0328811 RchiOBHm_Chr1g0347291 RchiOBHm_Chr1g0347351 RchiOBHm_Chr2g0102091 RchiOBHm_Chr5g0000621
rosa_laevigata RLG00000005325 RLG00000017130 RLG00000028756 RLG00000028757 RLG00000028759 RLG00000028763 RLG00000030882
rosa_multiflora Rmu_co8114210.1_g000001 Rmu_co8238747.1_g000001 Rmu_co8428345.1_g000001 Rmu_sc0000157.1_g000022 Rmu_sc0000157.1_g000026 Rmu_sc0002705.1_g000026 Rmu_sc0002705.1_g000035 Rmu_sc0004156.1_g000004 Rmu_sc0008178.1_g000003 Rmu_sc0012465.1_g000001
rosa_roxburghii Rroxscaffold_1G00075580 Rroxscaffold_2G00140790 Rroxscaffold_3G00273490 Rroxscaffold_4G00307890 Rroxscaffold_4G00307920 Rroxscaffold_4G00307930
rosa_rugosa Rorug01G0186000 Rorug02G0104400.1 Rorug04G0385400 Rorug04G0385400 Rorug05G0290500 Rorug06G0427900
rosa_samantha Rh1AG094800 Rh1AG203100 Rh1AG203500 Rh1AG203900 Rh1BG169300 Rh1BG169500 Rh1CG188400 Rh1CG188800 Rh1CG189000 Rh1DG098100 Rh1DG199800 Rh1DG199900 Rh2AG152900 Rh2BG158600 Rh2BG158800 Rh2CG158000 Rh2DG158500 Rh5AG005200 Rh5BG006800 Rh5CG005600 Rh5DG005500 Rh7AG027500 Rh7BG026700 Rh7CG028600 Rh7DG028200
rosa_wichuraiana Rw1G007400 Rw1G017040 Rw1G017060 Rw1G017080 Rw1G017090 Rw2G011910 Rw2G011920 Rw5G000510 Rw7G002210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 111
AcoI YGGCCR 4 cut(s) 414, 455, 527, 631
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 2 cut(s) 62, 86
AcvI CACGTG 1 cut(s) 540
AcyI GRCGYC 3 cut(s) 237, 493, 565
AfaI GTAC 2 cut(s) 149, 547
AflIII ACRYGT 3 cut(s) 467, 537, 539
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 3 cut(s) 165, 496, 568
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 5 cut(s) 414, 455, 527, 631, 644
ApeKI GCWGC 2 cut(s) 189, 222
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 3 cut(s) 431, 503, 575
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 4 cut(s) 31, 181, 472, 544
AvaII GGWCC 3 cut(s) 431, 503, 575
BalI TGGCCA 1 cut(s) 633
BbrPI CACGTG 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 176, 209
BccI CCATC 3 cut(s) 44, 623, 752
BceAI ACGGC 2 cut(s) 391, 679
BciT130I CCWGG 3 cut(s) 167, 498, 570
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 132
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 2 cut(s) 94, 190
BglI GCCNNNNNGGC 1 cut(s) 418
BisI GCNGC 4 cut(s) 190, 223, 455, 527
BlsI GCNGC 4 cut(s) 191, 224, 456, 528
Bme1390I CCNGG 4 cut(s) 167, 418, 498, 570
Bme18I GGWCC 3 cut(s) 431, 503, 575
BmgT120I GGNCC 3 cut(s) 431, 503, 575
BmiI GGNNCC 3 cut(s) 433, 505, 577
BmrFI CCNGG 4 cut(s) 167, 418, 498, 570
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 418
BsaAI YACGTR 1 cut(s) 540
BsaHI GRCGYC 3 cut(s) 237, 493, 565
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 449, 521
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 594, 624
Bse118I RCCGGY 4 cut(s) 412, 457, 529, 646
Bse1I ACTGG 1 cut(s) 592
BseBI CCWGG 3 cut(s) 167, 498, 570
BseDI CCNNGG 2 cut(s) 449, 521
BseNI ACTGG 1 cut(s) 592
BseX3I CGGCCG 3 cut(s) 414, 455, 527
BseXI GCAGC 2 cut(s) 176, 209
Bsh1285I CGRYCG 3 cut(s) 417, 458, 530
BshFI GGCC 5 cut(s) 416, 457, 529, 633, 646
BsiEI CGRYCG 3 cut(s) 417, 458, 530
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 5 cut(s) 413, 417, 458, 530, 647
BslFI GGGAC 5 cut(s) 224, 417, 489, 561, 596
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 5 cut(s) 224, 417, 489, 561, 596
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 5 cut(s) 416, 457, 529, 633, 646
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 3 cut(s) 171, 204, 255
BspANI GGCC 5 cut(s) 416, 457, 529, 633, 646
BspLI GGNNCC 3 cut(s) 433, 505, 577
BspMAI CTGCAG 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 132
BsrFI RCCGGY 4 cut(s) 412, 457, 529, 646
BsrI ACTGG 1 cut(s) 592
BssAI RCCGGY 4 cut(s) 412, 457, 529, 646
BssECI CCNNGG 2 cut(s) 449, 521
BssMI GATC 3 cut(s) 171, 204, 255
BssNI GRCGYC 3 cut(s) 237, 493, 565
Bst2UI CCWGG 3 cut(s) 167, 498, 570
Bst4CI ACNGT 3 cut(s) 18, 624, 659
BstACI GRCGYC 3 cut(s) 237, 493, 565
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 414, 739
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 3 cut(s) 174, 207, 258
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 171, 204, 255
BstMCI CGRYCG 3 cut(s) 417, 458, 530
BstMWI GCNNNNNNNGC 3 cut(s) 418, 579, 702
BstNI CCWGG 3 cut(s) 167, 498, 570
BstSCI CCNGG 4 cut(s) 165, 416, 496, 568
BstSFI CTRYAG 2 cut(s) 94, 190
BstV1I GCAGC 2 cut(s) 176, 209
BstZI CGGCCG 3 cut(s) 414, 455, 527
BsuRI GGCC 5 cut(s) 416, 457, 529, 633, 646
BtsIMutI CAGTG 2 cut(s) 86, 724
Cac8I GCNNGC 2 cut(s) 414, 739
CfoI GCGC 1 cut(s) 743
Cfr10I RCCGGY 4 cut(s) 412, 457, 529, 646
Cfr13I GGNCC 3 cut(s) 431, 503, 575
CseI GACGC 3 cut(s) 226, 482, 554
CsiI ACCWGGT 1 cut(s) 165
Csp6I GTAC 2 cut(s) 148, 546
CspCI CAANNNNNGTGG 3 cut(s) 38, 214, 249
CviAII CATG 1 cut(s) 748
CviJI RGCY 8 cut(s) 217, 265, 416, 457, 529, 607, 633, 646
CviKI_1 RGCY 8 cut(s) 217, 265, 416, 457, 529, 607, 633, 646
CviQI GTAC 2 cut(s) 148, 546
DpnI GATC 3 cut(s) 173, 206, 257
DpnII GATC 3 cut(s) 171, 204, 255
EaeI YGGCCR 4 cut(s) 414, 455, 527, 631
EagI CGGCCG 3 cut(s) 414, 455, 527
EciI GGCGGA 6 cut(s) 258, 276, 291, 303, 315, 327
EclXI CGGCCG 3 cut(s) 414, 455, 527
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 3 cut(s) 431, 503, 575
Eco52I CGGCCG 3 cut(s) 414, 455, 527
Eco57I CTGAAG 2 cut(s) 62, 86
Eco72I CACGTG 1 cut(s) 540
EcoRII CCWGG 3 cut(s) 165, 496, 568
FaeI CATG 1 cut(s) 751
FaiI YATR 9 cut(s) 56, 220, 260, 594, 620, 627, 639, 654, 749
FaqI GGGAC 5 cut(s) 224, 417, 489, 561, 596
FatI CATG 1 cut(s) 747
FauI CCCGC 1 cut(s) 710
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 190, 223, 455, 527
Fsp4HI GCNGC 4 cut(s) 190, 223, 455, 527
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 742
GluI GCNGC 4 cut(s) 190, 223, 455, 527
HaeIII GGCC 5 cut(s) 416, 457, 529, 633, 646
HapII CCGG 5 cut(s) 413, 417, 458, 530, 647
HgaI GACGC 3 cut(s) 226, 482, 554
HhaI GCGC 1 cut(s) 743
Hin1I GRCGYC 3 cut(s) 237, 493, 565
Hin1II CATG 1 cut(s) 751
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 61
HpaII CCGG 5 cut(s) 413, 417, 458, 530, 647
HphI GGTGA 4 cut(s) 31, 181, 472, 544
Hpy166II GTNNAC 2 cut(s) 73, 535
Hpy188I TCNGA 2 cut(s) 66, 478
Hpy188III TCNNGA 3 cut(s) 106, 197, 253
Hpy8I GTNNAC 2 cut(s) 73, 535
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 6 cut(s) 61, 86, 94, 482, 554, 636
HpyCH4III ACNGT 3 cut(s) 18, 624, 659
HpyCH4IV ACGT 3 cut(s) 111, 467, 539
HpyCH4V TGCA 3 cut(s) 192, 225, 249
HpyF10VI GCNNNNNNNGC 3 cut(s) 418, 579, 702
HpySE526I ACGT 3 cut(s) 111, 467, 539
Hsp92I GRCGYC 3 cut(s) 237, 493, 565
Hsp92II CATG 1 cut(s) 751
HspAI GCGC 1 cut(s) 741
KroI GCCGGC 1 cut(s) 412
KroNI GCCGGC 1 cut(s) 414
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 3 cut(s) 171, 204, 255
LmnI GCTCC 1 cut(s) 675
Lsp1109I GCAGC 2 cut(s) 176, 209
LweI GCATC 1 cut(s) 258
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 1 cut(s) 687
MaeII ACGT 3 cut(s) 111, 467, 539
MaeIII GTNAC 7 cut(s) 49, 482, 554, 596, 659, 689, 697
MalI GATC 3 cut(s) 173, 206, 257
MboI GATC 3 cut(s) 171, 204, 255
MboII GAAGA 2 cut(s) 169, 734
MhlI GDGCHC 1 cut(s) 29
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 633
Mox20I TGGCCA 1 cut(s) 633
MroNI GCCGGC 1 cut(s) 412
MscI TGGCCA 1 cut(s) 633
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 2 cut(s) 179, 373
Msp20I TGGCCA 1 cut(s) 633
MspI CCGG 5 cut(s) 413, 417, 458, 530, 647
MspR9I CCNGG 4 cut(s) 167, 418, 498, 570
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 3 cut(s) 167, 498, 570
MwoI GCNNNNNNNGC 3 cut(s) 418, 579, 702
NaeI GCCGGC 1 cut(s) 414
NciI CCSGG 1 cut(s) 418
NdeII GATC 3 cut(s) 171, 204, 255
NgoMIV GCCGGC 1 cut(s) 412
NlaIII CATG 1 cut(s) 751
NlaIV GGNNCC 3 cut(s) 433, 505, 577
NmeAIII GCCGAG 2 cut(s) 430, 502
NmuCI GTSAC 2 cut(s) 49, 697
OliI CACNNNNGTG 1 cut(s) 373
PctI GAATGC 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 414
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 4 cut(s) 191, 224, 456, 528
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
Ppu21I YACGTR 1 cut(s) 540
Psp1406I AACGTT 1 cut(s) 111
Psp6I CCWGG 3 cut(s) 165, 496, 568
PspCI CACGTG 1 cut(s) 540
PspGI CCWGG 3 cut(s) 165, 496, 568
PspN4I GGNNCC 3 cut(s) 433, 505, 577
PspPI GGNCC 3 cut(s) 431, 503, 575
PstI CTGCAG 1 cut(s) 194
RsaI GTAC 2 cut(s) 149, 547
RsaNI GTAC 2 cut(s) 148, 546
RseI CAYNNNNRTG 2 cut(s) 179, 373
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 4 cut(s) 190, 223, 455, 527
Sau3AI GATC 3 cut(s) 171, 204, 255
Sau96I GGNCC 3 cut(s) 431, 503, 575
ScrFI CCNGG 4 cut(s) 167, 418, 498, 570
SduI GDGCHC 1 cut(s) 29
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 2 cut(s) 94, 190
SinI GGWCC 3 cut(s) 431, 503, 575
SmiMI CAYNNNNRTG 2 cut(s) 179, 373
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 1 cut(s) 122
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 4 cut(s) 165, 416, 496, 568
TaaI ACNGT 3 cut(s) 18, 624, 659
TaiI ACGT 3 cut(s) 114, 470, 542
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 122
TauI GCSGC 2 cut(s) 457, 529
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 86, 724
TseFI GTSAC 2 cut(s) 49, 697
TseI GCWGC 2 cut(s) 189, 222
Tsp45I GTSAC 2 cut(s) 49, 697
TspDTI ATGAA 1 cut(s) 607
TspGWI ACGGA 3 cut(s) 363, 563, 615
TspRI CASTG 2 cut(s) 86, 724
VpaK11BI GGWCC 3 cut(s) 431, 503, 575
XapI RAATTY 1 cut(s) 122
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.